data_4OVE # _entry.id 4OVE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4OVE RCSB RCSB084996 WWPDB D_1000084996 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4OVE _pdbx_database_status.recvd_initial_deposition_date 2014-02-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Meier, M.' 1 'Nikodemus, D.' 2 'Reuten, R.' 3 'Patel, T.R.' 4 'Orriss, G.' 5 'Okun, N.' 6 'Koch, M.' 7 'Stetefeld, J.' 8 # _citation.id primary _citation.title 'Structural Decoding of the Netrin-1/UNC5 Interaction and its Therapeutical Implications in Cancers.' _citation.journal_abbrev 'Cancer Cell' _citation.journal_volume 29 _citation.page_first 173 _citation.page_last 185 _citation.year 2016 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1535-6108 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26859457 _citation.pdbx_database_id_DOI 10.1016/j.ccell.2016.01.001 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Grandin, M.' 1 ? primary 'Meier, M.' 2 ? primary 'Delcros, J.G.' 3 ? primary 'Nikodemus, D.' 4 ? primary 'Reuten, R.' 5 ? primary 'Patel, T.R.' 6 ? primary 'Goldschneider, D.' 7 ? primary 'Orriss, G.' 8 ? primary 'Krahn, N.' 9 ? primary 'Boussouar, A.' 10 ? primary 'Abes, R.' 11 ? primary 'Dean, Y.' 12 ? primary 'Neves, D.' 13 ? primary 'Bernet, A.' 14 ? primary 'Depil, S.' 15 ? primary 'Schneiders, F.' 16 ? primary 'Poole, K.' 17 ? primary 'Dante, R.' 18 ? primary 'Koch, M.' 19 ? primary 'Mehlen, P.' 20 ? primary 'Stetefeld, J.' 21 ? # _cell.entry_id 4OVE _cell.length_a 69.754 _cell.length_b 69.754 _cell.length_c 334.802 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4OVE _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Netrin-1 48994.285 1 ? ? ? ? 2 branched man ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 910.823 1 ? ? ? ? 3 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 6 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 7 water nat water 18.015 97 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RGGPGLSMFAGQAAQPDPCSDENGHPRRCIPDFVNAAFGKDVRVSSTCGRPPARYCVVSERGEERLRSCHLCNSSDPKKA HPPAFLTDLNNPHNLTCWQSENYLQFPHNVTLTLSLGKKFEVTYVSLQFCSPRPESMAIYKSMDYGRTWVPFQFYSTQCR KMYNRPHRAPITKQNEQEAVCTDSHTDMRPLSGGLIAFSTLDGRPSAHDFDNSPVLQDWVTATDIRVAFSRLHTFGDENE DDSELARDSYYYAVSDLQVGGRCKCNGHAARCVRDRDDSLVCDCRHNTAGPECDRCKPFHYDRPWQRATAREANECVACN CNLHARRCRFNMELYKLSGRKSGGVCLNCRHNTAGRHCHYCKEGFYRDMGKPITHRKACKACDCHPVGAAGKTCNQTTGQ CPCKDGVTGITCNRCAKGYQQSRSPIAPCIKIPVALE ; _entity_poly.pdbx_seq_one_letter_code_can ;RGGPGLSMFAGQAAQPDPCSDENGHPRRCIPDFVNAAFGKDVRVSSTCGRPPARYCVVSERGEERLRSCHLCNSSDPKKA HPPAFLTDLNNPHNLTCWQSENYLQFPHNVTLTLSLGKKFEVTYVSLQFCSPRPESMAIYKSMDYGRTWVPFQFYSTQCR KMYNRPHRAPITKQNEQEAVCTDSHTDMRPLSGGLIAFSTLDGRPSAHDFDNSPVLQDWVTATDIRVAFSRLHTFGDENE DDSELARDSYYYAVSDLQVGGRCKCNGHAARCVRDRDDSLVCDCRHNTAGPECDRCKPFHYDRPWQRATAREANECVACN CNLHARRCRFNMELYKLSGRKSGGVCLNCRHNTAGRHCHYCKEGFYRDMGKPITHRKACKACDCHPVGAAGKTCNQTTGQ CPCKDGVTGITCNRCAKGYQQSRSPIAPCIKIPVALE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 GLY n 1 3 GLY n 1 4 PRO n 1 5 GLY n 1 6 LEU n 1 7 SER n 1 8 MET n 1 9 PHE n 1 10 ALA n 1 11 GLY n 1 12 GLN n 1 13 ALA n 1 14 ALA n 1 15 GLN n 1 16 PRO n 1 17 ASP n 1 18 PRO n 1 19 CYS n 1 20 SER n 1 21 ASP n 1 22 GLU n 1 23 ASN n 1 24 GLY n 1 25 HIS n 1 26 PRO n 1 27 ARG n 1 28 ARG n 1 29 CYS n 1 30 ILE n 1 31 PRO n 1 32 ASP n 1 33 PHE n 1 34 VAL n 1 35 ASN n 1 36 ALA n 1 37 ALA n 1 38 PHE n 1 39 GLY n 1 40 LYS n 1 41 ASP n 1 42 VAL n 1 43 ARG n 1 44 VAL n 1 45 SER n 1 46 SER n 1 47 THR n 1 48 CYS n 1 49 GLY n 1 50 ARG n 1 51 PRO n 1 52 PRO n 1 53 ALA n 1 54 ARG n 1 55 TYR n 1 56 CYS n 1 57 VAL n 1 58 VAL n 1 59 SER n 1 60 GLU n 1 61 ARG n 1 62 GLY n 1 63 GLU n 1 64 GLU n 1 65 ARG n 1 66 LEU n 1 67 ARG n 1 68 SER n 1 69 CYS n 1 70 HIS n 1 71 LEU n 1 72 CYS n 1 73 ASN n 1 74 SER n 1 75 SER n 1 76 ASP n 1 77 PRO n 1 78 LYS n 1 79 LYS n 1 80 ALA n 1 81 HIS n 1 82 PRO n 1 83 PRO n 1 84 ALA n 1 85 PHE n 1 86 LEU n 1 87 THR n 1 88 ASP n 1 89 LEU n 1 90 ASN n 1 91 ASN n 1 92 PRO n 1 93 HIS n 1 94 ASN n 1 95 LEU n 1 96 THR n 1 97 CYS n 1 98 TRP n 1 99 GLN n 1 100 SER n 1 101 GLU n 1 102 ASN n 1 103 TYR n 1 104 LEU n 1 105 GLN n 1 106 PHE n 1 107 PRO n 1 108 HIS n 1 109 ASN n 1 110 VAL n 1 111 THR n 1 112 LEU n 1 113 THR n 1 114 LEU n 1 115 SER n 1 116 LEU n 1 117 GLY n 1 118 LYS n 1 119 LYS n 1 120 PHE n 1 121 GLU n 1 122 VAL n 1 123 THR n 1 124 TYR n 1 125 VAL n 1 126 SER n 1 127 LEU n 1 128 GLN n 1 129 PHE n 1 130 CYS n 1 131 SER n 1 132 PRO n 1 133 ARG n 1 134 PRO n 1 135 GLU n 1 136 SER n 1 137 MET n 1 138 ALA n 1 139 ILE n 1 140 TYR n 1 141 LYS n 1 142 SER n 1 143 MET n 1 144 ASP n 1 145 TYR n 1 146 GLY n 1 147 ARG n 1 148 THR n 1 149 TRP n 1 150 VAL n 1 151 PRO n 1 152 PHE n 1 153 GLN n 1 154 PHE n 1 155 TYR n 1 156 SER n 1 157 THR n 1 158 GLN n 1 159 CYS n 1 160 ARG n 1 161 LYS n 1 162 MET n 1 163 TYR n 1 164 ASN n 1 165 ARG n 1 166 PRO n 1 167 HIS n 1 168 ARG n 1 169 ALA n 1 170 PRO n 1 171 ILE n 1 172 THR n 1 173 LYS n 1 174 GLN n 1 175 ASN n 1 176 GLU n 1 177 GLN n 1 178 GLU n 1 179 ALA n 1 180 VAL n 1 181 CYS n 1 182 THR n 1 183 ASP n 1 184 SER n 1 185 HIS n 1 186 THR n 1 187 ASP n 1 188 MET n 1 189 ARG n 1 190 PRO n 1 191 LEU n 1 192 SER n 1 193 GLY n 1 194 GLY n 1 195 LEU n 1 196 ILE n 1 197 ALA n 1 198 PHE n 1 199 SER n 1 200 THR n 1 201 LEU n 1 202 ASP n 1 203 GLY n 1 204 ARG n 1 205 PRO n 1 206 SER n 1 207 ALA n 1 208 HIS n 1 209 ASP n 1 210 PHE n 1 211 ASP n 1 212 ASN n 1 213 SER n 1 214 PRO n 1 215 VAL n 1 216 LEU n 1 217 GLN n 1 218 ASP n 1 219 TRP n 1 220 VAL n 1 221 THR n 1 222 ALA n 1 223 THR n 1 224 ASP n 1 225 ILE n 1 226 ARG n 1 227 VAL n 1 228 ALA n 1 229 PHE n 1 230 SER n 1 231 ARG n 1 232 LEU n 1 233 HIS n 1 234 THR n 1 235 PHE n 1 236 GLY n 1 237 ASP n 1 238 GLU n 1 239 ASN n 1 240 GLU n 1 241 ASP n 1 242 ASP n 1 243 SER n 1 244 GLU n 1 245 LEU n 1 246 ALA n 1 247 ARG n 1 248 ASP n 1 249 SER n 1 250 TYR n 1 251 TYR n 1 252 TYR n 1 253 ALA n 1 254 VAL n 1 255 SER n 1 256 ASP n 1 257 LEU n 1 258 GLN n 1 259 VAL n 1 260 GLY n 1 261 GLY n 1 262 ARG n 1 263 CYS n 1 264 LYS n 1 265 CYS n 1 266 ASN n 1 267 GLY n 1 268 HIS n 1 269 ALA n 1 270 ALA n 1 271 ARG n 1 272 CYS n 1 273 VAL n 1 274 ARG n 1 275 ASP n 1 276 ARG n 1 277 ASP n 1 278 ASP n 1 279 SER n 1 280 LEU n 1 281 VAL n 1 282 CYS n 1 283 ASP n 1 284 CYS n 1 285 ARG n 1 286 HIS n 1 287 ASN n 1 288 THR n 1 289 ALA n 1 290 GLY n 1 291 PRO n 1 292 GLU n 1 293 CYS n 1 294 ASP n 1 295 ARG n 1 296 CYS n 1 297 LYS n 1 298 PRO n 1 299 PHE n 1 300 HIS n 1 301 TYR n 1 302 ASP n 1 303 ARG n 1 304 PRO n 1 305 TRP n 1 306 GLN n 1 307 ARG n 1 308 ALA n 1 309 THR n 1 310 ALA n 1 311 ARG n 1 312 GLU n 1 313 ALA n 1 314 ASN n 1 315 GLU n 1 316 CYS n 1 317 VAL n 1 318 ALA n 1 319 CYS n 1 320 ASN n 1 321 CYS n 1 322 ASN n 1 323 LEU n 1 324 HIS n 1 325 ALA n 1 326 ARG n 1 327 ARG n 1 328 CYS n 1 329 ARG n 1 330 PHE n 1 331 ASN n 1 332 MET n 1 333 GLU n 1 334 LEU n 1 335 TYR n 1 336 LYS n 1 337 LEU n 1 338 SER n 1 339 GLY n 1 340 ARG n 1 341 LYS n 1 342 SER n 1 343 GLY n 1 344 GLY n 1 345 VAL n 1 346 CYS n 1 347 LEU n 1 348 ASN n 1 349 CYS n 1 350 ARG n 1 351 HIS n 1 352 ASN n 1 353 THR n 1 354 ALA n 1 355 GLY n 1 356 ARG n 1 357 HIS n 1 358 CYS n 1 359 HIS n 1 360 TYR n 1 361 CYS n 1 362 LYS n 1 363 GLU n 1 364 GLY n 1 365 PHE n 1 366 TYR n 1 367 ARG n 1 368 ASP n 1 369 MET n 1 370 GLY n 1 371 LYS n 1 372 PRO n 1 373 ILE n 1 374 THR n 1 375 HIS n 1 376 ARG n 1 377 LYS n 1 378 ALA n 1 379 CYS n 1 380 LYS n 1 381 ALA n 1 382 CYS n 1 383 ASP n 1 384 CYS n 1 385 HIS n 1 386 PRO n 1 387 VAL n 1 388 GLY n 1 389 ALA n 1 390 ALA n 1 391 GLY n 1 392 LYS n 1 393 THR n 1 394 CYS n 1 395 ASN n 1 396 GLN n 1 397 THR n 1 398 THR n 1 399 GLY n 1 400 GLN n 1 401 CYS n 1 402 PRO n 1 403 CYS n 1 404 LYS n 1 405 ASP n 1 406 GLY n 1 407 VAL n 1 408 THR n 1 409 GLY n 1 410 ILE n 1 411 THR n 1 412 CYS n 1 413 ASN n 1 414 ARG n 1 415 CYS n 1 416 ALA n 1 417 LYS n 1 418 GLY n 1 419 TYR n 1 420 GLN n 1 421 GLN n 1 422 SER n 1 423 ARG n 1 424 SER n 1 425 PRO n 1 426 ILE n 1 427 ALA n 1 428 PRO n 1 429 CYS n 1 430 ILE n 1 431 LYS n 1 432 ILE n 1 433 PRO n 1 434 VAL n 1 435 ALA n 1 436 LEU n 1 437 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Ntn1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ KIDNEY _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCEP-Pu _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NET1_MOUSE _struct_ref.pdbx_db_accession O09118 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RGGPGLSMFAGQAAQPDPCSDENGHPRRCIPDFVNAAFGKDVRVSSTCGRPPARYCVVSERGEERLRSCHLCNSSDPKKA HPPAFLTDLNNPHNLTCWQSENYLQFPHNVTLTLSLGKKFEVTYVSLQFCSPRPESMAIYKSMDYGRTWVPFQFYSTQCR KMYNRPHRAPITKQNEQEAVCTDSHTDMRPLSGGLIAFSTLDGRPSAHDFDNSPVLQDWVTATDIRVAFSRLHTFGDENE DDSELARDSYYYAVSDLQVGGRCKCNGHAARCVRDRDDSLVCDCRHNTAGPECDRCKPFHYDRPWQRATAREANECVACN CNLHARRCRFNMELYKLSGRKSGGVCLNCRHNTAGRHCHYCKEGFYRDMGKPITHRKACKACDCHPVGAAGKTCNQTTGQ CPCKDGVTGITCNRCAKGYQQSRSPIAPCIKIPVA ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4OVE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 435 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O09118 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 457 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 457 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4OVE LEU A 436 ? UNP O09118 ? ? 'expression tag' 458 1 1 4OVE GLU A 437 ? UNP O09118 ? ? 'expression tag' 459 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4OVE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.80 _exptl_crystal.density_percent_sol 74.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES, 2.7-2.8 M NaCl, 0.02-0.2 M glycine, pH 7.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K' # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'RAYONIX MX-300' 2011-10-14 'vertical collimating mirror, toroidal focusing mirror' 2 CCD 'RAYONIX MX-225' 2005-10-12 'dynamically bendable mirror' # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'double crystal monochromator (DCM) with water-cooled first crystal' 'SINGLE WAVELENGTH' x-ray 2 1 M 'liquid nitrogen cooled fixed-exit Si(111) monochromator' SIRAS x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.25440 1.0 2 1.25470 1.0 3 1.25520 1.0 4 1.24210 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'CLSI BEAMLINE 08B1-1' CLSI 08B1-1 ? 1.25440 2 SYNCHROTRON 'SLS BEAMLINE X06SA' SLS X06SA ? '1.25470, 1.25520, 1.24210' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4OVE _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.5 _reflns.number_obs 27279 _reflns.number_all 27279 _reflns.percent_possible_obs 80.9 _reflns.pdbx_Rmerge_I_obs 0.129 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.8 _reflns.B_iso_Wilson_estimate 60.10 _reflns.pdbx_redundancy 10.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4OVE _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 24458 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 2.64 _refine.ls_percent_reflns_obs 89.45 _refine.ls_R_factor_obs 0.233 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.230 _refine.ls_R_factor_R_free 0.288 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1308 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.926 _refine.correlation_coeff_Fo_to_Fc_free 0.862 _refine.B_iso_mean 64.552 _refine.aniso_B[1][1] -0.84 _refine.aniso_B[2][2] -0.84 _refine.aniso_B[3][3] 2.72 _refine.aniso_B[1][2] -0.42 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. The diffraction pattern of Netrin-1 crystals shows strong anisotropy. The resolution limits in direction a*/b* are 44.85 - 2.80 A and in direction c* 44.85 - 2.64 A. Completeness of the dataset in the resolution range of INF - 2.80 A is 0.999, in the range of INF - 2.64 A it is 0.896. The Wilson B-factor calculated from the linear range of the data is 68.0 A**2. The ellipsoidal outer shell in the range of 2.90 - 2.80 A (a*/b*) and 2.74 - 2.64 A (c*) contains 2564 reflections, has a completeness of 1.0, a redundancy of 10.8, I/sigmaI of 2.0, Rmeas of 1.344, Rmerge of 1.280 and Rpim of 0.406. For refinement, an ellipsoidal trunction (limit of 2.80 A in a*/b*, limit of 2.50 A in c*), anisotropic scaling and a negative isotropic B-factor correction of 50% of the B-factor in direction of the lowest fall-off (c*) was applied according to the procedure described by M. Strong, M.R. Sawaya, S. Wang, M. Phillips, D. Cascio, D. Eisenberg, Proc Natl Acad Sci USA. 103, 8060-8-65, 2006. After above anisotropy correction and conversion to amplitudes, the completeness of the refinement dataset is as follows: INF - 2.80 A: 0.996, INF - 2.50 A: 0.807. The Wilson B-factor calculated from the linear range of data is 60.1 A**2. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.362 _refine.pdbx_overall_ESU_R_Free 0.299 _refine.overall_SU_ML 0.267 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 29.397 _refine.overall_SU_R_Cruickshank_DPI 0.3590 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3309 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 105 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 3511 _refine_hist.d_res_high 2.64 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.019 ? 3662 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 3265 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.806 1.988 ? 4985 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.857 3.000 ? 7484 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 13.261 5.148 ? 440 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.259 22.443 ? 176 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.164 15.000 ? 557 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.243 15.000 ? 40 'X-RAY DIFFRACTION' ? r_chiral_restr 0.086 0.200 ? 537 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 4161 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 897 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.621 4.680 ? 1726 'X-RAY DIFFRACTION' ? r_mcbond_other 3.622 4.679 ? 1724 'X-RAY DIFFRACTION' ? r_mcangle_it 5.951 7.013 ? 2163 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.878 5.257 ? 1936 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 4OVE _struct.title 'X-ray Crystal Structure of Mouse Netrin-1' _struct.pdbx_descriptor Netrin-1 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4OVE _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text ;similar to laminin gamma-1, domain VI: beta-sandwich jelly-roll, domains V-1, V-2, V-3: laminin-type epidermal growth factor, structural calcium, axon guidance cue, survival factor, neogenin, DCC, UNC5A, UNC5B, UNC5C, UNC5D, DSCAM, extracellular matrix, APOPTOSIS ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? # _struct_biol.id 1 _struct_biol.details ;Netrin-1 without C-terminal domain forms monomers, dimers, and higher order oligomers in solution, as evidenced by dynamic light scattering (DLS), size exclusion chromatography (SEC), and small angle X-ray scattering (SAXS). In the presence of glycine and high concentrations of sodium chloride, the dimeric form can be stabilized. The asymmetric unit contains one monomer. A dimer that resembles the shape model obtained from SAXS can be obtained by applying the following crystallographic symmetry operation: x-y, -y, -z+1/3. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 82 ? THR A 87 ? PRO A 104 THR A 109 5 ? 6 HELX_P HELX_P2 2 GLN A 158 ? ASN A 164 ? GLN A 180 ASN A 186 1 ? 7 HELX_P HELX_P3 3 THR A 172 ? GLU A 176 ? THR A 194 GLU A 198 5 ? 5 HELX_P HELX_P4 4 ASP A 183 ? ASP A 187 ? ASP A 205 ASP A 209 5 ? 5 HELX_P HELX_P5 5 ARG A 204 ? ASN A 212 ? ARG A 226 ASN A 234 5 ? 9 HELX_P HELX_P6 6 SER A 213 ? VAL A 220 ? SER A 235 VAL A 242 1 ? 8 HELX_P HELX_P7 7 ASN A 331 ? SER A 338 ? ASN A 353 SER A 360 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 19 SG ? ? ? 1_555 A CYS 29 SG ? ? A CYS 41 A CYS 51 1_555 ? ? ? ? ? ? ? 2.051 ? ? disulf2 disulf ? ? A CYS 48 SG ? ? ? 1_555 A CYS 72 SG ? ? A CYS 70 A CYS 94 1_555 ? ? ? ? ? ? ? 2.069 ? ? disulf3 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 69 SG ? ? A CYS 78 A CYS 91 1_555 ? ? ? ? ? ? ? 2.056 ? ? disulf4 disulf ? ? A CYS 97 SG ? ? ? 1_555 A CYS 130 SG ? ? A CYS 119 A CYS 152 1_555 ? ? ? ? ? ? ? 2.081 ? ? disulf5 disulf ? ? A CYS 159 SG ? ? ? 1_555 A CYS 181 SG ? ? A CYS 181 A CYS 203 1_555 ? ? ? ? ? ? ? 2.076 ? ? disulf6 disulf ? ? A CYS 263 SG ? ? ? 1_555 A CYS 272 SG ? ? A CYS 285 A CYS 294 1_555 ? ? ? ? ? ? ? 2.087 ? ? disulf7 disulf ? ? A CYS 265 SG ? ? ? 1_555 A CYS 282 SG ? ? A CYS 287 A CYS 304 1_555 ? ? ? ? ? ? ? 2.063 ? ? disulf8 disulf ? ? A CYS 284 SG ? ? ? 1_555 A CYS 293 SG ? ? A CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? 2.061 ? ? disulf9 disulf ? ? A CYS 296 SG ? ? ? 1_555 A CYS 316 SG ? ? A CYS 318 A CYS 338 1_555 ? ? ? ? ? ? ? 2.078 ? ? disulf10 disulf ? ? A CYS 319 SG ? ? ? 1_555 A CYS 328 SG ? ? A CYS 341 A CYS 350 1_555 ? ? ? ? ? ? ? 1.971 ? ? disulf11 disulf ? ? A CYS 321 SG ? ? ? 1_555 A CYS 346 SG ? ? A CYS 343 A CYS 368 1_555 ? ? ? ? ? ? ? 2.024 ? ? disulf12 disulf ? ? A CYS 349 SG ? ? ? 1_555 A CYS 358 SG ? ? A CYS 371 A CYS 380 1_555 ? ? ? ? ? ? ? 2.051 ? ? disulf13 disulf ? ? A CYS 361 SG ? ? ? 1_555 A CYS 379 SG ? ? A CYS 383 A CYS 401 1_555 ? ? ? ? ? ? ? 2.060 ? ? disulf14 disulf ? ? A CYS 382 SG ? ? ? 1_555 A CYS 394 SG ? ? A CYS 404 A CYS 416 1_555 ? ? ? ? ? ? ? 2.081 ? ? disulf15 disulf ? ? A CYS 384 SG ? ? ? 1_555 A CYS 401 SG ? ? A CYS 406 A CYS 423 1_555 ? ? ? ? ? ? ? 2.066 ? ? disulf16 disulf ? ? A CYS 403 SG ? ? ? 1_555 A CYS 412 SG ? ? A CYS 425 A CYS 434 1_555 ? ? ? ? ? ? ? 2.058 ? ? disulf17 disulf ? ? A CYS 415 SG ? ? ? 1_555 A CYS 429 SG ? ? A CYS 437 A CYS 451 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale one ? A ASN 73 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 95 B NAG 1 1_555 ? ? ? ? ? ? ? 1.457 ? N-Glycosylation covale2 covale one ? A ASN 94 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 116 A NAG 508 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale3 covale one ? A ASN 109 ND2 A ? ? 1_555 C NAG . C1 A ? A ASN 131 C NAG 1 1_555 ? ? ? ? ? ? ? 1.455 ? N-Glycosylation covale4 covale one ? A ASN 109 ND2 C ? ? 1_555 C NAG . C1 C ? A ASN 131 C NAG 1 1_555 ? ? ? ? ? ? ? 1.459 ? N-Glycosylation covale5 covale one ? A ASN 109 ND2 B ? ? 1_555 C NAG . C1 B ? A ASN 131 C NAG 1 1_555 ? ? ? ? ? ? ? 1.465 ? N-Glycosylation covale6 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale7 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.456 ? ? covale8 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.450 ? ? covale9 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 5 1_555 ? ? ? ? ? ? ? 1.471 ? ? covale10 covale both ? C NAG . O4 C ? ? 1_555 C NAG . C1 C ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale11 covale both ? C NAG . O4 A ? ? 1_555 C NAG . C1 A ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale12 covale both ? C NAG . O4 B ? ? 1_555 C NAG . C1 B ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.444 ? ? metalc1 metalc ? ? A PHE 85 O ? ? ? 1_555 E CA . CA ? ? A PHE 107 A CA 509 1_555 ? ? ? ? ? ? ? 2.443 ? ? metalc2 metalc ? ? A ASP 88 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 110 A CA 509 1_555 ? ? ? ? ? ? ? 2.349 ? ? metalc3 metalc ? ? A ASN 90 OD1 ? ? ? 1_555 E CA . CA ? ? A ASN 112 A CA 509 1_555 ? ? ? ? ? ? ? 2.887 ? ? metalc4 metalc ? ? A THR 96 OG1 ? ? ? 1_555 E CA . CA ? ? A THR 118 A CA 509 1_555 ? ? ? ? ? ? ? 2.327 ? ? metalc5 metalc ? ? A THR 96 O ? ? ? 1_555 E CA . CA ? ? A THR 118 A CA 509 1_555 ? ? ? ? ? ? ? 2.543 ? ? metalc6 metalc ? ? A SER 255 O ? ? ? 1_555 E CA . CA ? ? A SER 277 A CA 509 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc7 metalc ? ? E CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 509 A HOH 604 1_555 ? ? ? ? ? ? ? 2.223 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 50 A . ? ARG 72 A PRO 51 A ? PRO 73 A 1 -0.75 2 PHE 106 A . ? PHE 128 A PRO 107 A ? PRO 129 A 1 6.44 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 7 ? C ? 3 ? D ? 2 ? E ? 2 ? F ? 2 ? G ? 2 ? H ? 2 ? I ? 2 ? J ? 2 ? K ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? anti-parallel H 1 2 ? anti-parallel I 1 2 ? anti-parallel J 1 2 ? anti-parallel K 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 34 ? ASN A 35 ? VAL A 56 ASN A 57 A 2 ALA A 253 ? CYS A 263 ? ALA A 275 CYS A 285 B 1 TRP A 98 ? GLN A 99 ? TRP A 120 GLN A 121 B 2 ALA A 253 ? CYS A 263 ? ALA A 275 CYS A 285 B 3 VAL A 110 ? PHE A 129 ? VAL A 132 PHE A 151 B 4 THR A 221 ? ARG A 231 ? THR A 243 ARG A 253 B 5 SER A 136 ? SER A 142 ? SER A 158 SER A 164 B 6 VAL A 150 ? TYR A 155 ? VAL A 172 TYR A 177 B 7 CYS A 181 ? THR A 182 ? CYS A 203 THR A 204 C 1 ARG A 43 ? VAL A 44 ? ARG A 65 VAL A 66 C 2 VAL A 110 ? PHE A 129 ? VAL A 132 PHE A 151 C 3 LEU A 195 ? SER A 199 ? LEU A 217 SER A 221 D 1 ALA A 53 ? SER A 59 ? ALA A 75 SER A 81 D 2 LEU A 66 ? CYS A 72 ? LEU A 88 CYS A 94 E 1 CYS A 272 ? ARG A 274 ? CYS A 294 ARG A 296 E 2 LEU A 280 ? CYS A 282 ? LEU A 302 CYS A 304 F 1 THR A 288 ? ALA A 289 ? THR A 310 ALA A 311 F 2 ARG A 295 ? CYS A 296 ? ARG A 317 CYS A 318 G 1 ARG A 327 ? PHE A 330 ? ARG A 349 PHE A 352 G 2 GLY A 344 ? LEU A 347 ? GLY A 366 LEU A 369 H 1 THR A 353 ? ALA A 354 ? THR A 375 ALA A 376 H 2 TYR A 360 ? CYS A 361 ? TYR A 382 CYS A 383 I 1 PHE A 365 ? ARG A 367 ? PHE A 387 ARG A 389 I 2 CYS A 379 ? ALA A 381 ? CYS A 401 ALA A 403 J 1 VAL A 407 ? THR A 408 ? VAL A 429 THR A 430 J 2 ARG A 414 ? CYS A 415 ? ARG A 436 CYS A 437 K 1 TYR A 419 ? GLN A 421 ? TYR A 441 GLN A 443 K 2 CYS A 429 ? LYS A 431 ? CYS A 451 LYS A 453 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 34 ? N VAL A 56 O GLY A 261 ? O GLY A 283 B 1 2 N TRP A 98 ? N TRP A 120 O VAL A 254 ? O VAL A 276 B 2 3 O ARG A 262 ? O ARG A 284 N GLU A 121 ? N GLU A 143 B 3 4 N LEU A 114 ? N LEU A 136 O ILE A 225 ? O ILE A 247 B 4 5 O ARG A 226 ? O ARG A 248 N TYR A 140 ? N TYR A 162 B 5 6 N ILE A 139 ? N ILE A 161 O PHE A 152 ? O PHE A 174 B 6 7 N PHE A 154 ? N PHE A 176 O THR A 182 ? O THR A 204 C 1 2 N ARG A 43 ? N ARG A 65 O THR A 113 ? O THR A 135 C 2 3 N VAL A 125 ? N VAL A 147 O PHE A 198 ? O PHE A 220 D 1 2 N TYR A 55 ? N TYR A 77 O HIS A 70 ? O HIS A 92 E 1 2 N VAL A 273 ? N VAL A 295 O VAL A 281 ? O VAL A 303 F 1 2 N ALA A 289 ? N ALA A 311 O ARG A 295 ? O ARG A 317 G 1 2 N ARG A 329 ? N ARG A 351 O VAL A 345 ? O VAL A 367 H 1 2 N ALA A 354 ? N ALA A 376 O TYR A 360 ? O TYR A 382 I 1 2 N TYR A 366 ? N TYR A 388 O LYS A 380 ? O LYS A 402 J 1 2 N THR A 408 ? N THR A 430 O ARG A 414 ? O ARG A 436 K 1 2 N GLN A 420 ? N GLN A 442 O ILE A 430 ? O ILE A 452 # _database_PDB_matrix.entry_id 4OVE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4OVE _atom_sites.fract_transf_matrix[1][1] 0.014336 _atom_sites.fract_transf_matrix[1][2] 0.008277 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016554 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.002987 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 23 ? ? ? A . n A 1 2 GLY 2 24 ? ? ? A . n A 1 3 GLY 3 25 ? ? ? A . n A 1 4 PRO 4 26 ? ? ? A . n A 1 5 GLY 5 27 ? ? ? A . n A 1 6 LEU 6 28 ? ? ? A . n A 1 7 SER 7 29 ? ? ? A . n A 1 8 MET 8 30 ? ? ? A . n A 1 9 PHE 9 31 ? ? ? A . n A 1 10 ALA 10 32 ? ? ? A . n A 1 11 GLY 11 33 ? ? ? A . n A 1 12 GLN 12 34 ? ? ? A . n A 1 13 ALA 13 35 35 ALA ALA A . n A 1 14 ALA 14 36 36 ALA ALA A . n A 1 15 GLN 15 37 37 GLN GLN A . n A 1 16 PRO 16 38 38 PRO PRO A . n A 1 17 ASP 17 39 39 ASP ASP A . n A 1 18 PRO 18 40 40 PRO PRO A . n A 1 19 CYS 19 41 41 CYS CYS A . n A 1 20 SER 20 42 42 SER SER A . n A 1 21 ASP 21 43 43 ASP ASP A . n A 1 22 GLU 22 44 44 GLU GLU A . n A 1 23 ASN 23 45 45 ASN ASN A . n A 1 24 GLY 24 46 46 GLY GLY A . n A 1 25 HIS 25 47 47 HIS HIS A . n A 1 26 PRO 26 48 48 PRO PRO A . n A 1 27 ARG 27 49 49 ARG ARG A . n A 1 28 ARG 28 50 50 ARG ARG A . n A 1 29 CYS 29 51 51 CYS CYS A . n A 1 30 ILE 30 52 52 ILE ILE A . n A 1 31 PRO 31 53 53 PRO PRO A . n A 1 32 ASP 32 54 54 ASP ASP A . n A 1 33 PHE 33 55 55 PHE PHE A . n A 1 34 VAL 34 56 56 VAL VAL A . n A 1 35 ASN 35 57 57 ASN ASN A . n A 1 36 ALA 36 58 58 ALA ALA A . n A 1 37 ALA 37 59 59 ALA ALA A . n A 1 38 PHE 38 60 60 PHE PHE A . n A 1 39 GLY 39 61 61 GLY GLY A . n A 1 40 LYS 40 62 62 LYS LYS A . n A 1 41 ASP 41 63 63 ASP ASP A . n A 1 42 VAL 42 64 64 VAL VAL A . n A 1 43 ARG 43 65 65 ARG ARG A . n A 1 44 VAL 44 66 66 VAL VAL A . n A 1 45 SER 45 67 67 SER SER A . n A 1 46 SER 46 68 68 SER SER A . n A 1 47 THR 47 69 69 THR THR A . n A 1 48 CYS 48 70 70 CYS CYS A . n A 1 49 GLY 49 71 71 GLY GLY A . n A 1 50 ARG 50 72 72 ARG ARG A . n A 1 51 PRO 51 73 73 PRO PRO A . n A 1 52 PRO 52 74 74 PRO PRO A . n A 1 53 ALA 53 75 75 ALA ALA A . n A 1 54 ARG 54 76 76 ARG ARG A . n A 1 55 TYR 55 77 77 TYR TYR A . n A 1 56 CYS 56 78 78 CYS CYS A . n A 1 57 VAL 57 79 79 VAL VAL A . n A 1 58 VAL 58 80 80 VAL VAL A . n A 1 59 SER 59 81 81 SER SER A . n A 1 60 GLU 60 82 82 GLU GLU A . n A 1 61 ARG 61 83 83 ARG ARG A . n A 1 62 GLY 62 84 84 GLY GLY A . n A 1 63 GLU 63 85 85 GLU GLU A . n A 1 64 GLU 64 86 86 GLU GLU A . n A 1 65 ARG 65 87 87 ARG ARG A . n A 1 66 LEU 66 88 88 LEU LEU A . n A 1 67 ARG 67 89 89 ARG ARG A . n A 1 68 SER 68 90 90 SER SER A . n A 1 69 CYS 69 91 91 CYS CYS A . n A 1 70 HIS 70 92 92 HIS HIS A . n A 1 71 LEU 71 93 93 LEU LEU A . n A 1 72 CYS 72 94 94 CYS CYS A . n A 1 73 ASN 73 95 95 ASN ASN A . n A 1 74 SER 74 96 96 SER SER A . n A 1 75 SER 75 97 97 SER SER A . n A 1 76 ASP 76 98 98 ASP ASP A . n A 1 77 PRO 77 99 99 PRO PRO A . n A 1 78 LYS 78 100 100 LYS LYS A . n A 1 79 LYS 79 101 101 LYS LYS A . n A 1 80 ALA 80 102 102 ALA ALA A . n A 1 81 HIS 81 103 103 HIS HIS A . n A 1 82 PRO 82 104 104 PRO PRO A . n A 1 83 PRO 83 105 105 PRO PRO A . n A 1 84 ALA 84 106 106 ALA ALA A . n A 1 85 PHE 85 107 107 PHE PHE A . n A 1 86 LEU 86 108 108 LEU LEU A . n A 1 87 THR 87 109 109 THR THR A . n A 1 88 ASP 88 110 110 ASP ASP A . n A 1 89 LEU 89 111 111 LEU LEU A . n A 1 90 ASN 90 112 112 ASN ASN A . n A 1 91 ASN 91 113 113 ASN ASN A . n A 1 92 PRO 92 114 114 PRO PRO A . n A 1 93 HIS 93 115 115 HIS HIS A . n A 1 94 ASN 94 116 116 ASN ASN A . n A 1 95 LEU 95 117 117 LEU LEU A . n A 1 96 THR 96 118 118 THR THR A . n A 1 97 CYS 97 119 119 CYS CYS A . n A 1 98 TRP 98 120 120 TRP TRP A . n A 1 99 GLN 99 121 121 GLN GLN A . n A 1 100 SER 100 122 122 SER SER A . n A 1 101 GLU 101 123 123 GLU GLU A . n A 1 102 ASN 102 124 124 ASN ASN A . n A 1 103 TYR 103 125 125 TYR TYR A . n A 1 104 LEU 104 126 126 LEU LEU A . n A 1 105 GLN 105 127 127 GLN GLN A . n A 1 106 PHE 106 128 128 PHE PHE A . n A 1 107 PRO 107 129 129 PRO PRO A . n A 1 108 HIS 108 130 130 HIS HIS A . n A 1 109 ASN 109 131 131 ASN ASN A . n A 1 110 VAL 110 132 132 VAL VAL A . n A 1 111 THR 111 133 133 THR THR A . n A 1 112 LEU 112 134 134 LEU LEU A . n A 1 113 THR 113 135 135 THR THR A . n A 1 114 LEU 114 136 136 LEU LEU A . n A 1 115 SER 115 137 137 SER SER A . n A 1 116 LEU 116 138 138 LEU LEU A . n A 1 117 GLY 117 139 139 GLY GLY A . n A 1 118 LYS 118 140 140 LYS LYS A . n A 1 119 LYS 119 141 141 LYS LYS A . n A 1 120 PHE 120 142 142 PHE PHE A . n A 1 121 GLU 121 143 143 GLU GLU A . n A 1 122 VAL 122 144 144 VAL VAL A . n A 1 123 THR 123 145 145 THR THR A . n A 1 124 TYR 124 146 146 TYR TYR A . n A 1 125 VAL 125 147 147 VAL VAL A . n A 1 126 SER 126 148 148 SER SER A . n A 1 127 LEU 127 149 149 LEU LEU A . n A 1 128 GLN 128 150 150 GLN GLN A . n A 1 129 PHE 129 151 151 PHE PHE A . n A 1 130 CYS 130 152 152 CYS CYS A . n A 1 131 SER 131 153 153 SER SER A . n A 1 132 PRO 132 154 154 PRO PRO A . n A 1 133 ARG 133 155 155 ARG ARG A . n A 1 134 PRO 134 156 156 PRO PRO A . n A 1 135 GLU 135 157 157 GLU GLU A . n A 1 136 SER 136 158 158 SER SER A . n A 1 137 MET 137 159 159 MET MET A . n A 1 138 ALA 138 160 160 ALA ALA A . n A 1 139 ILE 139 161 161 ILE ILE A . n A 1 140 TYR 140 162 162 TYR TYR A . n A 1 141 LYS 141 163 163 LYS LYS A . n A 1 142 SER 142 164 164 SER SER A . n A 1 143 MET 143 165 165 MET MET A . n A 1 144 ASP 144 166 166 ASP ASP A . n A 1 145 TYR 145 167 167 TYR TYR A . n A 1 146 GLY 146 168 168 GLY GLY A . n A 1 147 ARG 147 169 169 ARG ARG A . n A 1 148 THR 148 170 170 THR THR A . n A 1 149 TRP 149 171 171 TRP TRP A . n A 1 150 VAL 150 172 172 VAL VAL A . n A 1 151 PRO 151 173 173 PRO PRO A . n A 1 152 PHE 152 174 174 PHE PHE A . n A 1 153 GLN 153 175 175 GLN GLN A . n A 1 154 PHE 154 176 176 PHE PHE A . n A 1 155 TYR 155 177 177 TYR TYR A . n A 1 156 SER 156 178 178 SER SER A . n A 1 157 THR 157 179 179 THR THR A . n A 1 158 GLN 158 180 180 GLN GLN A . n A 1 159 CYS 159 181 181 CYS CYS A . n A 1 160 ARG 160 182 182 ARG ARG A . n A 1 161 LYS 161 183 183 LYS LYS A . n A 1 162 MET 162 184 184 MET MET A . n A 1 163 TYR 163 185 185 TYR TYR A . n A 1 164 ASN 164 186 186 ASN ASN A . n A 1 165 ARG 165 187 187 ARG ARG A . n A 1 166 PRO 166 188 188 PRO PRO A . n A 1 167 HIS 167 189 189 HIS HIS A . n A 1 168 ARG 168 190 190 ARG ARG A . n A 1 169 ALA 169 191 191 ALA ALA A . n A 1 170 PRO 170 192 192 PRO PRO A . n A 1 171 ILE 171 193 193 ILE ILE A . n A 1 172 THR 172 194 194 THR THR A . n A 1 173 LYS 173 195 195 LYS LYS A . n A 1 174 GLN 174 196 196 GLN GLN A . n A 1 175 ASN 175 197 197 ASN ASN A . n A 1 176 GLU 176 198 198 GLU GLU A . n A 1 177 GLN 177 199 199 GLN GLN A . n A 1 178 GLU 178 200 200 GLU GLU A . n A 1 179 ALA 179 201 201 ALA ALA A . n A 1 180 VAL 180 202 202 VAL VAL A . n A 1 181 CYS 181 203 203 CYS CYS A . n A 1 182 THR 182 204 204 THR THR A . n A 1 183 ASP 183 205 205 ASP ASP A . n A 1 184 SER 184 206 206 SER SER A . n A 1 185 HIS 185 207 207 HIS HIS A . n A 1 186 THR 186 208 208 THR THR A . n A 1 187 ASP 187 209 209 ASP ASP A . n A 1 188 MET 188 210 210 MET MET A . n A 1 189 ARG 189 211 211 ARG ARG A . n A 1 190 PRO 190 212 212 PRO PRO A . n A 1 191 LEU 191 213 213 LEU LEU A . n A 1 192 SER 192 214 214 SER SER A . n A 1 193 GLY 193 215 215 GLY GLY A . n A 1 194 GLY 194 216 216 GLY GLY A . n A 1 195 LEU 195 217 217 LEU LEU A . n A 1 196 ILE 196 218 218 ILE ILE A . n A 1 197 ALA 197 219 219 ALA ALA A . n A 1 198 PHE 198 220 220 PHE PHE A . n A 1 199 SER 199 221 221 SER SER A . n A 1 200 THR 200 222 222 THR THR A . n A 1 201 LEU 201 223 223 LEU LEU A . n A 1 202 ASP 202 224 224 ASP ASP A . n A 1 203 GLY 203 225 225 GLY GLY A . n A 1 204 ARG 204 226 226 ARG ARG A . n A 1 205 PRO 205 227 227 PRO PRO A . n A 1 206 SER 206 228 228 SER SER A . n A 1 207 ALA 207 229 229 ALA ALA A . n A 1 208 HIS 208 230 230 HIS HIS A . n A 1 209 ASP 209 231 231 ASP ASP A . n A 1 210 PHE 210 232 232 PHE PHE A . n A 1 211 ASP 211 233 233 ASP ASP A . n A 1 212 ASN 212 234 234 ASN ASN A . n A 1 213 SER 213 235 235 SER SER A . n A 1 214 PRO 214 236 236 PRO PRO A . n A 1 215 VAL 215 237 237 VAL VAL A . n A 1 216 LEU 216 238 238 LEU LEU A . n A 1 217 GLN 217 239 239 GLN GLN A . n A 1 218 ASP 218 240 240 ASP ASP A . n A 1 219 TRP 219 241 241 TRP TRP A . n A 1 220 VAL 220 242 242 VAL VAL A . n A 1 221 THR 221 243 243 THR THR A . n A 1 222 ALA 222 244 244 ALA ALA A . n A 1 223 THR 223 245 245 THR THR A . n A 1 224 ASP 224 246 246 ASP ASP A . n A 1 225 ILE 225 247 247 ILE ILE A . n A 1 226 ARG 226 248 248 ARG ARG A . n A 1 227 VAL 227 249 249 VAL VAL A . n A 1 228 ALA 228 250 250 ALA ALA A . n A 1 229 PHE 229 251 251 PHE PHE A . n A 1 230 SER 230 252 252 SER SER A . n A 1 231 ARG 231 253 253 ARG ARG A . n A 1 232 LEU 232 254 254 LEU LEU A . n A 1 233 HIS 233 255 255 HIS HIS A . n A 1 234 THR 234 256 256 THR THR A . n A 1 235 PHE 235 257 257 PHE PHE A . n A 1 236 GLY 236 258 258 GLY GLY A . n A 1 237 ASP 237 259 259 ASP ASP A . n A 1 238 GLU 238 260 260 GLU GLU A . n A 1 239 ASN 239 261 261 ASN ASN A . n A 1 240 GLU 240 262 262 GLU GLU A . n A 1 241 ASP 241 263 263 ASP ASP A . n A 1 242 ASP 242 264 264 ASP ASP A . n A 1 243 SER 243 265 265 SER SER A . n A 1 244 GLU 244 266 266 GLU GLU A . n A 1 245 LEU 245 267 267 LEU LEU A . n A 1 246 ALA 246 268 268 ALA ALA A . n A 1 247 ARG 247 269 269 ARG ARG A . n A 1 248 ASP 248 270 270 ASP ASP A . n A 1 249 SER 249 271 271 SER SER A . n A 1 250 TYR 250 272 272 TYR TYR A . n A 1 251 TYR 251 273 273 TYR TYR A . n A 1 252 TYR 252 274 274 TYR TYR A . n A 1 253 ALA 253 275 275 ALA ALA A . n A 1 254 VAL 254 276 276 VAL VAL A . n A 1 255 SER 255 277 277 SER SER A . n A 1 256 ASP 256 278 278 ASP ASP A . n A 1 257 LEU 257 279 279 LEU LEU A . n A 1 258 GLN 258 280 280 GLN GLN A . n A 1 259 VAL 259 281 281 VAL VAL A . n A 1 260 GLY 260 282 282 GLY GLY A . n A 1 261 GLY 261 283 283 GLY GLY A . n A 1 262 ARG 262 284 284 ARG ARG A . n A 1 263 CYS 263 285 285 CYS CYS A . n A 1 264 LYS 264 286 286 LYS LYS A . n A 1 265 CYS 265 287 287 CYS CYS A . n A 1 266 ASN 266 288 288 ASN ASN A . n A 1 267 GLY 267 289 289 GLY GLY A . n A 1 268 HIS 268 290 290 HIS HIS A . n A 1 269 ALA 269 291 291 ALA ALA A . n A 1 270 ALA 270 292 292 ALA ALA A . n A 1 271 ARG 271 293 293 ARG ARG A . n A 1 272 CYS 272 294 294 CYS CYS A . n A 1 273 VAL 273 295 295 VAL VAL A . n A 1 274 ARG 274 296 296 ARG ARG A . n A 1 275 ASP 275 297 297 ASP ASP A . n A 1 276 ARG 276 298 298 ARG ARG A . n A 1 277 ASP 277 299 299 ASP ASP A . n A 1 278 ASP 278 300 300 ASP ASP A . n A 1 279 SER 279 301 301 SER SER A . n A 1 280 LEU 280 302 302 LEU LEU A . n A 1 281 VAL 281 303 303 VAL VAL A . n A 1 282 CYS 282 304 304 CYS CYS A . n A 1 283 ASP 283 305 305 ASP ASP A . n A 1 284 CYS 284 306 306 CYS CYS A . n A 1 285 ARG 285 307 307 ARG ARG A . n A 1 286 HIS 286 308 308 HIS HIS A . n A 1 287 ASN 287 309 309 ASN ASN A . n A 1 288 THR 288 310 310 THR THR A . n A 1 289 ALA 289 311 311 ALA ALA A . n A 1 290 GLY 290 312 312 GLY GLY A . n A 1 291 PRO 291 313 313 PRO PRO A . n A 1 292 GLU 292 314 314 GLU GLU A . n A 1 293 CYS 293 315 315 CYS CYS A . n A 1 294 ASP 294 316 316 ASP ASP A . n A 1 295 ARG 295 317 317 ARG ARG A . n A 1 296 CYS 296 318 318 CYS CYS A . n A 1 297 LYS 297 319 319 LYS LYS A . n A 1 298 PRO 298 320 320 PRO PRO A . n A 1 299 PHE 299 321 321 PHE PHE A . n A 1 300 HIS 300 322 322 HIS HIS A . n A 1 301 TYR 301 323 323 TYR TYR A . n A 1 302 ASP 302 324 324 ASP ASP A . n A 1 303 ARG 303 325 325 ARG ARG A . n A 1 304 PRO 304 326 326 PRO PRO A . n A 1 305 TRP 305 327 327 TRP TRP A . n A 1 306 GLN 306 328 328 GLN GLN A . n A 1 307 ARG 307 329 329 ARG ARG A . n A 1 308 ALA 308 330 330 ALA ALA A . n A 1 309 THR 309 331 331 THR THR A . n A 1 310 ALA 310 332 332 ALA ALA A . n A 1 311 ARG 311 333 333 ARG ARG A . n A 1 312 GLU 312 334 334 GLU GLU A . n A 1 313 ALA 313 335 335 ALA ALA A . n A 1 314 ASN 314 336 336 ASN ASN A . n A 1 315 GLU 315 337 337 GLU GLU A . n A 1 316 CYS 316 338 338 CYS CYS A . n A 1 317 VAL 317 339 339 VAL VAL A . n A 1 318 ALA 318 340 340 ALA ALA A . n A 1 319 CYS 319 341 341 CYS CYS A . n A 1 320 ASN 320 342 342 ASN ASN A . n A 1 321 CYS 321 343 343 CYS CYS A . n A 1 322 ASN 322 344 344 ASN ASN A . n A 1 323 LEU 323 345 345 LEU LEU A . n A 1 324 HIS 324 346 346 HIS HIS A . n A 1 325 ALA 325 347 347 ALA ALA A . n A 1 326 ARG 326 348 348 ARG ARG A . n A 1 327 ARG 327 349 349 ARG ARG A . n A 1 328 CYS 328 350 350 CYS CYS A . n A 1 329 ARG 329 351 351 ARG ARG A . n A 1 330 PHE 330 352 352 PHE PHE A . n A 1 331 ASN 331 353 353 ASN ASN A . n A 1 332 MET 332 354 354 MET MET A . n A 1 333 GLU 333 355 355 GLU GLU A . n A 1 334 LEU 334 356 356 LEU LEU A . n A 1 335 TYR 335 357 357 TYR TYR A . n A 1 336 LYS 336 358 358 LYS LYS A . n A 1 337 LEU 337 359 359 LEU LEU A . n A 1 338 SER 338 360 360 SER SER A . n A 1 339 GLY 339 361 361 GLY GLY A . n A 1 340 ARG 340 362 362 ARG ARG A . n A 1 341 LYS 341 363 363 LYS LYS A . n A 1 342 SER 342 364 364 SER SER A . n A 1 343 GLY 343 365 365 GLY GLY A . n A 1 344 GLY 344 366 366 GLY GLY A . n A 1 345 VAL 345 367 367 VAL VAL A . n A 1 346 CYS 346 368 368 CYS CYS A . n A 1 347 LEU 347 369 369 LEU LEU A . n A 1 348 ASN 348 370 370 ASN ASN A . n A 1 349 CYS 349 371 371 CYS CYS A . n A 1 350 ARG 350 372 372 ARG ARG A . n A 1 351 HIS 351 373 373 HIS HIS A . n A 1 352 ASN 352 374 374 ASN ASN A . n A 1 353 THR 353 375 375 THR THR A . n A 1 354 ALA 354 376 376 ALA ALA A . n A 1 355 GLY 355 377 377 GLY GLY A . n A 1 356 ARG 356 378 378 ARG ARG A . n A 1 357 HIS 357 379 379 HIS HIS A . n A 1 358 CYS 358 380 380 CYS CYS A . n A 1 359 HIS 359 381 381 HIS HIS A . n A 1 360 TYR 360 382 382 TYR TYR A . n A 1 361 CYS 361 383 383 CYS CYS A . n A 1 362 LYS 362 384 384 LYS LYS A . n A 1 363 GLU 363 385 385 GLU GLU A . n A 1 364 GLY 364 386 386 GLY GLY A . n A 1 365 PHE 365 387 387 PHE PHE A . n A 1 366 TYR 366 388 388 TYR TYR A . n A 1 367 ARG 367 389 389 ARG ARG A . n A 1 368 ASP 368 390 390 ASP ASP A . n A 1 369 MET 369 391 391 MET MET A . n A 1 370 GLY 370 392 392 GLY GLY A . n A 1 371 LYS 371 393 393 LYS LYS A . n A 1 372 PRO 372 394 394 PRO PRO A . n A 1 373 ILE 373 395 395 ILE ILE A . n A 1 374 THR 374 396 396 THR THR A . n A 1 375 HIS 375 397 397 HIS HIS A . n A 1 376 ARG 376 398 398 ARG ARG A . n A 1 377 LYS 377 399 399 LYS LYS A . n A 1 378 ALA 378 400 400 ALA ALA A . n A 1 379 CYS 379 401 401 CYS CYS A . n A 1 380 LYS 380 402 402 LYS LYS A . n A 1 381 ALA 381 403 403 ALA ALA A . n A 1 382 CYS 382 404 404 CYS CYS A . n A 1 383 ASP 383 405 405 ASP ASP A . n A 1 384 CYS 384 406 406 CYS CYS A . n A 1 385 HIS 385 407 407 HIS HIS A . n A 1 386 PRO 386 408 408 PRO PRO A . n A 1 387 VAL 387 409 409 VAL VAL A . n A 1 388 GLY 388 410 410 GLY GLY A . n A 1 389 ALA 389 411 411 ALA ALA A . n A 1 390 ALA 390 412 412 ALA ALA A . n A 1 391 GLY 391 413 413 GLY GLY A . n A 1 392 LYS 392 414 414 LYS LYS A . n A 1 393 THR 393 415 415 THR THR A . n A 1 394 CYS 394 416 416 CYS CYS A . n A 1 395 ASN 395 417 417 ASN ASN A . n A 1 396 GLN 396 418 418 GLN GLN A . n A 1 397 THR 397 419 419 THR THR A . n A 1 398 THR 398 420 420 THR THR A . n A 1 399 GLY 399 421 421 GLY GLY A . n A 1 400 GLN 400 422 422 GLN GLN A . n A 1 401 CYS 401 423 423 CYS CYS A . n A 1 402 PRO 402 424 424 PRO PRO A . n A 1 403 CYS 403 425 425 CYS CYS A . n A 1 404 LYS 404 426 426 LYS LYS A . n A 1 405 ASP 405 427 427 ASP ASP A . n A 1 406 GLY 406 428 428 GLY GLY A . n A 1 407 VAL 407 429 429 VAL VAL A . n A 1 408 THR 408 430 430 THR THR A . n A 1 409 GLY 409 431 431 GLY GLY A . n A 1 410 ILE 410 432 432 ILE ILE A . n A 1 411 THR 411 433 433 THR THR A . n A 1 412 CYS 412 434 434 CYS CYS A . n A 1 413 ASN 413 435 435 ASN ASN A . n A 1 414 ARG 414 436 436 ARG ARG A . n A 1 415 CYS 415 437 437 CYS CYS A . n A 1 416 ALA 416 438 438 ALA ALA A . n A 1 417 LYS 417 439 439 LYS LYS A . n A 1 418 GLY 418 440 440 GLY GLY A . n A 1 419 TYR 419 441 441 TYR TYR A . n A 1 420 GLN 420 442 442 GLN GLN A . n A 1 421 GLN 421 443 443 GLN GLN A . n A 1 422 SER 422 444 444 SER SER A . n A 1 423 ARG 423 445 445 ARG ARG A . n A 1 424 SER 424 446 446 SER SER A . n A 1 425 PRO 425 447 447 PRO PRO A . n A 1 426 ILE 426 448 448 ILE ILE A . n A 1 427 ALA 427 449 449 ALA ALA A . n A 1 428 PRO 428 450 450 PRO PRO A . n A 1 429 CYS 429 451 451 CYS CYS A . n A 1 430 ILE 430 452 452 ILE ILE A . n A 1 431 LYS 431 453 453 LYS LYS A . n A 1 432 ILE 432 454 454 ILE ILE A . n A 1 433 PRO 433 455 455 PRO PRO A . n A 1 434 VAL 434 456 456 VAL VAL A . n A 1 435 ALA 435 457 ? ? ? A . n A 1 436 LEU 436 458 ? ? ? A . n A 1 437 GLU 437 459 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 508 1 NAG NAG A . E 5 CA 1 509 1 CA CA A . F 6 CL 1 510 1 CL CL A . G 7 HOH 1 601 1 HOH HOH A . G 7 HOH 2 602 2 HOH HOH A . G 7 HOH 3 603 3 HOH HOH A . G 7 HOH 4 604 4 HOH HOH A . G 7 HOH 5 605 5 HOH HOH A . G 7 HOH 6 606 6 HOH HOH A . G 7 HOH 7 607 7 HOH HOH A . G 7 HOH 8 608 8 HOH HOH A . G 7 HOH 9 609 9 HOH HOH A . G 7 HOH 10 610 10 HOH HOH A . G 7 HOH 11 611 11 HOH HOH A . G 7 HOH 12 612 12 HOH HOH A . G 7 HOH 13 613 13 HOH HOH A . G 7 HOH 14 614 14 HOH HOH A . G 7 HOH 15 615 15 HOH HOH A . G 7 HOH 16 616 16 HOH HOH A . G 7 HOH 17 617 17 HOH HOH A . G 7 HOH 18 618 18 HOH HOH A . G 7 HOH 19 619 19 HOH HOH A . G 7 HOH 20 620 20 HOH HOH A . G 7 HOH 21 621 21 HOH HOH A . G 7 HOH 22 622 22 HOH HOH A . G 7 HOH 23 623 23 HOH HOH A . G 7 HOH 24 624 24 HOH HOH A . G 7 HOH 25 625 25 HOH HOH A . G 7 HOH 26 626 26 HOH HOH A . G 7 HOH 27 627 27 HOH HOH A . G 7 HOH 28 628 28 HOH HOH A . G 7 HOH 29 629 29 HOH HOH A . G 7 HOH 30 630 30 HOH HOH A . G 7 HOH 31 631 31 HOH HOH A . G 7 HOH 32 632 32 HOH HOH A . G 7 HOH 33 633 33 HOH HOH A . G 7 HOH 34 634 34 HOH HOH A . G 7 HOH 35 635 35 HOH HOH A . G 7 HOH 36 636 36 HOH HOH A . G 7 HOH 37 637 37 HOH HOH A . G 7 HOH 38 638 38 HOH HOH A . G 7 HOH 39 639 39 HOH HOH A . G 7 HOH 40 640 40 HOH HOH A . G 7 HOH 41 641 41 HOH HOH A . G 7 HOH 42 642 42 HOH HOH A . G 7 HOH 43 643 43 HOH HOH A . G 7 HOH 44 644 44 HOH HOH A . G 7 HOH 45 645 45 HOH HOH A . G 7 HOH 46 646 46 HOH HOH A . G 7 HOH 47 647 47 HOH HOH A . G 7 HOH 48 648 48 HOH HOH A . G 7 HOH 49 649 49 HOH HOH A . G 7 HOH 50 650 50 HOH HOH A . G 7 HOH 51 651 51 HOH HOH A . G 7 HOH 52 652 52 HOH HOH A . G 7 HOH 53 653 53 HOH HOH A . G 7 HOH 54 654 54 HOH HOH A . G 7 HOH 55 655 55 HOH HOH A . G 7 HOH 56 656 56 HOH HOH A . G 7 HOH 57 657 57 HOH HOH A . G 7 HOH 58 658 58 HOH HOH A . G 7 HOH 59 659 59 HOH HOH A . G 7 HOH 60 660 60 HOH HOH A . G 7 HOH 61 661 61 HOH HOH A . G 7 HOH 62 662 62 HOH HOH A . G 7 HOH 63 663 63 HOH HOH A . G 7 HOH 64 664 64 HOH HOH A . G 7 HOH 65 665 65 HOH HOH A . G 7 HOH 66 666 66 HOH HOH A . G 7 HOH 67 667 67 HOH HOH A . G 7 HOH 68 668 68 HOH HOH A . G 7 HOH 69 669 69 HOH HOH A . G 7 HOH 70 670 70 HOH HOH A . G 7 HOH 71 671 71 HOH HOH A . G 7 HOH 72 672 72 HOH HOH A . G 7 HOH 73 673 73 HOH HOH A . G 7 HOH 74 674 74 HOH HOH A . G 7 HOH 75 675 75 HOH HOH A . G 7 HOH 76 676 76 HOH HOH A . G 7 HOH 77 677 77 HOH HOH A . G 7 HOH 78 678 78 HOH HOH A . G 7 HOH 79 679 79 HOH HOH A . G 7 HOH 80 680 80 HOH HOH A . G 7 HOH 81 681 81 HOH HOH A . G 7 HOH 82 682 82 HOH HOH A . G 7 HOH 83 683 83 HOH HOH A . G 7 HOH 84 684 84 HOH HOH A . G 7 HOH 85 685 85 HOH HOH A . G 7 HOH 86 686 86 HOH HOH A . G 7 HOH 87 687 87 HOH HOH A . G 7 HOH 88 688 88 HOH HOH A . G 7 HOH 89 689 89 HOH HOH A . G 7 HOH 90 690 90 HOH HOH A . G 7 HOH 91 691 91 HOH HOH A . G 7 HOH 92 692 92 HOH HOH A . G 7 HOH 93 693 93 HOH HOH A . G 7 HOH 94 694 94 HOH HOH A . G 7 HOH 95 695 95 HOH HOH A . G 7 HOH 96 696 96 HOH HOH A . G 7 HOH 97 697 97 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 94 A ASN 116 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 109 A ASN 131 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 73 A ASN 95 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6770 ? 1 MORE -9 ? 1 'SSA (A^2)' 46900 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 111.6006666667 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A PHE 85 ? A PHE 107 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 OD1 ? A ASP 88 ? A ASP 110 ? 1_555 69.6 ? 2 O ? A PHE 85 ? A PHE 107 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 OD1 ? A ASN 90 ? A ASN 112 ? 1_555 159.0 ? 3 OD1 ? A ASP 88 ? A ASP 110 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 OD1 ? A ASN 90 ? A ASN 112 ? 1_555 120.6 ? 4 O ? A PHE 85 ? A PHE 107 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 OG1 ? A THR 96 ? A THR 118 ? 1_555 90.7 ? 5 OD1 ? A ASP 88 ? A ASP 110 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 OG1 ? A THR 96 ? A THR 118 ? 1_555 77.2 ? 6 OD1 ? A ASN 90 ? A ASN 112 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 OG1 ? A THR 96 ? A THR 118 ? 1_555 109.1 ? 7 O ? A PHE 85 ? A PHE 107 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? A THR 96 ? A THR 118 ? 1_555 85.4 ? 8 OD1 ? A ASP 88 ? A ASP 110 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? A THR 96 ? A THR 118 ? 1_555 139.4 ? 9 OD1 ? A ASN 90 ? A ASN 112 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? A THR 96 ? A THR 118 ? 1_555 94.1 ? 10 OG1 ? A THR 96 ? A THR 118 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? A THR 96 ? A THR 118 ? 1_555 71.4 ? 11 O ? A PHE 85 ? A PHE 107 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? A SER 255 ? A SER 277 ? 1_555 81.2 ? 12 OD1 ? A ASP 88 ? A ASP 110 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? A SER 255 ? A SER 277 ? 1_555 127.8 ? 13 OD1 ? A ASN 90 ? A ASN 112 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? A SER 255 ? A SER 277 ? 1_555 78.3 ? 14 OG1 ? A THR 96 ? A THR 118 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? A SER 255 ? A SER 277 ? 1_555 147.1 ? 15 O ? A THR 96 ? A THR 118 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? A SER 255 ? A SER 277 ? 1_555 76.1 ? 16 O ? A PHE 85 ? A PHE 107 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? G HOH . ? A HOH 604 ? 1_555 89.5 ? 17 OD1 ? A ASP 88 ? A ASP 110 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? G HOH . ? A HOH 604 ? 1_555 68.5 ? 18 OD1 ? A ASN 90 ? A ASN 112 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? G HOH . ? A HOH 604 ? 1_555 78.9 ? 19 OG1 ? A THR 96 ? A THR 118 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? G HOH . ? A HOH 604 ? 1_555 143.3 ? 20 O ? A THR 96 ? A THR 118 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? G HOH . ? A HOH 604 ? 1_555 145.0 ? 21 O ? A SER 255 ? A SER 277 ? 1_555 CA ? E CA . ? A CA 509 ? 1_555 O ? G HOH . ? A HOH 604 ? 1_555 68.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-02-25 2 'Structure model' 1 1 2015-03-11 3 'Structure model' 1 2 2016-02-17 4 'Structure model' 1 3 2017-10-25 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 5 'Structure model' 'Atomic model' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_struct_assembly_auth_evidence 2 5 'Structure model' atom_site 3 5 'Structure model' atom_site_anisotrop 4 5 'Structure model' chem_comp 5 5 'Structure model' entity 6 5 'Structure model' pdbx_branch_scheme 7 5 'Structure model' pdbx_chem_comp_identifier 8 5 'Structure model' pdbx_entity_branch 9 5 'Structure model' pdbx_entity_branch_descriptor 10 5 'Structure model' pdbx_entity_branch_link 11 5 'Structure model' pdbx_entity_branch_list 12 5 'Structure model' pdbx_entity_nonpoly 13 5 'Structure model' pdbx_nonpoly_scheme 14 5 'Structure model' pdbx_struct_assembly_gen 15 5 'Structure model' pdbx_struct_conn_angle 16 5 'Structure model' struct_asym 17 5 'Structure model' struct_conn 18 5 'Structure model' struct_ref_seq_dif 19 5 'Structure model' struct_site 20 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.auth_asym_id' 2 5 'Structure model' '_atom_site.auth_seq_id' 3 5 'Structure model' '_atom_site.label_asym_id' 4 5 'Structure model' '_atom_site.label_entity_id' 5 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 6 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 7 5 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 8 5 'Structure model' '_chem_comp.name' 9 5 'Structure model' '_chem_comp.type' 10 5 'Structure model' '_entity.formula_weight' 11 5 'Structure model' '_entity.pdbx_description' 12 5 'Structure model' '_entity.pdbx_number_of_molecules' 13 5 'Structure model' '_entity.type' 14 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 28 5 'Structure model' '_pdbx_struct_conn_angle.value' 29 5 'Structure model' '_struct_conn.pdbx_dist_value' 30 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 31 5 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 32 5 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 33 5 'Structure model' '_struct_conn.pdbx_role' 34 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 35 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 36 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 37 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 38 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 39 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 40 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 41 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 42 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 43 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 44 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 45 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 46 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 47 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 48 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 29.0771 _pdbx_refine_tls.origin_y 15.8929 _pdbx_refine_tls.origin_z 3.8209 _pdbx_refine_tls.T[1][1] 0.0711 _pdbx_refine_tls.T[2][2] 0.0822 _pdbx_refine_tls.T[3][3] 0.0237 _pdbx_refine_tls.T[1][2] 0.0258 _pdbx_refine_tls.T[1][3] 0.0085 _pdbx_refine_tls.T[2][3] 0.0231 _pdbx_refine_tls.L[1][1] 0.5237 _pdbx_refine_tls.L[2][2] 0.3894 _pdbx_refine_tls.L[3][3] 4.0219 _pdbx_refine_tls.L[1][2] 0.3001 _pdbx_refine_tls.L[1][3] -0.9402 _pdbx_refine_tls.L[2][3] -0.9701 _pdbx_refine_tls.S[1][1] -0.0510 _pdbx_refine_tls.S[1][2] 0.1256 _pdbx_refine_tls.S[1][3] 0.0392 _pdbx_refine_tls.S[2][1] -0.0033 _pdbx_refine_tls.S[2][2] 0.0180 _pdbx_refine_tls.S[2][3] -0.0184 _pdbx_refine_tls.S[3][1] -0.0270 _pdbx_refine_tls.S[3][2] -0.2278 _pdbx_refine_tls.S[3][3] 0.0331 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 35 ? ? A 456 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 509 ? ? A 509 ? ? ? ? 'X-RAY DIFFRACTION' 3 1 A 501 ? ? A 505 ? ? ? ? 'X-RAY DIFFRACTION' 4 1 A 506 ? ? A 507 ? ? ? ? 'X-RAY DIFFRACTION' 5 1 A 508 ? ? A 508 ? ? ? ? 'X-RAY DIFFRACTION' 6 1 A 510 ? ? A 510 ? ? ? ? 'X-RAY DIFFRACTION' 7 1 A 601 ? ? A 697 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SHARP phasing . ? 2 REFMAC refinement 5.8.0049 ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N A HIS 373 ? ? O A HOH 691 ? ? 2.05 2 1 OD1 A ASN 131 ? A OG A SER 252 ? ? 2.06 3 1 OG1 A THR 375 ? ? O A HOH 691 ? ? 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 74 ? ? -47.50 151.32 2 1 HIS A 115 ? ? 74.80 -4.47 3 1 ASN A 116 ? ? -163.39 47.17 4 1 SER A 178 ? ? 178.98 155.12 5 1 ASP A 259 ? ? 77.66 -60.78 6 1 SER A 265 ? ? -66.09 91.28 7 1 ASP A 299 ? ? 84.25 6.51 8 1 HIS A 373 ? ? -119.90 56.23 9 1 CYS A 380 ? ? 37.72 55.20 10 1 ASP A 390 ? ? -67.16 93.50 11 1 LYS A 399 ? ? 73.50 44.29 12 1 ASP A 405 ? ? -113.69 56.08 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 23 ? A ARG 1 2 1 Y 1 A GLY 24 ? A GLY 2 3 1 Y 1 A GLY 25 ? A GLY 3 4 1 Y 1 A PRO 26 ? A PRO 4 5 1 Y 1 A GLY 27 ? A GLY 5 6 1 Y 1 A LEU 28 ? A LEU 6 7 1 Y 1 A SER 29 ? A SER 7 8 1 Y 1 A MET 30 ? A MET 8 9 1 Y 1 A PHE 31 ? A PHE 9 10 1 Y 1 A ALA 32 ? A ALA 10 11 1 Y 1 A GLY 33 ? A GLY 11 12 1 Y 1 A GLN 34 ? A GLN 12 13 1 Y 1 A ALA 457 ? A ALA 435 14 1 Y 1 A LEU 458 ? A LEU 436 15 1 Y 1 A GLU 459 ? A GLU 437 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 C NAG 1 n B 2 NAG 2 B NAG 2 C NAG 2 n B 2 BMA 3 B BMA 3 C BMA 3 n B 2 MAN 4 B MAN 4 C MAN 4 n B 2 MAN 5 B MAN 5 C MAN 5 n C 3 NAG 1 C NAG 1 D NAG 1 n C 3 NAG 2 C NAG 2 D NAG 2 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ? 4 3 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 6 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 2 5 MAN C1 O1 3 BMA O6 HO6 sing ? 5 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 MAN 5 n 3 NAG 1 n 3 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 'CALCIUM ION' CA 6 'CHLORIDE ION' CL 7 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'light scattering' ? 2 1 'gel filtration' ? 3 1 SAXS ? #