HEADER LIGASE 27-FEB-14 4P2B TITLE CRYSTAL STRUCTURE OF THE APO FORM OF THE GLUTAMINYL-TRNA SYNTHETASE TITLE 2 CATALYTIC DOMAIN FROM TOXOPLASMA GONDII. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE AMINOACYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 332-886; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: DATABASE GENE SEQUENCE WAS OPTIMIZED FOR CODON USAGE COMPND 7 BEFORE SYNTHESIS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-28 KEYWDS AMINOACYL TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.VAN ROOYEN,H.BELRHALI,M.A.HAKIMI REVDAT 4 27-SEP-23 4P2B 1 REMARK REVDAT 3 04-OCT-17 4P2B 1 REMARK REVDAT 2 07-OCT-15 4P2B 1 REMARK REVDAT 1 18-MAR-15 4P2B 0 JRNL AUTH J.M.VAN ROOYEN,H.BELRHALI,M.A.HAKIMI JRNL TITL CRYSTAL STRUCTURE OF THE APO FORM OF THE GLUTAMINYL-TRNA JRNL TITL 2 SYNTHETASE CATALYTIC DOMAIN FROM TOXOPLASMA GONDII. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 36328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6660 - 6.5710 0.96 2785 137 0.2435 0.2476 REMARK 3 2 6.5710 - 5.2209 0.98 2705 146 0.2339 0.2638 REMARK 3 3 5.2209 - 4.5625 0.98 2651 152 0.1715 0.1882 REMARK 3 4 4.5625 - 4.1460 0.98 2664 156 0.1648 0.2016 REMARK 3 5 4.1460 - 3.8492 0.98 2665 138 0.1890 0.2503 REMARK 3 6 3.8492 - 3.6225 0.98 2629 132 0.2139 0.2716 REMARK 3 7 3.6225 - 3.4412 0.99 2633 161 0.2280 0.2637 REMARK 3 8 3.4412 - 3.2915 0.99 2629 131 0.2665 0.3140 REMARK 3 9 3.2915 - 3.1649 0.99 2654 129 0.2710 0.3243 REMARK 3 10 3.1649 - 3.0558 0.99 2623 136 0.2726 0.3285 REMARK 3 11 3.0558 - 2.9603 0.99 2641 134 0.2840 0.3730 REMARK 3 12 2.9603 - 2.8757 0.99 2645 133 0.3532 0.3702 REMARK 3 13 2.8757 - 2.8000 0.98 2580 139 0.4193 0.4587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3928 REMARK 3 ANGLE : 1.368 5347 REMARK 3 CHIRALITY : 0.095 598 REMARK 3 PLANARITY : 0.007 694 REMARK 3 DIHEDRAL : 16.926 1350 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 40:271 REMARK 3 ORIGIN FOR THE GROUP (A): 76.6802 73.7007 57.4247 REMARK 3 T TENSOR REMARK 3 T11: 0.6925 T22: 0.3442 REMARK 3 T33: 0.5045 T12: 0.0397 REMARK 3 T13: -0.0737 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.2817 L22: 2.5798 REMARK 3 L33: 1.7816 L12: -1.1464 REMARK 3 L13: -0.5418 L23: -0.8519 REMARK 3 S TENSOR REMARK 3 S11: -0.1952 S12: -0.0596 S13: 0.1710 REMARK 3 S21: 0.2121 S22: 0.0441 S23: -0.0208 REMARK 3 S31: -0.2633 S32: 0.0863 S33: 0.0459 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 272:359 REMARK 3 ORIGIN FOR THE GROUP (A): 99.4986 47.6327 50.8232 REMARK 3 T TENSOR REMARK 3 T11: 0.6767 T22: 0.2968 REMARK 3 T33: 0.5235 T12: 0.0290 REMARK 3 T13: 0.0380 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 2.7259 L22: 0.6525 REMARK 3 L33: 1.3692 L12: -0.9289 REMARK 3 L13: -1.0024 L23: 0.9081 REMARK 3 S TENSOR REMARK 3 S11: -0.2322 S12: -0.0019 S13: 0.1885 REMARK 3 S21: 0.2284 S22: 0.0490 S23: 0.0250 REMARK 3 S31: 0.2156 S32: 0.2380 S33: 0.1507 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 360 THROUGH 479 ) REMARK 3 ORIGIN FOR THE GROUP (A): 117.0994 24.9063 44.5062 REMARK 3 T TENSOR REMARK 3 T11: 0.8071 T22: 0.3461 REMARK 3 T33: 0.4431 T12: 0.0498 REMARK 3 T13: 0.1003 T23: -0.0623 REMARK 3 L TENSOR REMARK 3 L11: 1.6947 L22: 2.1491 REMARK 3 L33: 1.4907 L12: -0.9571 REMARK 3 L13: -1.3840 L23: 0.0069 REMARK 3 S TENSOR REMARK 3 S11: -0.1683 S12: -0.1070 S13: -0.2615 REMARK 3 S21: 0.5980 S22: -0.0005 S23: 0.2340 REMARK 3 S31: 0.0058 S32: -0.0060 S33: 0.1479 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 18:36 REMARK 3 ORIGIN FOR THE GROUP (A): 72.4347 48.8386 79.7033 REMARK 3 T TENSOR REMARK 3 T11: 0.6391 T22: 0.5065 REMARK 3 T33: 0.3405 T12: 0.1996 REMARK 3 T13: 0.2826 T23: 0.3391 REMARK 3 L TENSOR REMARK 3 L11: 1.1143 L22: 1.7174 REMARK 3 L33: 6.0348 L12: 1.3739 REMARK 3 L13: -0.6216 L23: -0.3862 REMARK 3 S TENSOR REMARK 3 S11: -0.2435 S12: -0.2271 S13: -0.2897 REMARK 3 S21: -0.0213 S22: 0.1230 S23: -0.1268 REMARK 3 S31: 0.5319 S32: 0.0497 S33: -0.0249 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : UNBUFFERED REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.62800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1QTQ REMARK 200 REMARK 200 REMARK: AMYGDALOIDAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL 40 G/L PROTEIN TO 1 UL 2M REMARK 280 AMMONIUM SULPHATE OVER 2M AMMONIUM SULPHATE RESERVOIR., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 153.02000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.51000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.51000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 153.02000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 157.69500 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 91.04525 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 153.02000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 37 REMARK 465 HIS A 38 REMARK 465 LYS A 39 REMARK 465 GLY A 148 REMARK 465 SER A 149 REMARK 465 ILE A 150 REMARK 465 SER A 151 REMARK 465 GLN A 152 REMARK 465 PRO A 153 REMARK 465 GLY A 154 REMARK 465 THR A 244 REMARK 465 LEU A 245 REMARK 465 GLU A 246 REMARK 465 PHE A 247 REMARK 465 ASP A 248 REMARK 465 ALA A 379 REMARK 465 ASN A 380 REMARK 465 HIS A 381 REMARK 465 PRO A 382 REMARK 465 GLU A 383 REMARK 465 ASP A 384 REMARK 465 GLU A 385 REMARK 465 SER A 386 REMARK 465 PHE A 387 REMARK 465 GLY A 388 REMARK 465 THR A 389 REMARK 465 CYS A 457 REMARK 465 SER A 458 REMARK 465 VAL A 459 REMARK 465 ALA A 460 REMARK 465 GLU A 496 REMARK 465 GLU A 497 REMARK 465 GLU A 498 REMARK 465 ASP A 499 REMARK 465 GLU A 500 REMARK 465 SER A 501 REMARK 465 ASN A 502 REMARK 465 PRO A 503 REMARK 465 ASN A 504 REMARK 465 ALA A 505 REMARK 465 SER A 506 REMARK 465 PRO A 555 REMARK 465 GLU A 556 REMARK 465 GLU A 557 REMARK 465 ALA A 558 REMARK 465 ASP A 559 REMARK 465 ASN A 560 REMARK 465 THR A 561 REMARK 465 LYS A 562 REMARK 465 THR A 563 REMARK 465 ARG A 564 REMARK 465 GLN A 576 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 21 CG SD CE REMARK 470 VAL A 22 CG1 CG2 REMARK 470 ASN A 23 CG OD1 ND2 REMARK 470 LEU A 25 CG CD1 CD2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 ASP A 32 OD1 OD2 REMARK 470 ARG A 34 CG CD NE CZ NH1 NH2 REMARK 470 THR A 35 OG1 CG2 REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 SER A 139 OG REMARK 470 LEU A 140 CG CD1 CD2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 ASP A 191 CG OD1 OD2 REMARK 470 THR A 193 OG1 CG2 REMARK 470 HIS A 194 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 195 OG REMARK 470 ASN A 196 CB CG OD1 ND2 REMARK 470 MET A 197 CG SD CE REMARK 470 ASN A 198 CB CG OD1 ND2 REMARK 470 ARG A 200 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 CYS A 243 SG REMARK 470 LEU A 249 CG CD1 CD2 REMARK 470 HIS A 250 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 251 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 252 CG1 CG2 CD1 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 268 CG CD OE1 NE2 REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 ASP A 324 CG OD1 OD2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 VAL A 326 CG1 CG2 REMARK 470 VAL A 328 CG1 CG2 REMARK 470 ARG A 330 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 331 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 THR A 375 OG1 CG2 REMARK 470 LYS A 397 CG CD CE NZ REMARK 470 ASP A 403 CG OD1 OD2 REMARK 470 GLN A 453 CG CD OE1 NE2 REMARK 470 THR A 454 OG1 CG2 REMARK 470 LYS A 455 CG CD CE NZ REMARK 470 ASN A 456 CG OD1 ND2 REMARK 470 PRO A 461 CG CD REMARK 470 ASP A 462 CG OD1 OD2 REMARK 470 ARG A 464 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 465 CG CD CE NZ REMARK 470 VAL A 466 CG1 CG2 REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 GLU A 475 CG CD OE1 OE2 REMARK 470 LYS A 476 CG CD CE NZ REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 ASN A 494 CG OD1 ND2 REMARK 470 TRP A 507 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 507 CZ3 CH2 REMARK 470 ARG A 508 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 509 CG CD OE1 OE2 REMARK 470 ASN A 510 CG OD1 ND2 REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 470 LYS A 517 CG CD CE NZ REMARK 470 LYS A 520 CG CD CE NZ REMARK 470 ARG A 543 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 554 CG CD1 CD2 REMARK 470 THR A 565 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 87 NH2 ARG A 90 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 67.22 60.15 REMARK 500 HIS A 20 -99.59 -172.46 REMARK 500 VAL A 22 -103.44 172.67 REMARK 500 ASN A 23 50.49 -95.17 REMARK 500 THR A 35 20.68 -74.73 REMARK 500 PRO A 46 60.08 -118.47 REMARK 500 ASP A 81 58.00 -100.88 REMARK 500 GLU A 87 55.32 -105.84 REMARK 500 LYS A 146 -8.44 -58.31 REMARK 500 GLU A 181 120.64 -38.22 REMARK 500 ILE A 190 -118.01 -105.92 REMARK 500 THR A 193 -75.97 -54.28 REMARK 500 HIS A 194 120.51 -36.39 REMARK 500 MET A 199 11.29 -143.79 REMARK 500 ALA A 329 122.92 178.54 REMARK 500 SER A 333 -167.06 -126.01 REMARK 500 LYS A 372 149.06 84.48 REMARK 500 GLU A 374 116.98 9.12 REMARK 500 ARG A 415 163.26 75.89 REMARK 500 LYS A 425 130.45 -37.72 REMARK 500 ALA A 427 -138.62 -147.92 REMARK 500 ASP A 434 138.07 69.39 REMARK 500 GLN A 453 82.70 130.34 REMARK 500 THR A 454 -106.36 -72.04 REMARK 500 ASP A 462 -23.95 66.12 REMARK 500 LYS A 465 -141.66 179.33 REMARK 500 VAL A 466 -91.23 146.87 REMARK 500 LYS A 467 -107.15 91.39 REMARK 500 ARG A 508 76.91 26.24 REMARK 500 GLU A 509 73.45 -59.39 REMARK 500 ASN A 510 55.52 -108.79 REMARK 500 SER A 530 -38.68 69.37 REMARK 500 PRO A 535 3.47 -56.99 REMARK 500 GLN A 536 32.43 -143.73 REMARK 500 VAL A 573 146.64 -174.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 20 MET A 21 -148.85 REMARK 500 LYS A 465 VAL A 466 149.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 DBREF 4P2B A 22 576 UNP D3XAP9 D3XAP9_TOXGO 332 886 SEQADV 4P2B MET A 1 UNP D3XAP9 INITIATING METHIONINE SEQADV 4P2B GLY A 2 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B SER A 3 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B SER A 4 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B HIS A 5 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B HIS A 6 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B HIS A 7 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B HIS A 8 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B HIS A 9 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B HIS A 10 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B SER A 11 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B SER A 12 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B GLY A 13 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B LEU A 14 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B VAL A 15 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B PRO A 16 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B ARG A 17 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B GLY A 18 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B SER A 19 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B HIS A 20 UNP D3XAP9 EXPRESSION TAG SEQADV 4P2B MET A 21 UNP D3XAP9 EXPRESSION TAG SEQRES 1 A 576 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 576 LEU VAL PRO ARG GLY SER HIS MET VAL ASN PHE LEU LYS SEQRES 3 A 576 GLN ILE VAL GLU GLU ASP LEU ARG THR GLY LYS HIS LYS SEQRES 4 A 576 THR VAL ILE THR ARG PHE PRO PRO GLU PRO ASN GLY PHE SEQRES 5 A 576 LEU HIS LEU GLY HIS ALA LYS SER VAL CYS LEU ASN PHE SEQRES 6 A 576 GLY LEU ALA LYS ALA PHE GLY GLY ARG CYS HIS LEU ARG SEQRES 7 A 576 PHE ASP ASP THR ASN PRO MET LYS GLU GLU THR ARG TYR SEQRES 8 A 576 ILE GLU SER ILE GLN ARG ASP VAL ARG TRP LEU GLY GLY SEQRES 9 A 576 ASP TRP GLY ASN HIS LEU TYR TYR ALA SER ASP TYR PHE SEQRES 10 A 576 GLN GLN LEU TYR ASP TRP ALA GLU LEU LEU ILE LYS LYS SEQRES 11 A 576 GLY LEU ALA PHE VAL ASP ASP ASP SER LEU GLU GLU ILE SEQRES 12 A 576 ARG ARG LYS ARG GLY SER ILE SER GLN PRO GLY GLU ASN SEQRES 13 A 576 SER PRO PHE ARG GLU ARG SER ILE GLU GLU ASN LEU ASP SEQRES 14 A 576 LEU PHE ARG ARG MET ARG ALA GLY GLU PHE GLU GLU GLY SEQRES 15 A 576 SER ARG VAL LEU ARG ALA LYS ILE ASP MET THR HIS SER SEQRES 16 A 576 ASN MET ASN MET ARG ASP PRO VAL LEU TYR ARG ILE LEU SEQRES 17 A 576 LYS LYS GLU HIS PRO ARG THR GLY ASN GLN TRP VAL ILE SEQRES 18 A 576 TYR PRO MET TYR ASP TYR ALA HIS GLY GLN SER ASP SER SEQRES 19 A 576 ILE GLU ASN ILE THR HIS SER ILE CYS THR LEU GLU PHE SEQRES 20 A 576 ASP LEU HIS ARG ILE LEU TYR ASP TRP PHE GLN GLU LYS SEQRES 21 A 576 LEU GLU ILE THR ARG THR ARG GLN ILE GLU PHE ALA ARG SEQRES 22 A 576 LEU ASN VAL THR TYR THR VAL MET SER LYS ARG LYS LEU SEQRES 23 A 576 LEU ALA LEU VAL THR GLU LYS TRP VAL ASP GLY TRP ASP SEQRES 24 A 576 ASP PRO ARG LEU PRO THR LEU SER GLY LEU ARG ARG ARG SEQRES 25 A 576 GLY VAL PRO PRO SER ALA LEU ARG ASP PHE CYS ASP LYS SEQRES 26 A 576 VAL GLY VAL ALA ARG ARG GLU SER THR ILE LYS VAL GLU SEQRES 27 A 576 VAL LEU GLU LYS CYS ILE ARG ASP ALA LEU HIS VAL VAL SEQRES 28 A 576 ALA HIS ARG ARG PHE ALA ILE GLN ASP PRO ILE ALA VAL SEQRES 29 A 576 THR ILE THR ASN TYR GLY ASP LYS VAL GLU THR ILE THR SEQRES 30 A 576 ALA ALA ASN HIS PRO GLU ASP GLU SER PHE GLY THR ARG SEQRES 31 A 576 GLU LEU HIS PHE SER LYS LYS LEU TYR ILE ASP ARG ASP SEQRES 32 A 576 ASP PHE MET GLU ASN PRO PRO ALA GLY TYR ARG ARG LEU SEQRES 33 A 576 ALA PRO GLY ALA GLU VAL ARG LEU LYS HIS ALA TYR TRP SEQRES 34 A 576 ILE LYS CYS VAL ASP VAL VAL LYS ASP ALA SER GLY LEU SEQRES 35 A 576 VAL THR GLU LEU LEU CYS THR TYR ASP PRO GLN THR LYS SEQRES 36 A 576 ASN CYS SER VAL ALA PRO ASP GLY ARG LYS VAL LYS GLY SEQRES 37 A 576 ALA ILE HIS TRP LEU SER GLU LYS ASP ALA VAL PRO ALA SEQRES 38 A 576 GLU ILE ARG ILE PHE GLY ARG LEU PHE THR LYS PRO ASN SEQRES 39 A 576 PRO GLU GLU GLU ASP GLU SER ASN PRO ASN ALA SER TRP SEQRES 40 A 576 ARG GLU ASN ILE ASN LYS GLU SER LEU LYS VAL TYR LYS SEQRES 41 A 576 GLY PHE VAL GLU ARG SER ALA ALA ASP SER ALA ALA PHE SEQRES 42 A 576 PRO PRO GLN SER SER LEU GLN PHE GLU ARG LEU GLY PHE SEQRES 43 A 576 PHE THR PRO ASP GLY SER THR LEU PRO GLU GLU ALA ASP SEQRES 44 A 576 ASN THR LYS THR ARG THR LEU PRO VAL PHE ASN LEU THR SEQRES 45 A 576 VAL ALA LEU GLN HET SO4 A 601 5 HET SO4 A 602 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) HELIX 1 AA1 PHE A 24 THR A 35 1 12 HELIX 2 AA2 HIS A 54 PHE A 71 1 18 HELIX 3 AA3 GLU A 87 GLY A 103 1 17 HELIX 4 AA4 TYR A 116 LYS A 130 1 15 HELIX 5 AA5 SER A 139 ARG A 147 1 9 HELIX 6 AA6 SER A 163 GLY A 177 1 15 HELIX 7 AA7 MET A 224 GLU A 236 1 13 HELIX 8 AA8 ARG A 251 LEU A 261 1 11 HELIX 9 AA9 SER A 282 GLU A 292 1 11 HELIX 10 AB1 THR A 305 GLY A 313 1 9 HELIX 11 AB2 PRO A 315 GLY A 327 1 13 HELIX 12 AB3 LYS A 336 ALA A 352 1 17 HELIX 13 AB4 ASP A 403 PHE A 405 5 3 HELIX 14 AB5 SER A 526 ASP A 529 5 4 SHEET 1 AA1 3 ILE A 42 PHE A 45 0 SHEET 2 AA1 3 ARG A 74 PHE A 79 1 O HIS A 76 N THR A 43 SHEET 3 AA1 3 LEU A 110 TYR A 112 1 O TYR A 111 N PHE A 79 SHEET 1 AA2 4 ALA A 133 ASP A 136 0 SHEET 2 AA2 4 VAL A 185 ALA A 188 -1 O ARG A 187 N PHE A 134 SHEET 3 AA2 4 VAL A 203 ILE A 207 -1 O LEU A 204 N LEU A 186 SHEET 4 AA2 4 ILE A 221 PRO A 223 -1 O TYR A 222 N ARG A 206 SHEET 1 AA3 2 HIS A 240 CYS A 243 0 SHEET 2 AA3 2 ARG A 267 GLU A 270 1 O ARG A 267 N SER A 241 SHEET 1 AA4 7 HIS A 353 ARG A 355 0 SHEET 2 AA4 7 LEU A 539 PHE A 541 1 O GLN A 540 N HIS A 353 SHEET 3 AA4 7 GLY A 545 PRO A 549 -1 O PHE A 547 N LEU A 539 SHEET 4 AA4 7 VAL A 568 VAL A 573 -1 O ASN A 570 N THR A 548 SHEET 5 AA4 7 ALA A 478 PHE A 486 1 N ARG A 484 O PHE A 569 SHEET 6 AA4 7 LEU A 516 GLU A 524 -1 O GLY A 521 N ALA A 481 SHEET 7 AA4 7 ALA A 357 ILE A 358 -1 N ILE A 358 O PHE A 522 SHEET 1 AA5 7 ALA A 469 ILE A 470 0 SHEET 2 AA5 7 GLU A 421 LEU A 424 1 N ARG A 423 O ILE A 470 SHEET 3 AA5 7 TRP A 429 LYS A 437 -1 O ILE A 430 N VAL A 422 SHEET 4 AA5 7 VAL A 443 THR A 449 -1 O THR A 444 N VAL A 436 SHEET 5 AA5 7 PRO A 361 ILE A 366 1 N THR A 365 O CYS A 448 SHEET 6 AA5 7 LYS A 397 ASP A 401 -1 O LEU A 398 N VAL A 364 SHEET 7 AA5 7 LEU A 473 SER A 474 -1 O LEU A 473 N TYR A 399 SHEET 1 AA6 2 THR A 375 ILE A 376 0 SHEET 2 AA6 2 LEU A 392 HIS A 393 -1 O LEU A 392 N ILE A 376 SSBOND 1 CYS A 62 CYS A 323 1555 1555 2.05 CISPEP 1 ASN A 196 MET A 197 0 -2.70 CISPEP 2 LEU A 261 GLU A 262 0 -25.34 CISPEP 3 GLY A 463 ARG A 464 0 14.23 SITE 1 AC1 3 LYS A 129 LEU A 168 ARG A 172 SITE 1 AC2 2 HIS A 353 ARG A 355 CRYST1 105.130 105.130 229.530 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009512 0.005492 0.000000 0.00000 SCALE2 0.000000 0.010984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004357 0.00000