HEADER TRANSCRIPTION 12-FEB-14 4OZ1 TITLE CRYSTAL STRUCTURE OF HUMAN CAPERALPHA UHM BOUND TO SF3B155 ULM5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 39; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: 417-530; COMPND 5 SYNONYM: HEPATOCELLULAR CARCINOMA PROTEIN 1, RNA-BINDING MOTIF COMPND 6 PROTEIN 39, RNA-BINDING REGION-CONTAINING PROTEIN 2, SPLICING FACTOR COMPND 7 HCC1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SPLICING FACTOR 3B SUBUNIT 1; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: 333-342; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: ISOFORM B; SOURCE 6 GENE: CAPER, CAPERALPHA, FSAP59, HCC1, RBM39, RNPC2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-6P; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS U2AF HOMOLOGY MOTIF, UHM, PROTEIN-PEPTIDE COMPLEX, PRE-MRNA SPLICING KEYWDS 2 FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.LOERCH,C.L.KIELKOPF REVDAT 6 27-DEC-23 4OZ1 1 REMARK LINK REVDAT 5 25-DEC-19 4OZ1 1 REMARK REVDAT 4 20-SEP-17 4OZ1 1 SOURCE KEYWDS JRNL REMARK REVDAT 4 2 1 CRYST1 REVDAT 3 14-JAN-15 4OZ1 1 DBREF REVDAT 2 01-OCT-14 4OZ1 1 JRNL REVDAT 1 14-MAY-14 4OZ1 0 JRNL AUTH S.LOERCH,A.MAUCUER,V.MANCEAU,M.R.GREEN,C.L.KIELKOPF JRNL TITL CANCER-RELEVANT SPLICING FACTOR CAPER ALPHA ENGAGES THE JRNL TITL 2 ESSENTIAL SPLICING FACTOR SF3B155 IN A SPECIFIC TERNARY JRNL TITL 3 COMPLEX. JRNL REF J.BIOL.CHEM. V. 289 17325 2014 JRNL REFN ESSN 1083-351X JRNL PMID 24795046 JRNL DOI 10.1074/JBC.M114.558825 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 37595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9959 - 5.2140 1.00 1319 147 0.1684 0.1765 REMARK 3 2 5.2140 - 4.1408 1.00 1314 163 0.1078 0.1265 REMARK 3 3 4.1408 - 3.6181 1.00 1323 140 0.1109 0.1469 REMARK 3 4 3.6181 - 3.2876 1.00 1308 143 0.1158 0.1508 REMARK 3 5 3.2876 - 3.0521 1.00 1337 146 0.1234 0.1489 REMARK 3 6 3.0521 - 2.8722 1.00 1316 132 0.1334 0.1790 REMARK 3 7 2.8722 - 2.7285 1.00 1304 161 0.1344 0.1629 REMARK 3 8 2.7285 - 2.6097 1.00 1326 133 0.1340 0.2363 REMARK 3 9 2.6097 - 2.5093 0.99 1322 139 0.1302 0.1769 REMARK 3 10 2.5093 - 2.4227 0.99 1330 138 0.1365 0.1936 REMARK 3 11 2.4227 - 2.3470 0.99 1268 158 0.1307 0.1928 REMARK 3 12 2.3470 - 2.2799 0.99 1307 140 0.1366 0.1463 REMARK 3 13 2.2799 - 2.2199 0.99 1313 146 0.1315 0.1836 REMARK 3 14 2.2199 - 2.1658 0.98 1281 158 0.1432 0.1772 REMARK 3 15 2.1658 - 2.1165 0.99 1305 136 0.1378 0.1700 REMARK 3 16 2.1165 - 2.0715 0.98 1291 143 0.1510 0.1871 REMARK 3 17 2.0715 - 2.0301 0.97 1248 146 0.1447 0.1768 REMARK 3 18 2.0301 - 1.9918 0.96 1305 135 0.1567 0.2133 REMARK 3 19 1.9918 - 1.9562 0.96 1232 138 0.1660 0.1997 REMARK 3 20 1.9562 - 1.9230 0.94 1251 140 0.1882 0.2496 REMARK 3 21 1.9230 - 1.8920 0.93 1252 139 0.1870 0.2098 REMARK 3 22 1.8920 - 1.8629 0.91 1174 131 0.1970 0.2461 REMARK 3 23 1.8629 - 1.8355 0.90 1210 138 0.1927 0.2447 REMARK 3 24 1.8355 - 1.8097 0.86 1109 129 0.2173 0.2595 REMARK 3 25 1.8097 - 1.7852 0.83 1110 116 0.2101 0.2492 REMARK 3 26 1.7852 - 1.7620 0.80 1041 123 0.2349 0.2488 REMARK 3 27 1.7620 - 1.7400 0.70 930 111 0.2405 0.2619 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1856 REMARK 3 ANGLE : 1.299 2545 REMARK 3 CHIRALITY : 0.060 285 REMARK 3 PLANARITY : 0.009 335 REMARK 3 DIHEDRAL : 14.156 656 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8429 -55.4622 100.5807 REMARK 3 T TENSOR REMARK 3 T11: 0.1028 T22: 0.0566 REMARK 3 T33: 0.0897 T12: -0.0075 REMARK 3 T13: 0.0172 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.1086 L22: 2.6381 REMARK 3 L33: 2.5952 L12: -1.6094 REMARK 3 L13: 1.3159 L23: -1.4623 REMARK 3 S TENSOR REMARK 3 S11: 0.1031 S12: 0.1764 S13: -0.0538 REMARK 3 S21: -0.1614 S22: -0.1547 S23: 0.0924 REMARK 3 S31: 0.3010 S32: 0.1395 S33: 0.0313 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 450 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2132 -50.0555 106.2485 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.0554 REMARK 3 T33: 0.0836 T12: -0.0019 REMARK 3 T13: -0.0066 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.6041 L22: 7.1154 REMARK 3 L33: 4.0886 L12: 0.6505 REMARK 3 L13: -0.5556 L23: -5.3938 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.0175 S13: 0.0557 REMARK 3 S21: -0.0001 S22: 0.0209 S23: 0.0583 REMARK 3 S31: -0.0546 S32: -0.1020 S33: -0.1207 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 451 THROUGH 485 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3046 -54.0977 107.9351 REMARK 3 T TENSOR REMARK 3 T11: 0.0298 T22: 0.0317 REMARK 3 T33: 0.0611 T12: 0.0060 REMARK 3 T13: -0.0005 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.0813 L22: 1.8931 REMARK 3 L33: 4.8634 L12: 0.4187 REMARK 3 L13: -0.6413 L23: -1.5073 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: 0.0474 S13: 0.0304 REMARK 3 S21: -0.0396 S22: 0.0198 S23: -0.0563 REMARK 3 S31: -0.0692 S32: 0.0663 S33: -0.0362 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 486 THROUGH 501 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9528 -62.0912 101.4117 REMARK 3 T TENSOR REMARK 3 T11: 0.1397 T22: 0.0477 REMARK 3 T33: 0.1044 T12: -0.0007 REMARK 3 T13: 0.0191 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 7.4072 L22: 1.5980 REMARK 3 L33: 8.1003 L12: 2.5038 REMARK 3 L13: 7.1818 L23: 2.3233 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: 0.1466 S13: -0.0935 REMARK 3 S21: -0.1199 S22: 0.1154 S23: 0.0501 REMARK 3 S31: -0.0410 S32: 0.0596 S33: -0.0803 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 502 THROUGH 508 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2856 -51.4556 110.3019 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.1034 REMARK 3 T33: 0.1602 T12: -0.0390 REMARK 3 T13: -0.0291 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 4.0557 L22: 4.5872 REMARK 3 L33: 6.5446 L12: -2.7303 REMARK 3 L13: 2.3827 L23: -0.3217 REMARK 3 S TENSOR REMARK 3 S11: 0.0829 S12: -0.4180 S13: 0.0986 REMARK 3 S21: 0.2271 S22: 0.0129 S23: -0.5129 REMARK 3 S31: -0.3887 S32: 0.3363 S33: -0.0147 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 509 THROUGH 513 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5866 -45.5580 112.0465 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1296 REMARK 3 T33: 0.1385 T12: -0.0263 REMARK 3 T13: -0.0325 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 8.4466 L22: 9.7751 REMARK 3 L33: 6.0987 L12: 2.9851 REMARK 3 L13: -4.6001 L23: 3.4403 REMARK 3 S TENSOR REMARK 3 S11: -0.0843 S12: -0.4998 S13: 0.1422 REMARK 3 S21: 0.3395 S22: 0.0916 S23: -0.3979 REMARK 3 S31: -0.3946 S32: 0.7620 S33: 0.0088 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 514 THROUGH 522 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3827 -45.0699 118.5196 REMARK 3 T TENSOR REMARK 3 T11: 0.1732 T22: 0.0877 REMARK 3 T33: 0.1051 T12: 0.0016 REMARK 3 T13: 0.0078 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 4.6446 L22: 3.6670 REMARK 3 L33: 8.7723 L12: 3.0544 REMARK 3 L13: 2.2739 L23: 0.2762 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: -0.5115 S13: 0.2816 REMARK 3 S21: 0.0346 S22: 0.1148 S23: 0.0749 REMARK 3 S31: -0.3064 S32: -0.2712 S33: -0.1397 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 414 THROUGH 427 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8680 -49.2984 95.4755 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.0825 REMARK 3 T33: 0.0549 T12: 0.0053 REMARK 3 T13: 0.0070 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 2.7865 L22: 5.5217 REMARK 3 L33: 5.9414 L12: -0.1314 REMARK 3 L13: 1.0005 L23: -2.8325 REMARK 3 S TENSOR REMARK 3 S11: -0.0826 S12: -0.2105 S13: 0.0448 REMARK 3 S21: 0.1071 S22: 0.1829 S23: 0.2301 REMARK 3 S31: -0.1074 S32: -0.2540 S33: 0.0004 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 428 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7371 -64.4729 100.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.1154 REMARK 3 T33: 0.1501 T12: 0.0064 REMARK 3 T13: -0.0341 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 7.8052 L22: 3.6286 REMARK 3 L33: 7.9777 L12: -4.1758 REMARK 3 L13: -4.4104 L23: 5.1236 REMARK 3 S TENSOR REMARK 3 S11: -0.2811 S12: -0.4488 S13: -0.1385 REMARK 3 S21: 0.3004 S22: 0.4081 S23: -0.1801 REMARK 3 S31: 0.3614 S32: 0.1500 S33: -0.0330 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 436 THROUGH 450 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4368 -60.0155 88.6463 REMARK 3 T TENSOR REMARK 3 T11: 0.1206 T22: 0.0946 REMARK 3 T33: 0.0594 T12: 0.0256 REMARK 3 T13: 0.0090 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 7.4250 L22: 5.5343 REMARK 3 L33: 7.0949 L12: -6.1844 REMARK 3 L13: 6.7669 L23: -5.0252 REMARK 3 S TENSOR REMARK 3 S11: 0.2576 S12: 0.1257 S13: -0.2022 REMARK 3 S21: -0.1193 S22: -0.0595 S23: 0.1046 REMARK 3 S31: 0.3805 S32: 0.2202 S33: -0.1412 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 451 THROUGH 485 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6302 -50.4000 90.8666 REMARK 3 T TENSOR REMARK 3 T11: 0.0685 T22: 0.0597 REMARK 3 T33: 0.0566 T12: 0.0153 REMARK 3 T13: -0.0026 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.9408 L22: 1.8525 REMARK 3 L33: 3.0100 L12: 0.0460 REMARK 3 L13: 1.1515 L23: -0.7184 REMARK 3 S TENSOR REMARK 3 S11: -0.0361 S12: -0.1191 S13: 0.0397 REMARK 3 S21: 0.1688 S22: 0.0059 S23: -0.1474 REMARK 3 S31: 0.0170 S32: 0.1876 S33: 0.0113 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 486 THROUGH 508 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1868 -49.1172 95.4114 REMARK 3 T TENSOR REMARK 3 T11: 0.0712 T22: 0.0891 REMARK 3 T33: 0.0407 T12: 0.0228 REMARK 3 T13: -0.0054 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 2.7724 L22: 6.9046 REMARK 3 L33: 2.2884 L12: 3.1654 REMARK 3 L13: -1.7492 L23: -2.6924 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: -0.0129 S13: 0.0971 REMARK 3 S21: 0.1362 S22: 0.1632 S23: 0.2880 REMARK 3 S31: 0.0179 S32: -0.1152 S33: -0.0748 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 509 THROUGH 523 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7703 -50.2896 81.5014 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.1659 REMARK 3 T33: 0.0867 T12: 0.0094 REMARK 3 T13: 0.0034 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.7218 L22: 3.8253 REMARK 3 L33: 4.3994 L12: 0.8955 REMARK 3 L13: 1.0904 L23: 3.7753 REMARK 3 S TENSOR REMARK 3 S11: -0.0673 S12: 0.2635 S13: -0.0380 REMARK 3 S21: -0.2097 S22: 0.2203 S23: -0.1825 REMARK 3 S31: -0.1290 S32: 0.5237 S33: -0.0706 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 335 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0394 -65.3377 96.7429 REMARK 3 T TENSOR REMARK 3 T11: 0.3061 T22: 0.2577 REMARK 3 T33: 0.2285 T12: 0.0354 REMARK 3 T13: 0.0454 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 3.2138 L22: 4.8626 REMARK 3 L33: 5.1058 L12: -2.8630 REMARK 3 L13: 3.1778 L23: -3.5758 REMARK 3 S TENSOR REMARK 3 S11: -0.1176 S12: 0.1703 S13: -0.7399 REMARK 3 S21: 0.4499 S22: 0.0175 S23: 0.4164 REMARK 3 S31: 0.8736 S32: -0.1673 S33: 0.0067 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 2 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8990 -63.5930 116.5648 REMARK 3 T TENSOR REMARK 3 T11: 0.3279 T22: 0.2215 REMARK 3 T33: 0.6091 T12: 0.0825 REMARK 3 T13: 0.1337 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.8577 L22: 3.9972 REMARK 3 L33: 2.0000 L12: 0.5717 REMARK 3 L13: 1.7729 L23: 8.8543 REMARK 3 S TENSOR REMARK 3 S11: 0.2311 S12: -0.2238 S13: 0.5548 REMARK 3 S21: -0.3915 S22: 0.2630 S23: -0.7223 REMARK 3 S31: -0.7569 S32: -0.1548 S33: -0.5173 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000200263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37595 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 34.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SODIUM PHOSPHATE, 0.8 M REMARK 280 POTASSIUM PHOSPHATE, 0.1 M HEPES PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.32650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.57050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.57050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.32650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 410 REMARK 465 SER A 411 REMARK 465 ARG A 523 REMARK 465 ARG A 524 REMARK 465 GLY B 410 REMARK 465 SER B 411 REMARK 465 VAL B 412 REMARK 465 GLN B 413 REMARK 465 ARG B 524 REMARK 465 LYS C 333 REMARK 465 ARG C 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 412 CG1 CG2 REMARK 470 GLN A 413 CG CD OE1 NE2 REMARK 470 GLN A 429 CD OE1 NE2 REMARK 470 GLU A 446 CD OE1 OE2 REMARK 470 LYS A 461 CE NZ REMARK 470 GLN A 465 CD OE1 NE2 REMARK 470 LEU B 415 CG CD1 CD2 REMARK 470 ARG B 523 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 335 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OXT LYS A 603 O HOH A 701 2.06 REMARK 500 O HOH B 630 O HOH B 666 2.13 REMARK 500 OD2 ASP B 437 O HOH B 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 451 -101.82 -135.71 REMARK 500 HIS B 451 -95.04 -132.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 825 DISTANCE = 6.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 601 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 483 O REMARK 620 2 ALA A 484 O 76.1 REMARK 620 3 HIS A 486 O 90.1 89.4 REMARK 620 4 HOH A 758 O 86.8 163.0 90.1 REMARK 620 5 HOH A 768 O 69.6 81.1 159.1 93.6 REMARK 620 6 GLU B 432 OE1 59.7 96.5 34.4 74.0 128.1 REMARK 620 7 GLU B 432 OE2 58.1 93.7 34.7 76.4 127.0 2.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LYS A 603 DBREF 4OZ1 A 411 524 UNP Q14498 RBM39_HUMAN 417 530 DBREF 4OZ1 B 411 524 UNP Q14498 RBM39_HUMAN 417 530 DBREF 4OZ1 C 333 342 UNP O75533 SF3B1_HUMAN 333 342 SEQADV 4OZ1 GLY A 410 UNP Q14498 EXPRESSION TAG SEQADV 4OZ1 GLY B 410 UNP Q14498 EXPRESSION TAG SEQRES 1 A 115 GLY SER VAL GLN PRO LEU ALA THR GLN CYS PHE GLN LEU SEQRES 2 A 115 SER ASN MET PHE ASN PRO GLN THR GLU GLU GLU VAL GLY SEQRES 3 A 115 TRP ASP THR GLU ILE LYS ASP ASP VAL ILE GLU GLU CYS SEQRES 4 A 115 ASN LYS HIS GLY GLY VAL ILE HIS ILE TYR VAL ASP LYS SEQRES 5 A 115 ASN SER ALA GLN GLY ASN VAL TYR VAL LYS CYS PRO SER SEQRES 6 A 115 ILE ALA ALA ALA ILE ALA ALA VAL ASN ALA LEU HIS GLY SEQRES 7 A 115 ARG TRP PHE ALA GLY LYS MET ILE THR ALA ALA TYR VAL SEQRES 8 A 115 PRO LEU PRO THR TYR HIS ASN LEU PHE PRO ASP SER MET SEQRES 9 A 115 THR ALA THR GLN LEU LEU VAL PRO SER ARG ARG SEQRES 1 B 115 GLY SER VAL GLN PRO LEU ALA THR GLN CYS PHE GLN LEU SEQRES 2 B 115 SER ASN MET PHE ASN PRO GLN THR GLU GLU GLU VAL GLY SEQRES 3 B 115 TRP ASP THR GLU ILE LYS ASP ASP VAL ILE GLU GLU CYS SEQRES 4 B 115 ASN LYS HIS GLY GLY VAL ILE HIS ILE TYR VAL ASP LYS SEQRES 5 B 115 ASN SER ALA GLN GLY ASN VAL TYR VAL LYS CYS PRO SER SEQRES 6 B 115 ILE ALA ALA ALA ILE ALA ALA VAL ASN ALA LEU HIS GLY SEQRES 7 B 115 ARG TRP PHE ALA GLY LYS MET ILE THR ALA ALA TYR VAL SEQRES 8 B 115 PRO LEU PRO THR TYR HIS ASN LEU PHE PRO ASP SER MET SEQRES 9 B 115 THR ALA THR GLN LEU LEU VAL PRO SER ARG ARG SEQRES 1 C 10 LYS ARG LYS SER ARG TRP ASP GLU THR PRO HET K A 601 1 HET CL A 602 1 HET LYS A 603 22 HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM LYS LYSINE FORMUL 4 K K 1+ FORMUL 5 CL CL 1- FORMUL 6 LYS C6 H15 N2 O2 1+ FORMUL 7 HOH *302(H2 O) HELIX 1 AA1 GLY A 435 ASN A 449 1 15 HELIX 2 AA2 SER A 474 HIS A 486 1 13 HELIX 3 AA3 PRO A 501 PHE A 509 1 9 HELIX 4 AA4 PRO A 510 THR A 514 5 5 HELIX 5 AA5 ASN B 427 GLU B 433 5 7 HELIX 6 AA6 GLY B 435 ASN B 449 1 15 HELIX 7 AA7 SER B 474 HIS B 486 1 13 HELIX 8 AA8 PRO B 501 PHE B 509 1 9 HELIX 9 AA9 PRO B 510 THR B 514 5 5 SHEET 1 AA1 4 HIS A 456 VAL A 459 0 SHEET 2 AA1 4 VAL A 468 LYS A 471 -1 O TYR A 469 N TYR A 458 SHEET 3 AA1 4 CYS A 419 SER A 423 -1 N LEU A 422 O VAL A 468 SHEET 4 AA1 4 THR A 496 VAL A 500 -1 O ALA A 498 N GLN A 421 SHEET 1 AA2 2 TRP A 489 PHE A 490 0 SHEET 2 AA2 2 LYS A 493 MET A 494 -1 O LYS A 493 N PHE A 490 SHEET 1 AA3 4 HIS B 456 VAL B 459 0 SHEET 2 AA3 4 VAL B 468 LYS B 471 -1 O TYR B 469 N TYR B 458 SHEET 3 AA3 4 CYS B 419 SER B 423 -1 N LEU B 422 O VAL B 468 SHEET 4 AA3 4 THR B 496 VAL B 500 -1 O ALA B 498 N GLN B 421 SHEET 1 AA4 2 TRP B 489 PHE B 490 0 SHEET 2 AA4 2 LYS B 493 MET B 494 -1 O LYS B 493 N PHE B 490 LINK O ASN A 483 K K A 601 1555 1555 2.78 LINK O ALA A 484 K K A 601 1555 1555 3.16 LINK O HIS A 486 K K A 601 1555 1555 2.64 LINK K K A 601 O HOH A 758 1555 3547 2.94 LINK K K A 601 O HOH A 768 1555 1555 2.85 LINK K K A 601 OE1 GLU B 432 1655 1555 3.32 LINK K K A 601 OE2 GLU B 432 1655 1555 2.69 SITE 1 AC1 6 ASN A 483 ALA A 484 HIS A 486 HOH A 758 SITE 2 AC1 6 HOH A 768 GLU B 432 SITE 1 AC2 3 THR A 504 ASN B 424 MET B 494 SITE 1 AC3 9 ASP A 437 HIS A 451 ALA A 480 HOH A 701 SITE 2 AC3 9 HOH A 706 HOH A 712 HOH A 722 HOH A 752 SITE 3 AC3 9 HOH A 754 CRYST1 44.653 52.410 85.141 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022395 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011745 0.00000