HEADER RNA BINDING PROTEIN 21-FEB-14 4OVA TITLE STRUCTURE OF THE TWO TANDEM TUDOR DOMAINS AND A NEW IDENTIFIED KH0 TITLE 2 DOMAIN FROM HUMAN FRAGILE X MENTAL RETARDATION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRAGILE X MENTAL RETARDATION PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1-209; COMPND 5 SYNONYM: FMRP, PROTEIN FMR-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FMR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS KH DOMAIN, FRAGILE X MENTAL RETARDATION PROTEIN, FMRP, TANDEM TUDOR KEYWDS 2 DOMAINS, EUKARYOTIC KH DOMAINS, KH0 DOMAIN, RNA BINDING PROTEIN, KEYWDS 3 PROTEIN INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.H.CHEN,Z.Z.CHEN REVDAT 4 20-NOV-24 4OVA 1 REMARK REVDAT 3 08-NOV-23 4OVA 1 REMARK REVDAT 2 21-OCT-15 4OVA 1 JRNL REVDAT 1 25-FEB-15 4OVA 0 JRNL AUTH Y.HU,Z.H.CHEN,Y.FU,Q.HE,L.JIANG,J.ZHENG,Y.GAO,P.MEI, JRNL AUTH 2 Z.Z.CHEN,X.REN JRNL TITL THE AMINO-TERMINAL STRUCTURE OF HUMAN FRAGILE X MENTAL JRNL TITL 2 RETARDATION PROTEIN OBTAINED USING PRECIPITANT-IMMOBILIZED JRNL TITL 3 IMPRINTED POLYMERS JRNL REF NAT COMMUN V. 6 6634 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25799254 JRNL DOI 10.1038/NCOMMS7634 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 36716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1928 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1557 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.4280 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.4640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : 7.98000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -5.76000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.516 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.335 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.295 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.037 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6393 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5871 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8695 ; 1.358 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13472 ; 0.796 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 795 ; 7.100 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 300 ;33.300 ;24.267 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1016 ;20.143 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.961 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 969 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7284 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1475 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3194 ; 6.206 ;10.051 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3192 ; 6.197 ;10.050 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3983 ;10.031 ;15.054 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3984 ;10.030 ;15.054 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3199 ; 6.085 ;10.426 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3199 ; 6.084 ;10.426 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4713 ; 9.966 ;15.428 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7257 ;15.104 ;80.028 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7249 ;15.106 ;80.013 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4OVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38927 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3O8V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 116.32150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.42100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 116.32150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.42100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 201 REMARK 465 ASN A 202 REMARK 465 GLU A 203 REMARK 465 GLU A 204 REMARK 465 ALA A 205 REMARK 465 SER A 206 REMARK 465 LYS A 207 REMARK 465 GLN A 208 REMARK 465 LEU A 209 REMARK 465 ARG B 201 REMARK 465 ASN B 202 REMARK 465 GLU B 203 REMARK 465 GLU B 204 REMARK 465 ALA B 205 REMARK 465 SER B 206 REMARK 465 LYS B 207 REMARK 465 GLN B 208 REMARK 465 LEU B 209 REMARK 465 MET C 200 REMARK 465 ARG C 201 REMARK 465 ASN C 202 REMARK 465 GLU C 203 REMARK 465 GLU C 204 REMARK 465 ALA C 205 REMARK 465 SER C 206 REMARK 465 LYS C 207 REMARK 465 GLN C 208 REMARK 465 LEU C 209 REMARK 465 ARG D 201 REMARK 465 ASN D 202 REMARK 465 GLU D 203 REMARK 465 GLU D 204 REMARK 465 ALA D 205 REMARK 465 SER D 206 REMARK 465 LYS D 207 REMARK 465 GLN D 208 REMARK 465 LEU D 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 TYR A 16 OH REMARK 470 ARG A 40 CZ NH1 NH2 REMARK 470 VAL A 53 CG1 CG2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 TYR A 103 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 TYR A 166 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 187 CE REMARK 470 MET B 1 CG SD CE REMARK 470 ARG B 40 CZ NH1 NH2 REMARK 470 VAL B 53 CG1 CG2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 LYS B 88 CE NZ REMARK 470 ILE B 106 CG1 CG2 CD1 REMARK 470 TYR B 166 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET B 200 CG SD CE REMARK 470 MET C 1 CG SD CE REMARK 470 GLU C 3 CG CD OE1 OE2 REMARK 470 GLU C 33 CG CD OE1 OE2 REMARK 470 ASP C 58 CG OD1 OD2 REMARK 470 ARG C 70 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 74 CG CD CE NZ REMARK 470 ARG C 85 CG CD NE CZ NH1 NH2 REMARK 470 MET C 86 CE REMARK 470 ILE C 87 CD1 REMARK 470 TYR C 103 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 123 CG CD CE NZ REMARK 470 LYS C 128 CG CD CE NZ REMARK 470 LYS C 130 CG CD CE NZ REMARK 470 GLU C 135 CG CD OE1 OE2 REMARK 470 ASP C 136 CG OD1 OD2 REMARK 470 LEU C 137 CG CD1 CD2 REMARK 470 ARG C 138 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 139 CG CD OE1 NE2 REMARK 470 MET C 140 CG SD CE REMARK 470 CYS C 141 SG REMARK 470 LYS C 143 CG CD CE NZ REMARK 470 GLU C 144 CG CD OE1 OE2 REMARK 470 LYS C 148 CG CD CE NZ REMARK 470 TYR C 166 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 175 CG CD OE1 OE2 REMARK 470 ILE C 185 CD1 REMARK 470 LEU C 192 CG CD1 CD2 REMARK 470 ARG C 193 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 195 CG CD CE NZ REMARK 470 LEU C 196 CG CD1 CD2 REMARK 470 LEU C 198 CG CD1 CD2 REMARK 470 MET D 1 CG SD CE REMARK 470 LYS D 17 CG CD CE NZ REMARK 470 GLU D 33 OE1 REMARK 470 ASN D 34 OD1 ND2 REMARK 470 ASN D 35 OD1 ND2 REMARK 470 ARG D 40 CZ NH1 NH2 REMARK 470 TYR D 55 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 57 CG CD CE NZ REMARK 470 ILE D 59 CG1 CG2 CD1 REMARK 470 VAL D 65 CG1 CG2 REMARK 470 LYS D 88 CG CD CE NZ REMARK 470 ASP D 100 CG OD1 OD2 REMARK 470 THR D 102 OG1 CG2 REMARK 470 TYR D 103 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU D 112 CD1 CD2 REMARK 470 SER D 114 OG REMARK 470 GLU D 135 CG CD OE1 OE2 REMARK 470 ASP D 136 CG OD1 OD2 REMARK 470 TYR D 166 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 179 CD CE NZ REMARK 470 MET D 183 CE REMARK 470 LEU D 184 CD1 CD2 REMARK 470 ASP D 186 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN C 116 O HOH C 418 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 180 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 24.44 41.52 REMARK 500 ALA A 71 -63.07 -109.05 REMARK 500 LYS A 88 114.96 -168.99 REMARK 500 ALA A 98 -73.78 -68.04 REMARK 500 ASP A 100 -145.34 60.99 REMARK 500 TYR A 103 73.10 -151.21 REMARK 500 ARG A 113 145.97 -174.42 REMARK 500 ARG A 138 -37.85 -32.72 REMARK 500 HIS A 147 -3.72 -140.13 REMARK 500 GLU B 2 114.94 -33.70 REMARK 500 LYS B 21 -31.14 -134.08 REMARK 500 TYR B 55 -55.30 -144.85 REMARK 500 ASN B 56 63.26 31.49 REMARK 500 SER B 62 -19.71 94.01 REMARK 500 CYS B 99 -103.12 57.59 REMARK 500 THR B 102 10.62 -151.18 REMARK 500 ASN B 116 121.21 -32.04 REMARK 500 ASP B 136 -35.85 -39.37 REMARK 500 ALA B 142 -70.73 -94.63 REMARK 500 ILE B 199 53.82 -115.19 REMARK 500 ASN C 35 32.95 32.18 REMARK 500 SER C 62 -3.36 63.87 REMARK 500 LYS C 74 -7.19 89.74 REMARK 500 ALA C 97 58.12 -97.51 REMARK 500 CYS C 99 93.62 -55.85 REMARK 500 THR C 102 63.86 -101.44 REMARK 500 ALA C 142 -71.47 -71.74 REMARK 500 LYS C 179 -70.80 -57.81 REMARK 500 LEU C 198 36.85 -76.18 REMARK 500 ASN D 34 -123.23 61.56 REMARK 500 ASN D 35 52.45 -141.19 REMARK 500 LYS D 74 10.88 58.86 REMARK 500 CYS D 99 -139.43 53.39 REMARK 500 GLN D 139 -67.66 -28.58 REMARK 500 GLU D 144 -39.32 -34.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN D 34 ASN D 35 148.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QND RELATED DB: PDB DBREF 4OVA A 1 209 UNP Q06787 FMR1_HUMAN 1 209 DBREF 4OVA B 1 209 UNP Q06787 FMR1_HUMAN 1 209 DBREF 4OVA C 1 209 UNP Q06787 FMR1_HUMAN 1 209 DBREF 4OVA D 1 209 UNP Q06787 FMR1_HUMAN 1 209 SEQRES 1 A 209 MET GLU GLU LEU VAL VAL GLU VAL ARG GLY SER ASN GLY SEQRES 2 A 209 ALA PHE TYR LYS ALA PHE VAL LYS ASP VAL HIS GLU ASP SEQRES 3 A 209 SER ILE THR VAL ALA PHE GLU ASN ASN TRP GLN PRO ASP SEQRES 4 A 209 ARG GLN ILE PRO PHE HIS ASP VAL ARG PHE PRO PRO PRO SEQRES 5 A 209 VAL GLY TYR ASN LYS ASP ILE ASN GLU SER ASP GLU VAL SEQRES 6 A 209 GLU VAL TYR SER ARG ALA ASN GLU LYS GLU PRO CYS CYS SEQRES 7 A 209 TRP TRP LEU ALA LYS VAL ARG MET ILE LYS GLY GLU PHE SEQRES 8 A 209 TYR VAL ILE GLU TYR ALA ALA CYS ASP ALA THR TYR ASN SEQRES 9 A 209 GLU ILE VAL THR ILE GLU ARG LEU ARG SER VAL ASN PRO SEQRES 10 A 209 ASN LYS PRO ALA THR LYS ASP THR PHE HIS LYS ILE LYS SEQRES 11 A 209 LEU ASP VAL PRO GLU ASP LEU ARG GLN MET CYS ALA LYS SEQRES 12 A 209 GLU ALA ALA HIS LYS ASP PHE LYS LYS ALA VAL GLY ALA SEQRES 13 A 209 PHE SER VAL THR TYR ASP PRO GLU ASN TYR GLN LEU VAL SEQRES 14 A 209 ILE LEU SER ILE ASN GLU VAL THR SER LYS ARG ALA HIS SEQRES 15 A 209 MET LEU ILE ASP MET HIS PHE ARG SER LEU ARG THR LYS SEQRES 16 A 209 LEU SER LEU ILE MET ARG ASN GLU GLU ALA SER LYS GLN SEQRES 17 A 209 LEU SEQRES 1 B 209 MET GLU GLU LEU VAL VAL GLU VAL ARG GLY SER ASN GLY SEQRES 2 B 209 ALA PHE TYR LYS ALA PHE VAL LYS ASP VAL HIS GLU ASP SEQRES 3 B 209 SER ILE THR VAL ALA PHE GLU ASN ASN TRP GLN PRO ASP SEQRES 4 B 209 ARG GLN ILE PRO PHE HIS ASP VAL ARG PHE PRO PRO PRO SEQRES 5 B 209 VAL GLY TYR ASN LYS ASP ILE ASN GLU SER ASP GLU VAL SEQRES 6 B 209 GLU VAL TYR SER ARG ALA ASN GLU LYS GLU PRO CYS CYS SEQRES 7 B 209 TRP TRP LEU ALA LYS VAL ARG MET ILE LYS GLY GLU PHE SEQRES 8 B 209 TYR VAL ILE GLU TYR ALA ALA CYS ASP ALA THR TYR ASN SEQRES 9 B 209 GLU ILE VAL THR ILE GLU ARG LEU ARG SER VAL ASN PRO SEQRES 10 B 209 ASN LYS PRO ALA THR LYS ASP THR PHE HIS LYS ILE LYS SEQRES 11 B 209 LEU ASP VAL PRO GLU ASP LEU ARG GLN MET CYS ALA LYS SEQRES 12 B 209 GLU ALA ALA HIS LYS ASP PHE LYS LYS ALA VAL GLY ALA SEQRES 13 B 209 PHE SER VAL THR TYR ASP PRO GLU ASN TYR GLN LEU VAL SEQRES 14 B 209 ILE LEU SER ILE ASN GLU VAL THR SER LYS ARG ALA HIS SEQRES 15 B 209 MET LEU ILE ASP MET HIS PHE ARG SER LEU ARG THR LYS SEQRES 16 B 209 LEU SER LEU ILE MET ARG ASN GLU GLU ALA SER LYS GLN SEQRES 17 B 209 LEU SEQRES 1 C 209 MET GLU GLU LEU VAL VAL GLU VAL ARG GLY SER ASN GLY SEQRES 2 C 209 ALA PHE TYR LYS ALA PHE VAL LYS ASP VAL HIS GLU ASP SEQRES 3 C 209 SER ILE THR VAL ALA PHE GLU ASN ASN TRP GLN PRO ASP SEQRES 4 C 209 ARG GLN ILE PRO PHE HIS ASP VAL ARG PHE PRO PRO PRO SEQRES 5 C 209 VAL GLY TYR ASN LYS ASP ILE ASN GLU SER ASP GLU VAL SEQRES 6 C 209 GLU VAL TYR SER ARG ALA ASN GLU LYS GLU PRO CYS CYS SEQRES 7 C 209 TRP TRP LEU ALA LYS VAL ARG MET ILE LYS GLY GLU PHE SEQRES 8 C 209 TYR VAL ILE GLU TYR ALA ALA CYS ASP ALA THR TYR ASN SEQRES 9 C 209 GLU ILE VAL THR ILE GLU ARG LEU ARG SER VAL ASN PRO SEQRES 10 C 209 ASN LYS PRO ALA THR LYS ASP THR PHE HIS LYS ILE LYS SEQRES 11 C 209 LEU ASP VAL PRO GLU ASP LEU ARG GLN MET CYS ALA LYS SEQRES 12 C 209 GLU ALA ALA HIS LYS ASP PHE LYS LYS ALA VAL GLY ALA SEQRES 13 C 209 PHE SER VAL THR TYR ASP PRO GLU ASN TYR GLN LEU VAL SEQRES 14 C 209 ILE LEU SER ILE ASN GLU VAL THR SER LYS ARG ALA HIS SEQRES 15 C 209 MET LEU ILE ASP MET HIS PHE ARG SER LEU ARG THR LYS SEQRES 16 C 209 LEU SER LEU ILE MET ARG ASN GLU GLU ALA SER LYS GLN SEQRES 17 C 209 LEU SEQRES 1 D 209 MET GLU GLU LEU VAL VAL GLU VAL ARG GLY SER ASN GLY SEQRES 2 D 209 ALA PHE TYR LYS ALA PHE VAL LYS ASP VAL HIS GLU ASP SEQRES 3 D 209 SER ILE THR VAL ALA PHE GLU ASN ASN TRP GLN PRO ASP SEQRES 4 D 209 ARG GLN ILE PRO PHE HIS ASP VAL ARG PHE PRO PRO PRO SEQRES 5 D 209 VAL GLY TYR ASN LYS ASP ILE ASN GLU SER ASP GLU VAL SEQRES 6 D 209 GLU VAL TYR SER ARG ALA ASN GLU LYS GLU PRO CYS CYS SEQRES 7 D 209 TRP TRP LEU ALA LYS VAL ARG MET ILE LYS GLY GLU PHE SEQRES 8 D 209 TYR VAL ILE GLU TYR ALA ALA CYS ASP ALA THR TYR ASN SEQRES 9 D 209 GLU ILE VAL THR ILE GLU ARG LEU ARG SER VAL ASN PRO SEQRES 10 D 209 ASN LYS PRO ALA THR LYS ASP THR PHE HIS LYS ILE LYS SEQRES 11 D 209 LEU ASP VAL PRO GLU ASP LEU ARG GLN MET CYS ALA LYS SEQRES 12 D 209 GLU ALA ALA HIS LYS ASP PHE LYS LYS ALA VAL GLY ALA SEQRES 13 D 209 PHE SER VAL THR TYR ASP PRO GLU ASN TYR GLN LEU VAL SEQRES 14 D 209 ILE LEU SER ILE ASN GLU VAL THR SER LYS ARG ALA HIS SEQRES 15 D 209 MET LEU ILE ASP MET HIS PHE ARG SER LEU ARG THR LYS SEQRES 16 D 209 LEU SER LEU ILE MET ARG ASN GLU GLU ALA SER LYS GLN SEQRES 17 D 209 LEU HET TRS C 301 8 HET TRS D 301 8 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 5 TRS 2(C4 H12 N O3 1+) FORMUL 7 HOH *171(H2 O) HELIX 1 1 PHE A 32 TRP A 36 5 5 HELIX 2 2 CYS A 99 ASN A 104 5 6 HELIX 3 3 PRO A 134 GLN A 139 1 6 HELIX 4 4 MET A 140 ALA A 146 5 7 HELIX 5 5 HIS A 147 GLY A 155 1 9 HELIX 6 6 VAL A 176 MET A 200 1 25 HELIX 7 7 PHE B 32 TRP B 36 5 5 HELIX 8 8 GLU B 110 LEU B 112 5 3 HELIX 9 9 THR B 122 PHE B 126 5 5 HELIX 10 10 PRO B 134 GLN B 139 1 6 HELIX 11 11 LYS B 143 ALA B 146 5 4 HELIX 12 12 HIS B 147 VAL B 154 1 8 HELIX 13 13 VAL B 176 LEU B 198 1 23 HELIX 14 14 PHE C 32 TRP C 36 5 5 HELIX 15 15 GLU C 110 LEU C 112 5 3 HELIX 16 16 THR C 122 PHE C 126 5 5 HELIX 17 17 PRO C 134 GLN C 139 1 6 HELIX 18 18 LYS C 143 ALA C 146 5 4 HELIX 19 19 HIS C 147 GLY C 155 1 9 HELIX 20 20 VAL C 176 LEU C 198 1 23 HELIX 21 21 LEU D 137 ALA D 142 1 6 HELIX 22 22 LYS D 143 ALA D 146 5 4 HELIX 23 23 HIS D 147 VAL D 154 1 8 HELIX 24 24 VAL D 176 MET D 200 1 25 SHEET 1 A 5 ARG A 40 PRO A 43 0 SHEET 2 A 5 SER A 27 ALA A 31 -1 N ILE A 28 O ILE A 42 SHEET 3 A 5 PHE A 15 VAL A 23 -1 N ASP A 22 O THR A 29 SHEET 4 A 5 VAL A 5 ARG A 9 -1 N VAL A 6 O ALA A 18 SHEET 5 A 5 VAL A 47 ARG A 48 -1 O ARG A 48 N GLU A 7 SHEET 1 B 5 GLU A 105 THR A 108 0 SHEET 2 B 5 PHE A 91 TYR A 96 -1 N TYR A 92 O VAL A 107 SHEET 3 B 5 CYS A 78 LYS A 88 -1 N MET A 86 O VAL A 93 SHEET 4 B 5 GLU A 64 SER A 69 -1 N VAL A 65 O ALA A 82 SHEET 5 B 5 LEU A 112 SER A 114 -1 O ARG A 113 N GLU A 66 SHEET 1 C 3 HIS A 127 ASP A 132 0 SHEET 2 C 3 GLN A 167 SER A 172 -1 O SER A 172 N HIS A 127 SHEET 3 C 3 SER A 158 ASP A 162 -1 N ASP A 162 O GLN A 167 SHEET 1 D 5 ARG B 40 PRO B 43 0 SHEET 2 D 5 SER B 27 ALA B 31 -1 N VAL B 30 O ARG B 40 SHEET 3 D 5 PHE B 15 VAL B 23 -1 N PHE B 19 O ALA B 31 SHEET 4 D 5 LEU B 4 ARG B 9 -1 N VAL B 8 O TYR B 16 SHEET 5 D 5 VAL B 47 ARG B 48 -1 O ARG B 48 N GLU B 7 SHEET 1 E 4 GLU B 64 SER B 69 0 SHEET 2 E 4 CYS B 78 LYS B 88 -1 O TRP B 80 N VAL B 67 SHEET 3 E 4 PHE B 91 TYR B 96 -1 O VAL B 93 N MET B 86 SHEET 4 E 4 ASN B 104 THR B 108 -1 O VAL B 107 N TYR B 92 SHEET 1 F 3 HIS B 127 ASP B 132 0 SHEET 2 F 3 GLN B 167 SER B 172 -1 O LEU B 168 N LEU B 131 SHEET 3 F 3 SER B 158 ASP B 162 -1 N THR B 160 O VAL B 169 SHEET 1 G 5 ARG C 40 PRO C 43 0 SHEET 2 G 5 SER C 27 ALA C 31 -1 N ILE C 28 O ILE C 42 SHEET 3 G 5 PHE C 15 VAL C 23 -1 N PHE C 19 O ALA C 31 SHEET 4 G 5 VAL C 5 ARG C 9 -1 N VAL C 6 O ALA C 18 SHEET 5 G 5 VAL C 47 ARG C 48 -1 O ARG C 48 N GLU C 7 SHEET 1 H 4 GLU C 64 ARG C 70 0 SHEET 2 H 4 CYS C 77 MET C 86 -1 O ALA C 82 N VAL C 65 SHEET 3 H 4 PHE C 91 TYR C 96 -1 O VAL C 93 N ARG C 85 SHEET 4 H 4 TYR C 103 THR C 108 -1 O VAL C 107 N TYR C 92 SHEET 1 I 3 HIS C 127 ASP C 132 0 SHEET 2 I 3 GLN C 167 SER C 172 -1 O LEU C 168 N LEU C 131 SHEET 3 I 3 SER C 158 ASP C 162 -1 N THR C 160 O VAL C 169 SHEET 1 J 5 GLN D 41 PRO D 43 0 SHEET 2 J 5 SER D 27 ALA D 31 -1 N ILE D 28 O ILE D 42 SHEET 3 J 5 PHE D 15 VAL D 23 -1 N ASP D 22 O THR D 29 SHEET 4 J 5 VAL D 5 ARG D 9 -1 N VAL D 8 O TYR D 16 SHEET 5 J 5 VAL D 47 ARG D 48 -1 O ARG D 48 N GLU D 7 SHEET 1 K 5 ASN D 104 THR D 108 0 SHEET 2 K 5 PHE D 91 TYR D 96 -1 N TYR D 92 O VAL D 107 SHEET 3 K 5 CYS D 77 LYS D 88 -1 N ARG D 85 O VAL D 93 SHEET 4 K 5 VAL D 65 ARG D 70 -1 N VAL D 67 O TRP D 80 SHEET 5 K 5 LEU D 112 SER D 114 -1 O ARG D 113 N GLU D 66 SHEET 1 L 3 HIS D 127 ASP D 132 0 SHEET 2 L 3 GLN D 167 SER D 172 -1 O ILE D 170 N ILE D 129 SHEET 3 L 3 SER D 158 ASP D 162 -1 N SER D 158 O LEU D 171 SSBOND 1 CYS A 99 CYS B 99 1555 1555 2.04 SSBOND 2 CYS C 99 CYS D 99 1555 1555 2.04 SITE 1 AC1 3 ARG C 70 ALA C 71 TYR C 96 SITE 1 AC2 3 ARG D 70 ALA D 71 HOH D 444 CRYST1 232.643 60.842 168.856 90.00 122.99 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004298 0.000000 0.002790 0.00000 SCALE2 0.000000 0.016436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007061 0.00000