HEADER PROTEIN TRANSPORT 27-FEB-14 4P1N TITLE CRYSTAL STRUCTURE OF ATG1-ATG13 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATG1 TMIT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ATG13 MIM; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES MARXIANUS; SOURCE 3 ORGANISM_TAXID: 4911; SOURCE 4 GENE: ATG1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: KLUYVEROMYCES MARXIANUS; SOURCE 12 ORGANISM_TAXID: 4911; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PACYC184 KEYWDS COMPLEX, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.FUJIOKA,N.N.NODA REVDAT 7 27-DEC-23 4P1N 1 REMARK REVDAT 6 08-JAN-20 4P1N 1 SOURCE KEYWDS REMARK CRYST1 REVDAT 6 2 1 ATOM REVDAT 5 24-DEC-14 4P1N 1 DBREF REVDAT 4 01-OCT-14 4P1N 1 JRNL REVDAT 3 21-MAY-14 4P1N 1 JRNL REVDAT 2 14-MAY-14 4P1N 1 REMARK REVDAT 1 07-MAY-14 4P1N 0 JRNL AUTH Y.FUJIOKA,S.W.SUZUKI,H.YAMAMOTO,C.KONDO-KAKUTA,Y.KIMURA, JRNL AUTH 2 H.HIRANO,R.AKADA,F.INAGAKI,Y.OHSUMI,N.N.NODA JRNL TITL STRUCTURAL BASIS OF STARVATION-INDUCED ASSEMBLY OF THE JRNL TITL 2 AUTOPHAGY INITIATION COMPLEX. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 513 2014 JRNL REFN ESSN 1545-9985 JRNL PMID 24793651 JRNL DOI 10.1038/NSMB.2822 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3140 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2013 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 234 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3874 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.259 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3928 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3742 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5298 ; 1.368 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8622 ; 0.801 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 485 ; 5.357 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;36.663 ;25.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;20.362 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;24.546 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 629 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4300 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 813 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1976 ; 2.128 ; 3.509 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1975 ; 2.128 ; 3.507 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2449 ; 3.323 ; 5.226 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2450 ; 3.323 ; 5.228 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1952 ; 2.744 ; 3.734 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1952 ; 2.743 ; 3.734 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2850 ; 4.241 ; 5.493 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4526 ; 6.289 ;27.170 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4520 ; 6.279 ;27.148 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 568 A 828 5 REMARK 3 1 B 568 B 828 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1080 ; 0.640 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1612 ; 0.840 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1080 ; 7.550 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1612 ; 6.210 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 446 C 496 5 REMARK 3 1 D 446 D 496 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 C (A): 256 ; 0.490 ; 0.500 REMARK 3 LOOSE POSITIONAL 2 C (A): 378 ; 0.810 ; 5.000 REMARK 3 MEDIUM THERMAL 2 C (A**2): 256 ; 7.590 ; 2.000 REMARK 3 LOOSE THERMAL 2 C (A**2): 378 ; 7.180 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 567 A 828 REMARK 3 ORIGIN FOR THE GROUP (A): 50.3374 35.9049 67.0054 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.2129 REMARK 3 T33: 0.1695 T12: -0.0503 REMARK 3 T13: -0.0731 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 1.7067 L22: 3.5522 REMARK 3 L33: 3.6453 L12: 1.6865 REMARK 3 L13: 0.9123 L23: 1.6257 REMARK 3 S TENSOR REMARK 3 S11: 0.2227 S12: -0.2741 S13: -0.0222 REMARK 3 S21: 0.6630 S22: -0.2814 S23: -0.1610 REMARK 3 S31: 0.1715 S32: 0.1819 S33: 0.0588 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 568 B 836 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1750 27.8487 41.8268 REMARK 3 T TENSOR REMARK 3 T11: 0.0914 T22: 0.0967 REMARK 3 T33: 0.1158 T12: -0.0117 REMARK 3 T13: 0.0057 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 3.1729 L22: 3.1597 REMARK 3 L33: 1.8514 L12: -0.7946 REMARK 3 L13: 0.0204 L23: 0.6682 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: 0.0697 S13: 0.0053 REMARK 3 S21: -0.2702 S22: -0.2877 S23: 0.2580 REMARK 3 S31: 0.0941 S32: -0.2448 S33: 0.2691 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 446 C 500 REMARK 3 ORIGIN FOR THE GROUP (A): 52.0920 34.4875 62.3123 REMARK 3 T TENSOR REMARK 3 T11: 0.0658 T22: 0.3158 REMARK 3 T33: 0.2911 T12: -0.0284 REMARK 3 T13: -0.0195 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 1.6309 L22: 3.9444 REMARK 3 L33: 5.1418 L12: 0.8062 REMARK 3 L13: 0.6117 L23: 1.0850 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: -0.0597 S13: 0.0907 REMARK 3 S21: 0.1456 S22: 0.0609 S23: -0.3423 REMARK 3 S31: -0.4681 S32: 0.5835 S33: 0.0249 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 444 D 496 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5960 29.0652 42.3249 REMARK 3 T TENSOR REMARK 3 T11: 0.0864 T22: 0.1754 REMARK 3 T33: 0.1938 T12: 0.0327 REMARK 3 T13: -0.0149 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 4.9165 L22: 3.7214 REMARK 3 L33: 3.4954 L12: -0.9007 REMARK 3 L13: 0.8795 L23: 0.0906 REMARK 3 S TENSOR REMARK 3 S11: 0.0621 S12: 0.0365 S13: 0.1004 REMARK 3 S21: -0.4701 S22: -0.1581 S23: 0.4786 REMARK 3 S31: -0.1318 S32: -0.6525 S33: 0.0960 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4P1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0, 0.9791, 0.9794, 0.964 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31856 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M ACETATE BUFFER, PH 4.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.31100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 562 REMARK 465 PRO A 563 REMARK 465 HIS A 564 REMARK 465 MET A 565 REMARK 465 ILE A 566 REMARK 465 PRO A 598 REMARK 465 SER A 599 REMARK 465 PRO A 600 REMARK 465 PRO A 601 REMARK 465 SER A 602 REMARK 465 SER A 603 REMARK 465 THR A 604 REMARK 465 ASP A 605 REMARK 465 TYR A 606 REMARK 465 TYR A 607 REMARK 465 SER A 608 REMARK 465 GLN A 609 REMARK 465 SER A 610 REMARK 465 ASP A 611 REMARK 465 LYS A 612 REMARK 465 ARG A 613 REMARK 465 LEU A 614 REMARK 465 SER A 615 REMARK 465 ASN A 616 REMARK 465 GLY A 617 REMARK 465 SER A 618 REMARK 465 CYS A 619 REMARK 465 ALA A 620 REMARK 465 ILE A 621 REMARK 465 ASP A 622 REMARK 465 ASP A 623 REMARK 465 ASP A 624 REMARK 465 ASP A 625 REMARK 465 ASP A 626 REMARK 465 LEU A 627 REMARK 465 ASP A 628 REMARK 465 SER A 629 REMARK 465 GLY A 630 REMARK 465 ASN A 631 REMARK 465 PRO A 632 REMARK 465 SER A 633 REMARK 465 SER A 634 REMARK 465 ASN A 635 REMARK 465 GLN A 636 REMARK 465 THR A 637 REMARK 465 LEU A 638 REMARK 465 THR A 639 REMARK 465 PRO A 640 REMARK 465 GLY A 641 REMARK 465 ALA A 642 REMARK 465 ASN A 643 REMARK 465 LYS A 644 REMARK 465 VAL A 645 REMARK 465 SER A 646 REMARK 465 ALA A 647 REMARK 465 ALA A 648 REMARK 465 ASN A 649 REMARK 465 VAL A 650 REMARK 465 ASP A 651 REMARK 465 GLU A 740 REMARK 465 GLY A 768 REMARK 465 SER A 794 REMARK 465 ASN A 795 REMARK 465 GLU A 796 REMARK 465 VAL A 797 REMARK 465 TYR A 798 REMARK 465 ASP A 799 REMARK 465 ASP A 800 REMARK 465 GLY A 801 REMARK 465 TYR A 802 REMARK 465 SER A 803 REMARK 465 SER A 804 REMARK 465 ASN A 805 REMARK 465 ILE A 806 REMARK 465 THR A 807 REMARK 465 SER A 808 REMARK 465 LEU A 809 REMARK 465 LYS A 829 REMARK 465 ALA A 830 REMARK 465 LEU A 831 REMARK 465 LYS A 832 REMARK 465 SER A 833 REMARK 465 LYS A 834 REMARK 465 MET A 835 REMARK 465 SER A 836 REMARK 465 GLY B 562 REMARK 465 PRO B 563 REMARK 465 HIS B 564 REMARK 465 MET B 565 REMARK 465 ILE B 566 REMARK 465 SER B 567 REMARK 465 PRO B 598 REMARK 465 SER B 599 REMARK 465 PRO B 600 REMARK 465 PRO B 601 REMARK 465 SER B 602 REMARK 465 SER B 603 REMARK 465 THR B 604 REMARK 465 ASP B 605 REMARK 465 TYR B 606 REMARK 465 TYR B 607 REMARK 465 SER B 608 REMARK 465 GLN B 609 REMARK 465 SER B 610 REMARK 465 ASP B 611 REMARK 465 LYS B 612 REMARK 465 ARG B 613 REMARK 465 LEU B 614 REMARK 465 SER B 615 REMARK 465 ASN B 616 REMARK 465 GLY B 617 REMARK 465 SER B 618 REMARK 465 CYS B 619 REMARK 465 ALA B 620 REMARK 465 ILE B 621 REMARK 465 ASP B 622 REMARK 465 ASP B 623 REMARK 465 ASP B 624 REMARK 465 ASP B 625 REMARK 465 ASP B 626 REMARK 465 LEU B 627 REMARK 465 ASP B 628 REMARK 465 SER B 629 REMARK 465 GLY B 630 REMARK 465 ASN B 631 REMARK 465 PRO B 632 REMARK 465 SER B 633 REMARK 465 SER B 634 REMARK 465 ASN B 635 REMARK 465 GLN B 636 REMARK 465 THR B 637 REMARK 465 LEU B 638 REMARK 465 THR B 639 REMARK 465 PRO B 640 REMARK 465 GLY B 641 REMARK 465 ALA B 642 REMARK 465 ASN B 643 REMARK 465 LYS B 644 REMARK 465 VAL B 645 REMARK 465 SER B 646 REMARK 465 ALA B 647 REMARK 465 ALA B 648 REMARK 465 ASN B 649 REMARK 465 VAL B 650 REMARK 465 ASP B 651 REMARK 465 ASN B 652 REMARK 465 LEU B 653 REMARK 465 GLU B 692 REMARK 465 SER B 693 REMARK 465 LYS B 694 REMARK 465 ASN B 695 REMARK 465 PRO B 734 REMARK 465 GLN B 735 REMARK 465 GLU C 440 REMARK 465 THR C 441 REMARK 465 PRO C 442 REMARK 465 PRO C 443 REMARK 465 GLU C 444 REMARK 465 ASP C 445 REMARK 465 PRO C 463 REMARK 465 SER C 464 REMARK 465 THR C 465 REMARK 465 ILE C 466 REMARK 465 LEU C 467 REMARK 465 PRO C 468 REMARK 465 GLN C 469 REMARK 465 GLN C 470 REMARK 465 GLU D 440 REMARK 465 THR D 441 REMARK 465 PRO D 442 REMARK 465 PRO D 443 REMARK 465 MET D 497 REMARK 465 SER D 498 REMARK 465 ILE D 499 REMARK 465 ASP D 500 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 568 CG OD1 OD2 REMARK 470 ASN A 652 CG OD1 ND2 REMARK 470 LEU A 653 CG CD1 CD2 REMARK 470 LYS A 694 CG CD CE NZ REMARK 470 LEU A 723 CG CD1 CD2 REMARK 470 ASP A 739 CG OD1 OD2 REMARK 470 ASP A 755 CG OD1 OD2 REMARK 470 ARG A 758 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 769 CG OD1 ND2 REMARK 470 TYR A 770 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 774 CG CD OE1 OE2 REMARK 470 LEU A 775 CG CD1 CD2 REMARK 470 GLU A 790 CG CD OE1 OE2 REMARK 470 LEU A 792 CG CD1 CD2 REMARK 470 ASP A 810 CG OD1 OD2 REMARK 470 GLU A 811 CG CD OE1 OE2 REMARK 470 LYS A 814 CG CD CE NZ REMARK 470 LYS A 819 CG CD CE NZ REMARK 470 VAL A 821 CG1 CG2 REMARK 470 ILE A 824 CG1 CG2 CD1 REMARK 470 ASN A 826 CG OD1 ND2 REMARK 470 LEU A 828 CG CD1 CD2 REMARK 470 ASP B 568 CG OD1 OD2 REMARK 470 SER B 569 OG REMARK 470 ASN B 570 CG OD1 ND2 REMARK 470 ILE B 654 CG1 CG2 CD1 REMARK 470 LYS B 686 CG CD CE NZ REMARK 470 ARG B 722 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 732 CG CD OE1 OE2 REMARK 470 ASP B 733 CG OD1 OD2 REMARK 470 VAL B 736 CG1 CG2 REMARK 470 ASP B 739 CG OD1 OD2 REMARK 470 ARG B 762 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 790 CG CD OE1 OE2 REMARK 470 LYS C 451 CG CD CE NZ REMARK 470 LEU C 453 CG CD1 CD2 REMARK 470 LYS C 457 CG CD CE NZ REMARK 470 LYS C 462 CG CD CE NZ REMARK 470 ASP C 471 CG OD1 OD2 REMARK 470 GLU D 444 CG CD OE1 OE2 REMARK 470 LYS D 451 CG CD CE NZ REMARK 470 LYS D 457 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 661 OE2 GLU A 665 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 708 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 708 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 GLU B 796 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 733 109.77 -170.56 REMARK 500 VAL A 736 63.72 -115.86 REMARK 500 GLU B 690 -71.60 -80.04 REMARK 500 TYR B 798 79.85 -108.11 REMARK 500 MET D 461 176.83 73.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 733 PRO A 734 -149.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P1W RELATED DB: PDB DBREF 4P1N A 562 836 PDB 4P1N 4P1N 562 836 DBREF 4P1N B 562 836 PDB 4P1N 4P1N 562 836 DBREF 4P1N C 440 500 PDB 4P1N 4P1N 440 500 DBREF 4P1N D 440 500 PDB 4P1N 4P1N 440 500 SEQRES 1 A 275 GLY PRO HIS MET ILE SER ASP SER ASN ILE THR PRO PHE SEQRES 2 A 275 VAL GLU SER LEU SER ALA LYS ALA PHE VAL MET TYR SER SEQRES 3 A 275 PHE ALA GLU MET LYS PHE SER GLN ILE LEU PRO SER PRO SEQRES 4 A 275 PRO SER SER THR ASP TYR TYR SER GLN SER ASP LYS ARG SEQRES 5 A 275 LEU SER ASN GLY SER CYS ALA ILE ASP ASP ASP ASP ASP SEQRES 6 A 275 LEU ASP SER GLY ASN PRO SER SER ASN GLN THR LEU THR SEQRES 7 A 275 PRO GLY ALA ASN LYS VAL SER ALA ALA ASN VAL ASP ASN SEQRES 8 A 275 LEU ILE PRO ALA PRO GLU LEU LYS LYS LEU CYS MET GLU SEQRES 9 A 275 SER LEU LEU LEU TYR LEU LYS SER LEU THR ILE LEU ALA SEQRES 10 A 275 SER SER MET LYS LEU THR SER LYS TRP TRP TYR GLU ASN SEQRES 11 A 275 GLU SER LYS ASN CYS THR LEU LYS LEU ASN ILE LEU VAL SEQRES 12 A 275 GLN TRP ILE ARG ASP ARG PHE ASN GLU CYS LEU ASP LYS SEQRES 13 A 275 ALA GLU PHE LEU ARG LEU LYS LEU HIS THR LEU ASN GLN SEQRES 14 A 275 SER GLU ASP PRO GLN VAL LEU ASP ASP GLU PRO THR ILE SEQRES 15 A 275 PHE VAL GLU LYS LEU ILE TYR ASP ARG ALA LEU ASP ILE SEQRES 16 A 275 SER ARG ASN ALA ALA ARG LEU GLU MET GLU GLY GLY ASN SEQRES 17 A 275 TYR ASN THR CYS GLU LEU ALA TYR ALA THR SER LEU TRP SEQRES 18 A 275 MET LEU GLU ILE LEU LEU ASP GLU HIS LEU SER SER ASN SEQRES 19 A 275 GLU VAL TYR ASP ASP GLY TYR SER SER ASN ILE THR SER SEQRES 20 A 275 LEU ASP GLU SER ASP LYS GLU MET ILE ARG LYS TYR VAL SEQRES 21 A 275 SER SER ILE ALA ASN ARG LEU LYS ALA LEU LYS SER LYS SEQRES 22 A 275 MET SER SEQRES 1 B 275 GLY PRO HIS MET ILE SER ASP SER ASN ILE THR PRO PHE SEQRES 2 B 275 VAL GLU SER LEU SER ALA LYS ALA PHE VAL MET TYR SER SEQRES 3 B 275 PHE ALA GLU MET LYS PHE SER GLN ILE LEU PRO SER PRO SEQRES 4 B 275 PRO SER SER THR ASP TYR TYR SER GLN SER ASP LYS ARG SEQRES 5 B 275 LEU SER ASN GLY SER CYS ALA ILE ASP ASP ASP ASP ASP SEQRES 6 B 275 LEU ASP SER GLY ASN PRO SER SER ASN GLN THR LEU THR SEQRES 7 B 275 PRO GLY ALA ASN LYS VAL SER ALA ALA ASN VAL ASP ASN SEQRES 8 B 275 LEU ILE PRO ALA PRO GLU LEU LYS LYS LEU CYS MET GLU SEQRES 9 B 275 SER LEU LEU LEU TYR LEU LYS SER LEU THR ILE LEU ALA SEQRES 10 B 275 SER SER MET LYS LEU THR SER LYS TRP TRP TYR GLU ASN SEQRES 11 B 275 GLU SER LYS ASN CYS THR LEU LYS LEU ASN ILE LEU VAL SEQRES 12 B 275 GLN TRP ILE ARG ASP ARG PHE ASN GLU CYS LEU ASP LYS SEQRES 13 B 275 ALA GLU PHE LEU ARG LEU LYS LEU HIS THR LEU ASN GLN SEQRES 14 B 275 SER GLU ASP PRO GLN VAL LEU ASP ASP GLU PRO THR ILE SEQRES 15 B 275 PHE VAL GLU LYS LEU ILE TYR ASP ARG ALA LEU ASP ILE SEQRES 16 B 275 SER ARG ASN ALA ALA ARG LEU GLU MET GLU GLY GLY ASN SEQRES 17 B 275 TYR ASN THR CYS GLU LEU ALA TYR ALA THR SER LEU TRP SEQRES 18 B 275 MET LEU GLU ILE LEU LEU ASP GLU HIS LEU SER SER ASN SEQRES 19 B 275 GLU VAL TYR ASP ASP GLY TYR SER SER ASN ILE THR SER SEQRES 20 B 275 LEU ASP GLU SER ASP LYS GLU MET ILE ARG LYS TYR VAL SEQRES 21 B 275 SER SER ILE ALA ASN ARG LEU LYS ALA LEU LYS SER LYS SEQRES 22 B 275 MET SER SEQRES 1 C 61 GLU THR PRO PRO GLU ASP LEU LEU GLU PHE VAL LYS LEU SEQRES 2 C 61 LEU GLU ASP LYS LYS GLU LEU ASN MET LYS PRO SER THR SEQRES 3 C 61 ILE LEU PRO GLN GLN ASP ILE SER SER SER LEU ILE LYS SEQRES 4 C 61 PHE GLN SER MET LYS PRO ASN ASN ASP THR LEU SER ASP SEQRES 5 C 61 ASN LEU SER MET SER MET SER ILE ASP SEQRES 1 D 61 GLU THR PRO PRO GLU ASP LEU LEU GLU PHE VAL LYS LEU SEQRES 2 D 61 LEU GLU ASP LYS LYS GLU LEU ASN MET LYS PRO SER THR SEQRES 3 D 61 ILE LEU PRO GLN GLN ASP ILE SER SER SER LEU ILE LYS SEQRES 4 D 61 PHE GLN SER MET LYS PRO ASN ASN ASP THR LEU SER ASP SEQRES 5 D 61 ASN LEU SER MET SER MET SER ILE ASP FORMUL 5 HOH *26(H2 O) HELIX 1 AA1 ILE A 571 LEU A 597 1 27 HELIX 2 AA2 PRO A 655 ASN A 691 1 37 HELIX 3 AA3 THR A 697 GLN A 730 1 34 HELIX 4 AA4 PHE A 744 GLY A 767 1 24 HELIX 5 AA5 TYR A 770 ASP A 789 1 20 HELIX 6 AA6 GLU A 811 LEU A 828 1 18 HELIX 7 AA7 ASN B 570 GLN B 595 1 26 HELIX 8 AA8 PRO B 655 ASN B 691 1 37 HELIX 9 AA9 THR B 697 GLU B 732 1 36 HELIX 10 AB1 PHE B 744 GLU B 766 1 23 HELIX 11 AB2 ASN B 769 ASP B 789 1 21 HELIX 12 AB3 ASP B 810 MET B 835 1 26 HELIX 13 AB4 LEU C 447 ASP C 455 1 9 HELIX 14 AB5 ILE C 472 MET C 497 1 26 HELIX 15 AB6 ASP D 445 ASP D 455 1 11 HELIX 16 AB7 PRO D 463 LEU D 467 5 5 HELIX 17 AB8 ASP D 471 SER D 496 1 26 SHEET 1 AA1 2 ASN B 795 ASP B 799 0 SHEET 2 AA1 2 ASN B 805 ILE B 806 -1 O ILE B 806 N ASN B 795 CRYST1 51.995 96.622 63.330 90.00 93.15 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019233 0.000000 0.001059 0.00000 SCALE2 0.000000 0.010350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015814 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.993936 -0.101644 0.041953 80.93446 1 MTRIX2 2 -0.109893 0.931679 -0.346262 26.36886 1 MTRIX3 2 -0.003891 -0.348772 -0.937199 117.06797 1 MTRIX1 3 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 3 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 3 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 4 -0.991427 -0.122170 0.046330 80.65544 1 MTRIX2 4 -0.130659 0.927691 -0.349739 27.24683 1 MTRIX3 4 -0.000253 -0.352794 -0.935701 116.86250 1