HEADER TOXIN 20-FEB-14 4OV8 TITLE CRYSTAL STRUCTURE OF THE TMH1-LOCK MUTANT OF THE MATURE FORM OF TITLE 2 PLEUROTOLYSIN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLEUROTOLYSIN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TMH1-LOCK, UNP RESIDUES 49-523; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLEUROTUS OSTREATUS; SOURCE 3 ORGANISM_COMMON: OYSTER MUSHROOM; SOURCE 4 ORGANISM_TAXID: 5322; SOURCE 5 GENE: MPLYB, PLYB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS TMH1-LOCK, MACPF DOMAIN, PORE-FORMING PROTEIN, PLEURTOLYSIN A KEYWDS 2 COMPONENT, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR S.C.KONDOS,R.H.P.LAW,J.C.WHISSTOCK,M.A.DUNSTONE REVDAT 2 08-NOV-23 4OV8 1 REMARK SEQADV REVDAT 1 18-FEB-15 4OV8 0 JRNL AUTH N.LUKOYANOVA,S.C.KONDOS,I.FARABELLA,R.H.P.LAW,C.F.REBOUL, JRNL AUTH 2 T.T.CARADOC-DAVIES,B.A.SPICER,O.KLEIFELD,D.A.TRAORE, JRNL AUTH 3 S.M.EKKEL,I.VOSKOBOINIK,J.A.TRAPANI,T.HATFALUDI,K.OLIVER, JRNL AUTH 4 E.M.HOTZE,R.K.TWETEN,J.C.WHISSTOCK,M.TOPF,H.R.SAIBIL, JRNL AUTH 5 M.A.DUNSTONE JRNL TITL CONFORMATIONAL CHANGES DURING PORE FORMATION BY THE JRNL TITL 2 PERFORIN-RELATED PROTEIN PLEUROTOLYSIN JRNL REF PLOS BIOL. V. 13 02049 2015 JRNL REFN ISSN 1544-9173 JRNL PMID 25654333 JRNL DOI 10.1371/JOURNAL.PBIO.1002049 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.6697 - 4.6316 1.00 2947 135 0.2005 0.2057 REMARK 3 2 4.6316 - 3.6763 1.00 2757 165 0.1670 0.1998 REMARK 3 3 3.6763 - 3.2116 1.00 2709 167 0.1881 0.2209 REMARK 3 4 3.2116 - 2.9180 1.00 2746 124 0.2135 0.2973 REMARK 3 5 2.9180 - 2.7089 1.00 2707 147 0.2212 0.2704 REMARK 3 6 2.7089 - 2.5491 1.00 2673 140 0.2374 0.2927 REMARK 3 7 2.5491 - 2.4215 1.00 2679 160 0.2407 0.2978 REMARK 3 8 2.4215 - 2.3161 1.00 2683 143 0.2423 0.2990 REMARK 3 9 2.3161 - 2.2269 1.00 2683 137 0.2814 0.2944 REMARK 3 10 2.2269 - 2.1501 1.00 2689 138 0.2708 0.3378 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3621 REMARK 3 ANGLE : 0.821 4928 REMARK 3 CHIRALITY : 0.052 562 REMARK 3 PLANARITY : 0.004 640 REMARK 3 DIHEDRAL : 12.219 1322 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 63:100) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8250 41.8353 20.0438 REMARK 3 T TENSOR REMARK 3 T11: 0.8358 T22: 0.4020 REMARK 3 T33: 0.6053 T12: -0.2775 REMARK 3 T13: -0.4694 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 1.0864 L22: 3.0610 REMARK 3 L33: 0.8378 L12: 0.6767 REMARK 3 L13: 0.3615 L23: 1.6059 REMARK 3 S TENSOR REMARK 3 S11: -0.6064 S12: -0.0436 S13: 0.2737 REMARK 3 S21: 0.3206 S22: -0.0317 S23: -0.2570 REMARK 3 S31: -1.2154 S32: 0.4918 S33: 0.3610 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 101:181) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6247 30.5680 13.2207 REMARK 3 T TENSOR REMARK 3 T11: 0.3344 T22: 0.2654 REMARK 3 T33: 0.2826 T12: 0.0549 REMARK 3 T13: -0.1326 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 2.4417 L22: 5.5103 REMARK 3 L33: 3.2335 L12: 0.3387 REMARK 3 L13: 0.8120 L23: -0.1537 REMARK 3 S TENSOR REMARK 3 S11: -0.4262 S12: 0.1684 S13: 0.1895 REMARK 3 S21: 0.0207 S22: 0.1354 S23: -0.0495 REMARK 3 S31: -0.6524 S32: -0.2390 S33: 0.2997 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 184:410) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4279 24.4884 14.9739 REMARK 3 T TENSOR REMARK 3 T11: 0.2446 T22: 0.1935 REMARK 3 T33: 0.2455 T12: 0.0159 REMARK 3 T13: -0.0326 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.4877 L22: 3.1404 REMARK 3 L33: 4.1416 L12: -0.1839 REMARK 3 L13: 1.5412 L23: 0.3504 REMARK 3 S TENSOR REMARK 3 S11: -0.2830 S12: -0.1260 S13: 0.2228 REMARK 3 S21: 0.1798 S22: 0.1297 S23: -0.3966 REMARK 3 S31: -0.1968 S32: 0.1709 S33: 0.1302 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 411:487) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2252 2.8467 11.3658 REMARK 3 T TENSOR REMARK 3 T11: 0.6114 T22: 0.2182 REMARK 3 T33: 0.2919 T12: -0.1047 REMARK 3 T13: -0.0501 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 2.6115 L22: 2.0869 REMARK 3 L33: 3.5996 L12: -0.8795 REMARK 3 L13: 0.7825 L23: 1.3687 REMARK 3 S TENSOR REMARK 3 S11: 0.1214 S12: -0.2718 S13: -0.1902 REMARK 3 S21: -0.0600 S22: 0.0590 S23: 0.0683 REMARK 3 S31: 1.3337 S32: -0.3450 S33: -0.1715 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 488:519) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7717 4.3414 8.6634 REMARK 3 T TENSOR REMARK 3 T11: 0.6079 T22: 0.3140 REMARK 3 T33: 0.3026 T12: -0.1147 REMARK 3 T13: 0.0043 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.3545 L22: 2.2415 REMARK 3 L33: 2.9489 L12: -1.6043 REMARK 3 L13: 1.4759 L23: 0.5888 REMARK 3 S TENSOR REMARK 3 S11: 0.2221 S12: -0.4972 S13: -0.1803 REMARK 3 S21: -0.0750 S22: -0.2418 S23: 0.0629 REMARK 3 S31: 1.1485 S32: -0.2788 S33: -0.0348 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000084990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28792 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 174.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4OEJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 8000, 0.1M SODIUM CACODYLATE, REMARK 280 0.2M AMMONIUM SULLFATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.22500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 116.45000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 116.45000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.22500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 48 REMARK 465 SER A 49 REMARK 465 GLN A 50 REMARK 465 ALA A 51 REMARK 465 GLY A 52 REMARK 465 PHE A 182 REMARK 465 ASP A 183 REMARK 465 SER A 520 REMARK 465 GLY A 521 REMARK 465 GLU A 522 REMARK 465 LYS A 523 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 56 CG OD1 ND2 REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 ARG A 65 NE CZ NH1 NH2 REMARK 470 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 103 CG1 CG2 CD1 REMARK 470 LYS A 152 NZ REMARK 470 SER A 180 OG REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 VAL A 185 CG1 CG2 REMARK 470 GLN A 303 CG CD OE1 NE2 REMARK 470 GLN A 335 CG CD OE1 NE2 REMARK 470 ARG A 338 CZ NH1 NH2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 MET A 417 CG SD CE REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 LYS A 497 CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 144 CD REMARK 480 GLN A 252 CD REMARK 480 GLU A 306 CD REMARK 480 ASP A 485 CB REMARK 480 GLU A 486 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 90 O HOH A 848 1.84 REMARK 500 O HOH A 732 O HOH A 782 1.97 REMARK 500 O ILE A 293 O HOH A 803 2.01 REMARK 500 OE1 GLU A 218 O HOH A 839 2.04 REMARK 500 O HOH A 780 O HOH A 804 2.04 REMARK 500 O HOH A 797 O HOH A 816 2.06 REMARK 500 O HOH A 740 O HOH A 790 2.07 REMARK 500 O THR A 300 O HOH A 811 2.10 REMARK 500 NZ LYS A 67 O HOH A 825 2.11 REMARK 500 O ASP A 519 O HOH A 858 2.11 REMARK 500 OH TYR A 161 O HOH A 733 2.13 REMARK 500 OE2 GLU A 120 O HOH A 821 2.17 REMARK 500 O ILE A 468 O HOH A 860 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 771 O HOH A 771 4555 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 154 -168.39 -121.54 REMARK 500 ASP A 179 85.50 -63.54 REMARK 500 GLN A 427 -2.35 69.75 REMARK 500 SER A 501 138.50 -39.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 609 DBREF 4OV8 A 49 523 UNP Q5W9E8 Q5W9E8_PLEOS 49 523 SEQADV 4OV8 MET A 48 UNP Q5W9E8 INITIATING METHIONINE SEQADV 4OV8 CYS A 138 UNP Q5W9E8 PHE 138 ENGINEERED MUTATION SEQADV 4OV8 CYS A 221 UNP Q5W9E8 HIS 221 ENGINEERED MUTATION SEQADV 4OV8 ALA A 487 UNP Q5W9E8 CYS 487 ENGINEERED MUTATION SEQRES 1 A 476 MET SER GLN ALA GLY ASP THR LEU ASN ASP VAL ILE GLN SEQRES 2 A 476 ASP PRO THR ARG ARG ASN LYS LEU ILE ASN ASP ASN ASN SEQRES 3 A 476 LEU LEU LYS GLY ILE ILE MET GLY ARG ASP GLY PRO VAL SEQRES 4 A 476 PRO SER SER ARG GLU LEU ILE VAL ARG PRO ASP THR LEU SEQRES 5 A 476 ARG ALA ILE ILE ASN ASN ARG ALA THR ILE GLU THR THR SEQRES 6 A 476 THR MET GLU ALA GLU PHE THR GLU THR LEU MET GLU SER SEQRES 7 A 476 ASN TYR ASN SER ALA SER VAL LYS VAL SER ALA PRO CYS SEQRES 8 A 476 ILE THR ALA ASN SER GLU TYR SER GLU SER SER SER PHE SEQRES 9 A 476 LYS ASN THR GLU THR GLU LYS SER MET TYR THR SER SER SEQRES 10 A 476 ARG TYR LEU PHE PRO GLN GLY ARG ILE ASP PHE THR THR SEQRES 11 A 476 PRO ASP SER GLY PHE ASP ASP VAL ILE LYS LEU SER PRO SEQRES 12 A 476 GLN PHE THR SER GLY VAL GLN ALA ALA LEU ALA LYS ALA SEQRES 13 A 476 THR GLY THR GLU LYS ARG GLU ALA LEU GLN ASN LEU PHE SEQRES 14 A 476 GLN GLU TYR GLY CYS VAL PHE ARG THR LYS VAL HIS ILE SEQRES 15 A 476 GLY GLY VAL LEU SER ALA HIS THR MET GLU THR PHE SER SEQRES 16 A 476 ARG SER GLU ASN GLU THR GLU VAL LYS GLN ASP VAL LYS SEQRES 17 A 476 ALA GLY LEU GLU GLY ALA VAL LYS GLY TRP GLY GLY GLY SEQRES 18 A 476 ALA THR ALA GLY HIS GLY ASN THR GLN GLY THR ILE THR SEQRES 19 A 476 THR SER GLN ASN ARG LYS LEU ASN VAL LYS TYR ILE VAL SEQRES 20 A 476 ASN GLY GLY ASP TYR THR LYS ILE GLN ASN THR GLU GLU SEQRES 21 A 476 TRP VAL ALA SER THR ASN GLN SER GLU HIS TRP ARG VAL SEQRES 22 A 476 ILE GLU VAL THR GLU VAL THR ALA VAL ALA ASP LEU LEU SEQRES 23 A 476 PRO GLN PRO ILE ARG GLY GLN VAL LYS ASP LEU LEU LYS SEQRES 24 A 476 PRO LEU LEU GLY LYS TRP VAL ASP VAL GLU LYS VAL PRO SEQRES 25 A 476 GLY LEU GLU SER LEU PRO VAL SER VAL TYR ARG PRO LYS SEQRES 26 A 476 GLY ALA ILE PRO ALA GLY TRP PHE TRP LEU GLY ASP THR SEQRES 27 A 476 ALA ASP ALA SER LYS ALA LEU LEU VAL LYS PRO THR LEU SEQRES 28 A 476 PRO ALA ARG SER GLY ARG ASN PRO ALA LEU THR SER LEU SEQRES 29 A 476 HIS GLN GLY SER GLY MET THR GLU GLN PRO PHE VAL ASP SEQRES 30 A 476 LEU PRO GLN TYR GLN TYR LEU SER THR TYR PHE GLY SER SEQRES 31 A 476 PHE ALA HIS ASP THR PRO PRO GLY SER THR LEU ARG GLY SEQRES 32 A 476 LEU ARG PRO ASP HIS VAL LEU PRO GLY ARG TYR GLU MET SEQRES 33 A 476 HIS GLY ASP THR ILE SER THR ALA VAL TYR VAL THR ARG SEQRES 34 A 476 PRO VAL ASP VAL PRO PHE PRO GLU ASP GLU ALA PHE ASP SEQRES 35 A 476 LEU LYS SER LEU VAL ARG VAL LYS LEU PRO GLY SER GLY SEQRES 36 A 476 ASN PRO PRO LYS PRO ARG SER ALA LEU LYS LYS SER MET SEQRES 37 A 476 VAL LEU PHE ASP SER GLY GLU LYS HET SO4 A 601 5 HET SO4 A 602 5 HET CL A 603 1 HET GOL A 604 6 HET CL A 605 1 HET CL A 606 1 HET CL A 607 1 HET CL A 608 1 HET CL A 609 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 CL 6(CL 1-) FORMUL 5 GOL C3 H8 O3 FORMUL 11 HOH *174(H2 O) HELIX 1 1 THR A 54 ASP A 61 1 8 HELIX 2 2 ASP A 61 ASN A 72 1 12 HELIX 3 3 THR A 119 SER A 125 1 7 HELIX 4 4 ASN A 128 ASN A 142 1 15 HELIX 5 5 SER A 189 ALA A 201 1 13 HELIX 6 6 THR A 204 GLY A 220 1 17 HELIX 7 7 ASN A 246 GLY A 267 1 22 HELIX 8 8 ASP A 298 ILE A 302 5 5 HELIX 9 9 ASN A 304 THR A 312 1 9 HELIX 10 10 ASN A 313 TRP A 318 5 6 HELIX 11 11 ALA A 330 LEU A 333 5 4 HELIX 12 12 PRO A 336 LYS A 346 1 11 HELIX 13 13 PRO A 444 LEU A 448 5 5 SHEET 1 A 2 LYS A 76 GLY A 81 0 SHEET 2 A 2 GLY A 84 GLU A 91 -1 O VAL A 86 N ILE A 79 SHEET 1 B 5 ARG A 100 ILE A 103 0 SHEET 2 B 5 GLU A 157 ASP A 174 -1 O ARG A 172 N ILE A 102 SHEET 3 B 5 VAL A 222 SER A 242 -1 O LEU A 233 N TYR A 166 SHEET 4 B 5 LYS A 287 ASN A 295 -1 O ILE A 293 N SER A 234 SHEET 5 B 5 THR A 276 THR A 281 -1 N THR A 276 O TYR A 292 SHEET 1 C 4 THR A 108 MET A 114 0 SHEET 2 C 4 GLU A 157 ASP A 174 -1 O TYR A 161 N MET A 114 SHEET 3 C 4 VAL A 222 SER A 242 -1 O LEU A 233 N TYR A 166 SHEET 4 C 4 ARG A 319 ALA A 328 -1 O ILE A 321 N HIS A 228 SHEET 1 D 4 PHE A 380 TRP A 381 0 SHEET 2 D 4 ALA A 391 PRO A 396 -1 O VAL A 394 N PHE A 380 SHEET 3 D 4 LEU A 348 VAL A 353 -1 N LEU A 349 O LYS A 395 SHEET 4 D 4 VAL A 516 PHE A 518 1 O LEU A 517 N LEU A 348 SHEET 1 E 2 VAL A 355 LYS A 357 0 SHEET 2 E 2 TYR A 369 PRO A 371 -1 O ARG A 370 N GLU A 356 SHEET 1 F 2 LEU A 408 THR A 409 0 SHEET 2 F 2 GLY A 450 LEU A 451 -1 O GLY A 450 N THR A 409 SHEET 1 G 2 LEU A 411 GLN A 413 0 SHEET 2 G 2 PRO A 421 VAL A 423 -1 O PHE A 422 N HIS A 412 SHEET 1 H 4 SER A 492 ARG A 495 0 SHEET 2 H 4 VAL A 472 PRO A 477 -1 N TYR A 473 O VAL A 494 SHEET 3 H 4 VAL A 456 HIS A 464 -1 N HIS A 464 O VAL A 472 SHEET 4 H 4 SER A 509 LEU A 511 -1 O ALA A 510 N LEU A 457 SSBOND 1 CYS A 138 CYS A 221 1555 1555 2.03 CISPEP 1 SER A 180 GLY A 181 0 0.89 CISPEP 2 GLN A 335 PRO A 336 0 -1.42 CISPEP 3 GLY A 373 ALA A 374 0 1.92 CISPEP 4 PRO A 443 PRO A 444 0 -0.70 CISPEP 5 PRO A 499 GLY A 500 0 -8.75 SITE 1 AC1 5 GLU A 124 THR A 237 MET A 238 ASN A 289 SITE 2 AC1 5 HOH A 799 SITE 1 AC2 5 THR A 112 ASN A 128 SER A 129 ARG A 165 SITE 2 AC2 5 HOH A 826 SITE 1 AC3 1 GLU A 124 SITE 1 AC4 4 CYS A 221 ALA A 328 ALA A 330 HOH A 823 SITE 1 AC5 2 GLY A 296 SER A 402 SITE 1 AC6 3 GLY A 414 SER A 415 HOH A 830 SITE 1 AC7 6 GLY A 459 ARG A 460 ARG A 508 HOH A 709 SITE 2 AC7 6 HOH A 840 HOH A 853 SITE 1 AC8 1 PRO A 505 SITE 1 AC9 3 ASP A 174 ASP A 184 HOH A 855 CRYST1 71.181 71.181 174.675 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014049 0.008111 0.000000 0.00000 SCALE2 0.000000 0.016222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005725 0.00000