HEADER TRANSPORT PROTEIN 03-MAR-14 4P2A TITLE STRUCTURE OF MOUSE VPS26A BOUND TO RAT SNX27 PDZ DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 26A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H58 PROTEIN, H BETA 58, VESICLE PROTEIN SORTING 26A, MVPS26, COMPND 5 VPS26A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SORTING NEXIN-27; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: MAP-RESPONSIVE GENE PROTEIN, METHAMPHETAMINE-RESPONSIVE COMPND 11 TRANSCRIPT 1 PROTEIN, PDZ-PROTEIN MRT1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: VPS26A, VPS26; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: SNX27, MRT1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RETROMER, SORTING NEXIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.CLAIRFEUILLE,M.GALLON,C.MAS,R.GHAI,R.TEASDALE,P.CULLEN,B.COLLINS REVDAT 3 20-DEC-23 4P2A 1 REMARK REVDAT 2 17-SEP-14 4P2A 1 JRNL REVDAT 1 03-SEP-14 4P2A 0 JRNL AUTH M.GALLON,T.CLAIRFEUILLE,F.STEINBERG,C.MAS,R.GHAI, JRNL AUTH 2 R.B.SESSIONS,R.D.TEASDALE,B.M.COLLINS,P.J.CULLEN JRNL TITL A UNIQUE PDZ DOMAIN AND ARRESTIN-LIKE FOLD INTERACTION JRNL TITL 2 REVEALS MECHANISTIC DETAILS OF ENDOCYTIC RECYCLING BY JRNL TITL 3 SNX27-RETROMER. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E3604 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 25136126 JRNL DOI 10.1073/PNAS.1410552111 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.9176 - 6.5044 1.00 1306 148 0.2264 0.2698 REMARK 3 2 6.5044 - 5.1638 1.00 1267 140 0.2216 0.2317 REMARK 3 3 5.1638 - 4.5114 1.00 1243 147 0.1595 0.1811 REMARK 3 4 4.5114 - 4.0990 1.00 1256 139 0.1605 0.2317 REMARK 3 5 4.0990 - 3.8053 1.00 1247 135 0.1834 0.2072 REMARK 3 6 3.8053 - 3.5810 1.00 1255 140 0.1900 0.2650 REMARK 3 7 3.5810 - 3.4017 1.00 1251 131 0.2180 0.2644 REMARK 3 8 3.4017 - 3.2536 1.00 1239 139 0.2420 0.2759 REMARK 3 9 3.2536 - 3.1284 1.00 1255 148 0.2674 0.3276 REMARK 3 10 3.1284 - 3.0204 1.00 1226 137 0.2714 0.3155 REMARK 3 11 3.0204 - 2.9260 1.00 1256 132 0.2894 0.3521 REMARK 3 12 2.9260 - 2.8423 1.00 1220 140 0.2877 0.3534 REMARK 3 13 2.8423 - 2.7675 1.00 1239 137 0.3183 0.3814 REMARK 3 14 2.7675 - 2.7000 1.00 1224 136 0.3349 0.4115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3124 REMARK 3 ANGLE : 1.357 4209 REMARK 3 CHIRALITY : 0.051 472 REMARK 3 PLANARITY : 0.007 542 REMARK 3 DIHEDRAL : 20.395 1189 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9800 27.7075 21.7334 REMARK 3 T TENSOR REMARK 3 T11: 0.6066 T22: 0.7506 REMARK 3 T33: 0.8629 T12: 0.0325 REMARK 3 T13: 0.2464 T23: 0.2727 REMARK 3 L TENSOR REMARK 3 L11: 7.8853 L22: 3.2402 REMARK 3 L33: 3.0168 L12: 0.3556 REMARK 3 L13: 2.4019 L23: 0.3663 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: -1.2674 S13: -1.3755 REMARK 3 S21: 0.4444 S22: -0.0548 S23: 0.5897 REMARK 3 S31: 0.3522 S32: -0.6216 S33: -0.0122 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0505 19.8515 34.7094 REMARK 3 T TENSOR REMARK 3 T11: 0.5462 T22: 0.5292 REMARK 3 T33: 0.8924 T12: 0.0067 REMARK 3 T13: -0.0019 T23: 0.2335 REMARK 3 L TENSOR REMARK 3 L11: 4.6018 L22: 4.7351 REMARK 3 L33: 8.1803 L12: -3.3719 REMARK 3 L13: 4.5496 L23: -3.0863 REMARK 3 S TENSOR REMARK 3 S11: 0.2477 S12: -0.5257 S13: -0.4010 REMARK 3 S21: 0.1483 S22: 0.2926 S23: -0.2337 REMARK 3 S31: 0.5723 S32: -0.0910 S33: -0.5114 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5512 56.7944 8.7004 REMARK 3 T TENSOR REMARK 3 T11: 1.0257 T22: 0.5697 REMARK 3 T33: 0.6808 T12: -0.0810 REMARK 3 T13: 0.0050 T23: 0.1022 REMARK 3 L TENSOR REMARK 3 L11: 2.1280 L22: 2.1396 REMARK 3 L33: 2.2178 L12: -2.4135 REMARK 3 L13: -3.5054 L23: 0.5960 REMARK 3 S TENSOR REMARK 3 S11: -0.3241 S12: -0.5233 S13: 0.7397 REMARK 3 S21: 0.7950 S22: 0.4038 S23: 0.1997 REMARK 3 S31: -0.7722 S32: -0.2395 S33: -0.0328 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0736 42.7973 17.3728 REMARK 3 T TENSOR REMARK 3 T11: 0.5469 T22: 0.4319 REMARK 3 T33: 0.5081 T12: 0.0488 REMARK 3 T13: 0.1588 T23: 0.1842 REMARK 3 L TENSOR REMARK 3 L11: 6.0749 L22: 9.0653 REMARK 3 L33: 9.0045 L12: -0.1583 REMARK 3 L13: 2.7404 L23: -1.4942 REMARK 3 S TENSOR REMARK 3 S11: 0.1637 S12: -0.5966 S13: -0.1316 REMARK 3 S21: 0.8940 S22: 0.2452 S23: 0.6097 REMARK 3 S31: 0.1886 S32: -0.4070 S33: -0.2967 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0225 51.7866 10.3545 REMARK 3 T TENSOR REMARK 3 T11: 0.4984 T22: 0.3734 REMARK 3 T33: 0.5221 T12: 0.0041 REMARK 3 T13: 0.0568 T23: 0.1409 REMARK 3 L TENSOR REMARK 3 L11: 5.6182 L22: 9.1067 REMARK 3 L33: 8.7072 L12: -0.3312 REMARK 3 L13: 2.8414 L23: -1.4773 REMARK 3 S TENSOR REMARK 3 S11: -0.1705 S12: 0.2532 S13: 0.5728 REMARK 3 S21: 0.2959 S22: 0.0023 S23: -0.3162 REMARK 3 S31: -0.6890 S32: 0.4714 S33: 0.2080 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19434 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 68.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.96400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRIES 3DQO AND 2FAU. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M NACL, 0.1 M NA CITRATE PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -Y,-X,-Z REMARK 290 5555 -X+Y,Y,-Z REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MUTATIONAL ANALYSIS INDICATES THE BIOLOGICAL ASSEMBLY IS REMARK 300 REPRESENTED BY THE CONTENTS OF THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 MET A 8 REMARK 465 LEU A 140 REMARK 465 VAL A 241 REMARK 465 LYS A 242 REMARK 465 GLY A 243 REMARK 465 GLU A 244 REMARK 465 LYS A 301 REMARK 465 LEU A 302 REMARK 465 ARG A 303 REMARK 465 LYS A 304 REMARK 465 GLN A 305 REMARK 465 ARG A 306 REMARK 465 THR A 307 REMARK 465 ASN A 308 REMARK 465 PHE A 309 REMARK 465 HIS A 310 REMARK 465 GLN A 311 REMARK 465 ARG A 312 REMARK 465 PHE A 313 REMARK 465 GLU A 314 REMARK 465 SER A 315 REMARK 465 PRO A 316 REMARK 465 ASP A 317 REMARK 465 SER A 318 REMARK 465 GLN A 319 REMARK 465 ALA A 320 REMARK 465 SER A 321 REMARK 465 ALA A 322 REMARK 465 GLU A 323 REMARK 465 GLN A 324 REMARK 465 PRO A 325 REMARK 465 GLU A 326 REMARK 465 MET A 327 REMARK 465 GLY B 35 REMARK 465 SER B 36 REMARK 465 HIS B 37 REMARK 465 GLY B 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 134 O HOH B 205 1.98 REMARK 500 OE2 GLU A 291 O HOH A 509 2.07 REMARK 500 OG SER A 47 O MET A 112 2.10 REMARK 500 OH TYR B 53 O GLU B 125 2.12 REMARK 500 N GLU B 125 O HOH B 209 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 117 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 78 -131.11 -78.56 REMARK 500 PRO A 98 124.31 -39.37 REMARK 500 GLU A 171 -133.22 171.63 REMARK 500 LYS A 266 -1.01 55.51 REMARK 500 GLU B 50 -116.57 53.77 REMARK 500 ARG B 122 24.75 -73.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 518 DISTANCE = 6.44 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FAU RELATED DB: PDB REMARK 900 2FAU IS THE APP STRUCTURE OF VPS26A (CHAIN A IN THE CURRENT REMARK 900 STRUCTURE) REMARK 900 RELATED ID: 3QDO RELATED DB: PDB REMARK 900 3QDO IS THE STRUCTURE OF SNX27 PDZ DOMAIN BOUND TO THE KIR3.3 PDZ REMARK 900 DOMAIN BINDING MOTIF. DBREF 4P2A A 9 327 UNP P40336 VP26A_MOUSE 9 327 DBREF 4P2A B 41 135 UNP Q8K4V4 SNX27_RAT 39 133 SEQADV 4P2A MET A 1 UNP P40336 INITIATING METHIONINE SEQADV 4P2A HIS A 2 UNP P40336 EXPRESSION TAG SEQADV 4P2A HIS A 3 UNP P40336 EXPRESSION TAG SEQADV 4P2A HIS A 4 UNP P40336 EXPRESSION TAG SEQADV 4P2A HIS A 5 UNP P40336 EXPRESSION TAG SEQADV 4P2A HIS A 6 UNP P40336 EXPRESSION TAG SEQADV 4P2A HIS A 7 UNP P40336 EXPRESSION TAG SEQADV 4P2A MET A 8 UNP P40336 EXPRESSION TAG SEQADV 4P2A GLY B 35 UNP Q8K4V4 EXPRESSION TAG SEQADV 4P2A SER B 36 UNP Q8K4V4 EXPRESSION TAG SEQADV 4P2A HIS B 37 UNP Q8K4V4 EXPRESSION TAG SEQADV 4P2A GLY B 38 UNP Q8K4V4 EXPRESSION TAG SEQADV 4P2A GLY B 39 UNP Q8K4V4 EXPRESSION TAG SEQADV 4P2A SER B 40 UNP Q8K4V4 EXPRESSION TAG SEQRES 1 A 327 MET HIS HIS HIS HIS HIS HIS MET GLY PRO ILE CYS GLU SEQRES 2 A 327 ILE ASP VAL ALA LEU ASN ASP GLY GLU THR ARG LYS MET SEQRES 3 A 327 ALA GLU MET LYS THR GLU ASP GLY LYS VAL GLU LYS HIS SEQRES 4 A 327 TYR LEU PHE TYR ASP GLY GLU SER VAL SER GLY LYS VAL SEQRES 5 A 327 ASN LEU ALA PHE LYS GLN PRO GLY LYS ARG LEU GLU HIS SEQRES 6 A 327 GLN GLY ILE ARG ILE GLU PHE VAL GLY GLN ILE GLU LEU SEQRES 7 A 327 PHE ASN ASP LYS SER ASN THR HIS GLU PHE VAL ASN LEU SEQRES 8 A 327 VAL LYS GLU LEU ALA LEU PRO GLY GLU LEU THR GLN SER SEQRES 9 A 327 ARG SER TYR ASP PHE GLU PHE MET GLN VAL GLU LYS PRO SEQRES 10 A 327 TYR GLU SER TYR ILE GLY ALA ASN VAL ARG LEU ARG TYR SEQRES 11 A 327 PHE LEU LYS VAL THR ILE VAL ARG ARG LEU THR ASP LEU SEQRES 12 A 327 VAL LYS GLU TYR ASP LEU ILE VAL HIS GLN LEU ALA THR SEQRES 13 A 327 TYR PRO ASP VAL ASN ASN SER ILE LYS MET GLU VAL GLY SEQRES 14 A 327 ILE GLU ASP CYS LEU HIS ILE GLU PHE GLU TYR ASN LYS SEQRES 15 A 327 SER LYS TYR HIS LEU LYS ASP VAL ILE VAL GLY LYS ILE SEQRES 16 A 327 TYR PHE LEU LEU VAL ARG ILE LYS ILE GLN HIS MET GLU SEQRES 17 A 327 LEU GLN LEU ILE LYS LYS GLU ILE THR GLY ILE GLY PRO SEQRES 18 A 327 SER THR THR THR GLU THR GLU THR ILE ALA LYS TYR GLU SEQRES 19 A 327 ILE MET ASP GLY ALA PRO VAL LYS GLY GLU SER ILE PRO SEQRES 20 A 327 ILE ARG LEU PHE LEU ALA GLY TYR ASP PRO THR PRO THR SEQRES 21 A 327 MET ARG ASP VAL ASN LYS LYS PHE SER VAL ARG TYR PHE SEQRES 22 A 327 LEU ASN LEU VAL LEU VAL ASP GLU GLU ASP ARG ARG TYR SEQRES 23 A 327 PHE LYS GLN GLN GLU ILE ILE LEU TRP ARG LYS ALA PRO SEQRES 24 A 327 GLU LYS LEU ARG LYS GLN ARG THR ASN PHE HIS GLN ARG SEQRES 25 A 327 PHE GLU SER PRO ASP SER GLN ALA SER ALA GLU GLN PRO SEQRES 26 A 327 GLU MET SEQRES 1 B 101 GLY SER HIS GLY GLY SER PRO ARG VAL VAL ARG ILE VAL SEQRES 2 B 101 LYS SER GLU SER GLY TYR GLY PHE ASN VAL ARG GLY GLN SEQRES 3 B 101 VAL SER GLU GLY GLY GLN LEU ARG SER ILE ASN GLY GLU SEQRES 4 B 101 LEU TYR ALA PRO LEU GLN HIS VAL SER ALA VAL LEU PRO SEQRES 5 B 101 GLY GLY ALA ALA ASP ARG ALA GLY VAL ARG LYS GLY ASP SEQRES 6 B 101 ARG ILE LEU GLU VAL ASN GLY VAL ASN VAL GLU GLY ALA SEQRES 7 B 101 THR HIS LYS GLN VAL VAL ASP LEU ILE ARG ALA GLY GLU SEQRES 8 B 101 LYS GLU LEU ILE LEU THR VAL LEU SER VAL HET HG A 401 1 HET HG A 402 1 HETNAM HG MERCURY (II) ION FORMUL 3 HG 2(HG 2+) FORMUL 5 HOH *35(H2 O) HELIX 1 AA1 ALA A 253 TYR A 255 5 3 HELIX 2 AA2 ASN A 265 LYS A 267 5 3 HELIX 3 AA3 GLY B 88 GLY B 94 1 7 HELIX 4 AA4 THR B 113 ARG B 122 1 10 SHEET 1 AA1 3 ILE A 11 LEU A 18 0 SHEET 2 AA1 3 VAL A 48 PHE A 56 -1 O ALA A 55 N CYS A 12 SHEET 3 AA1 3 ARG A 105 PHE A 111 -1 O TYR A 107 N VAL A 52 SHEET 1 AA2 6 MET A 26 LYS A 30 0 SHEET 2 AA2 6 VAL A 36 PHE A 42 -1 O HIS A 39 N ALA A 27 SHEET 3 AA2 6 LEU A 143 VAL A 151 1 O ILE A 150 N PHE A 42 SHEET 4 AA2 6 ARG A 127 VAL A 137 -1 N ILE A 136 O LEU A 143 SHEET 5 AA2 6 GLY A 67 GLU A 77 -1 N GLU A 77 O ARG A 127 SHEET 6 AA2 6 HIS A 86 ALA A 96 -1 O LEU A 95 N ILE A 68 SHEET 1 AA3 5 MET A 26 LYS A 30 0 SHEET 2 AA3 5 VAL A 36 PHE A 42 -1 O HIS A 39 N ALA A 27 SHEET 3 AA3 5 LEU A 143 VAL A 151 1 O ILE A 150 N PHE A 42 SHEET 4 AA3 5 ARG A 127 VAL A 137 -1 N ILE A 136 O LEU A 143 SHEET 5 AA3 5 TYR A 121 ILE A 122 -1 N TYR A 121 O LEU A 128 SHEET 1 AA4 2 LEU A 63 HIS A 65 0 SHEET 2 AA4 2 GLY A 99 LEU A 101 -1 O GLY A 99 N HIS A 65 SHEET 1 AA5 4 LYS A 184 HIS A 186 0 SHEET 2 AA5 4 ARG A 285 LYS A 297 1 O ILE A 293 N TYR A 185 SHEET 3 AA5 4 PHE A 268 ASP A 280 -1 N LEU A 274 O GLN A 290 SHEET 4 AA5 4 MET A 261 VAL A 264 -1 N MET A 261 O VAL A 270 SHEET 1 AA6 6 THR A 225 MET A 236 0 SHEET 2 AA6 6 ILE A 204 ILE A 216 -1 N LEU A 209 O TYR A 233 SHEET 3 AA6 6 PHE A 268 ASP A 280 -1 O VAL A 277 N GLU A 208 SHEET 4 AA6 6 ARG A 285 LYS A 297 -1 O GLN A 290 N LEU A 274 SHEET 5 AA6 6 LEU A 154 THR A 156 1 N ALA A 155 O ARG A 296 SHEET 6 AA6 6 GLY B 65 GLN B 66 -1 O GLY B 65 N THR A 156 SHEET 1 AA7 4 ILE A 164 GLY A 169 0 SHEET 2 AA7 4 LEU A 174 TYR A 180 -1 O PHE A 178 N MET A 166 SHEET 3 AA7 4 VAL A 190 VAL A 200 -1 O LEU A 199 N HIS A 175 SHEET 4 AA7 4 ILE A 246 PHE A 251 -1 O ILE A 248 N GLY A 193 SHEET 1 AA8 5 PRO B 41 VAL B 47 0 SHEET 2 AA8 5 GLU B 127 LEU B 133 -1 O LEU B 130 N VAL B 44 SHEET 3 AA8 5 ARG B 100 VAL B 104 -1 N ARG B 100 O LEU B 133 SHEET 4 AA8 5 GLN B 79 VAL B 84 -1 N GLN B 79 O ILE B 101 SHEET 5 AA8 5 PHE B 55 ARG B 58 -1 N ASN B 56 O ALA B 83 SHEET 1 AA9 4 PRO B 41 VAL B 47 0 SHEET 2 AA9 4 GLU B 127 LEU B 133 -1 O LEU B 130 N VAL B 44 SHEET 3 AA9 4 ARG B 100 VAL B 104 -1 N ARG B 100 O LEU B 133 SHEET 4 AA9 4 VAL B 107 ASN B 108 -1 O VAL B 107 N VAL B 104 SHEET 1 AB1 2 ARG B 68 ILE B 70 0 SHEET 2 AB1 2 GLU B 73 TYR B 75 -1 O GLU B 73 N ILE B 70 LINK SG CYS A 12 HG HG A 402 1555 1555 2.39 LINK SG CYS A 173 HG HG A 401 1555 1555 2.32 CISPEP 1 LYS A 82 SER A 83 0 -2.76 CISPEP 2 GLY A 238 ALA A 239 0 4.30 SITE 1 AC1 1 CYS A 173 SITE 1 AC2 1 CYS A 12 CRYST1 113.810 113.810 94.771 90.00 90.00 120.00 P 3 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008787 0.005073 0.000000 0.00000 SCALE2 0.000000 0.010146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010552 0.00000