HEADER OXIDOREDUCTASE 12-MAR-14 4P4N TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATE TITLE 2 DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE 5-DEHYDROGENASE AROE (5-DEHYDROSHIKIMATE COMPND 3 REDUCTASE); COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: SHIKIMATE 5-DEHYDROGENASE; COMPND 6 EC: 1.1.1.25; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: AROE, MT2629, RV2552C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30B KEYWDS MYCOBACTERIUM TUBERCULOSIS, SHIKIMATE DEHYDROGENASE, AROE, STRUCTURAL KEYWDS 2 GENOMICS, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.LALGONDAR,J.C.SACCHETTINI,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 4 27-SEP-23 4P4N 1 REMARK REVDAT 3 25-DEC-19 4P4N 1 REMARK REVDAT 2 20-SEP-17 4P4N 1 SOURCE JRNL REMARK REVDAT 1 18-MAR-15 4P4N 0 JRNL AUTH M.LALGONDAR,J.C.SACCHETTINI JRNL TITL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATE JRNL TITL 2 DEHYDROGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 49154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1811 - 5.0994 0.98 2801 136 0.1999 0.2071 REMARK 3 2 5.0994 - 4.0483 0.98 2631 153 0.1629 0.1826 REMARK 3 3 4.0483 - 3.5368 0.99 2599 142 0.1721 0.2196 REMARK 3 4 3.5368 - 3.2135 0.98 2578 134 0.1935 0.2322 REMARK 3 5 3.2135 - 2.9832 0.99 2602 138 0.2032 0.2349 REMARK 3 6 2.9832 - 2.8073 1.00 2620 157 0.2032 0.2402 REMARK 3 7 2.8073 - 2.6668 1.00 2603 125 0.1999 0.2385 REMARK 3 8 2.6668 - 2.5507 1.00 2587 133 0.1947 0.2800 REMARK 3 9 2.5507 - 2.4525 1.00 2583 134 0.1874 0.2076 REMARK 3 10 2.4525 - 2.3679 1.00 2596 141 0.1868 0.2569 REMARK 3 11 2.3679 - 2.2938 1.00 2576 134 0.1838 0.2167 REMARK 3 12 2.2938 - 2.2283 1.00 2567 149 0.1801 0.2417 REMARK 3 13 2.2283 - 2.1696 1.00 2542 157 0.1791 0.2614 REMARK 3 14 2.1696 - 2.1167 1.00 2575 139 0.1727 0.2489 REMARK 3 15 2.1167 - 2.0686 1.00 2592 125 0.1883 0.2254 REMARK 3 16 2.0686 - 2.0245 1.00 2539 133 0.1828 0.2432 REMARK 3 17 2.0245 - 1.9840 1.00 2585 135 0.1807 0.2685 REMARK 3 18 1.9840 - 1.9500 0.98 2484 129 0.1788 0.2715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5751 REMARK 3 ANGLE : 1.120 7869 REMARK 3 CHIRALITY : 0.071 930 REMARK 3 PLANARITY : 0.006 1025 REMARK 3 DIHEDRAL : 11.531 1957 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5242 157.0694 -2.2813 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.0812 REMARK 3 T33: 0.0911 T12: 0.0112 REMARK 3 T13: -0.0214 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.3920 L22: 2.1970 REMARK 3 L33: 0.9346 L12: -0.8811 REMARK 3 L13: -0.0301 L23: 0.4338 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: 0.0007 S13: 0.1703 REMARK 3 S21: -0.0041 S22: 0.0307 S23: -0.1288 REMARK 3 S31: -0.0444 S32: 0.0625 S33: 0.0427 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4800 143.4340 11.4241 REMARK 3 T TENSOR REMARK 3 T11: 0.1380 T22: 0.1029 REMARK 3 T33: 0.1669 T12: -0.0172 REMARK 3 T13: -0.0128 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.6072 L22: 0.2524 REMARK 3 L33: 2.6588 L12: -0.0125 REMARK 3 L13: 0.2911 L23: -0.4238 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: -0.1517 S13: -0.0356 REMARK 3 S21: -0.0390 S22: 0.0593 S23: 0.0664 REMARK 3 S31: 0.1828 S32: -0.2923 S33: -0.0696 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2510 110.7839 0.1667 REMARK 3 T TENSOR REMARK 3 T11: 0.1352 T22: 0.1919 REMARK 3 T33: 0.1872 T12: 0.0032 REMARK 3 T13: -0.0237 T23: 0.0499 REMARK 3 L TENSOR REMARK 3 L11: 2.0212 L22: 1.7724 REMARK 3 L33: 3.5177 L12: -1.0826 REMARK 3 L13: 1.2970 L23: -0.6116 REMARK 3 S TENSOR REMARK 3 S11: 0.2788 S12: -0.0868 S13: -0.4654 REMARK 3 S21: -0.0959 S22: 0.1069 S23: 0.1673 REMARK 3 S31: 0.2652 S32: -0.4330 S33: -0.1767 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9261 121.1762 11.3129 REMARK 3 T TENSOR REMARK 3 T11: 0.1367 T22: 0.1184 REMARK 3 T33: 0.1587 T12: 0.0469 REMARK 3 T13: 0.0005 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 0.6890 L22: 1.4679 REMARK 3 L33: 3.3615 L12: 0.3704 REMARK 3 L13: -0.2086 L23: 1.1865 REMARK 3 S TENSOR REMARK 3 S11: 0.0892 S12: -0.0738 S13: -0.0674 REMARK 3 S21: 0.0991 S22: 0.0587 S23: -0.1839 REMARK 3 S31: -0.1722 S32: 0.0530 S33: -0.0825 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 5 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.4747 157.5349 -1.1770 REMARK 3 T TENSOR REMARK 3 T11: 0.1173 T22: 0.1120 REMARK 3 T33: 0.0901 T12: 0.0042 REMARK 3 T13: -0.0050 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.6946 L22: 2.4371 REMARK 3 L33: 1.8102 L12: 0.6414 REMARK 3 L13: -0.4448 L23: 0.3774 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: 0.0062 S13: 0.1655 REMARK 3 S21: -0.1483 S22: 0.0369 S23: 0.0879 REMARK 3 S31: -0.0037 S32: 0.0899 S33: 0.0221 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 105 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.8949 144.2927 12.9643 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.1083 REMARK 3 T33: 0.1473 T12: -0.0293 REMARK 3 T13: 0.0011 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.3721 L22: 0.7876 REMARK 3 L33: 2.3475 L12: -0.1186 REMARK 3 L13: -0.1222 L23: -0.5970 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.0463 S13: -0.0585 REMARK 3 S21: -0.0032 S22: -0.0195 S23: 0.1099 REMARK 3 S31: 0.0342 S32: -0.1491 S33: 0.0416 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.17500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4P4G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 6.2, 1.65 M REMARK 280 (NH4)2SO4, 2.7 % 1,6-HEXANEDIOL, 0.1 M GUANIDINE HCL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 64.28400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.34800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.28400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.34800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 4 REMARK 465 ASP A 269 REMARK 465 LEU A 270 REMARK 465 ASP A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLY B 4 REMARK 465 ALA B 266 REMARK 465 ALA B 267 REMARK 465 LEU B 268 REMARK 465 ASP B 269 REMARK 465 LEU B 270 REMARK 465 ASP B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 465 HIS B 276 REMARK 465 HIS B 277 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLU C 3 REMARK 465 GLY C 4 REMARK 465 LEU C 268 REMARK 465 ASP C 269 REMARK 465 LEU C 270 REMARK 465 ASP C 271 REMARK 465 HIS C 272 REMARK 465 HIS C 273 REMARK 465 HIS C 274 REMARK 465 HIS C 275 REMARK 465 HIS C 276 REMARK 465 HIS C 277 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 74 O HOH B 401 2.05 REMARK 500 O GLY C 253 O HOH C 401 2.05 REMARK 500 O ARG A 79 O HOH A 401 2.09 REMARK 500 OE1 GLU A 58 O HOH A 484 2.11 REMARK 500 O LEU B 265 O HOH B 460 2.12 REMARK 500 O HOH C 477 O HOH C 485 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 403 O HOH C 419 2675 1.95 REMARK 500 O HOH C 402 O HOH C 407 2675 1.96 REMARK 500 O HOH A 406 O HOH B 401 3555 1.99 REMARK 500 O HOH A 401 O HOH C 427 4475 2.01 REMARK 500 OE2 GLU C 47 O HOH A 401 4575 2.10 REMARK 500 O HOH C 403 O HOH C 403 2675 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 15 -13.34 -144.10 REMARK 500 LEU A 33 57.33 -95.24 REMARK 500 ILE B 15 -13.40 -144.82 REMARK 500 LEU C 33 54.07 -92.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 532 DISTANCE = 6.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P4L RELATED DB: PDB REMARK 900 RELATED ID: 4P4G RELATED DB: PDB DBREF 4P4N A 1 269 UNP P95001 P95001_MYCTU 1 269 DBREF 4P4N B 1 269 UNP P95001 P95001_MYCTU 1 269 DBREF 4P4N C 1 269 UNP P95001 P95001_MYCTU 1 269 SEQADV 4P4N LEU A 270 UNP P95001 EXPRESSION TAG SEQADV 4P4N ASP A 271 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS A 272 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS A 273 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS A 274 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS A 275 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS A 276 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS A 277 UNP P95001 EXPRESSION TAG SEQADV 4P4N LEU B 270 UNP P95001 EXPRESSION TAG SEQADV 4P4N ASP B 271 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS B 272 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS B 273 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS B 274 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS B 275 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS B 276 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS B 277 UNP P95001 EXPRESSION TAG SEQADV 4P4N LEU C 270 UNP P95001 EXPRESSION TAG SEQADV 4P4N ASP C 271 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS C 272 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS C 273 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS C 274 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS C 275 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS C 276 UNP P95001 EXPRESSION TAG SEQADV 4P4N HIS C 277 UNP P95001 EXPRESSION TAG SEQRES 1 A 277 MET SER GLU GLY PRO LYS LYS ALA GLY VAL LEU GLY SER SEQRES 2 A 277 PRO ILE ALA HIS SER ARG SER PRO GLN LEU HIS LEU ALA SEQRES 3 A 277 ALA TYR ARG ALA LEU GLY LEU HIS ASP TRP THR TYR GLU SEQRES 4 A 277 ARG ILE GLU CYS GLY ALA ALA GLU LEU PRO VAL VAL VAL SEQRES 5 A 277 GLY GLY PHE GLY PRO GLU TRP VAL GLY VAL SER VAL THR SEQRES 6 A 277 MET PRO GLY LYS PHE ALA ALA LEU ARG PHE ALA ASP GLU SEQRES 7 A 277 ARG THR ALA ARG ALA ASP LEU VAL GLY SER ALA ASN THR SEQRES 8 A 277 LEU VAL ARG THR PRO HIS GLY TRP ARG ALA ASP ASN THR SEQRES 9 A 277 ASP ILE ASP GLY VAL ALA GLY ALA LEU GLY ALA ALA ALA SEQRES 10 A 277 GLY HIS ALA LEU VAL LEU GLY SER GLY GLY THR ALA PRO SEQRES 11 A 277 ALA ALA VAL VAL GLY LEU ALA GLU LEU GLY VAL THR ASP SEQRES 12 A 277 ILE THR VAL VAL ALA ARG ASN SER ASP LYS ALA ALA ARG SEQRES 13 A 277 LEU VAL ASP LEU GLY THR ARG VAL GLY VAL ALA THR ARG SEQRES 14 A 277 PHE CYS ALA PHE ASP SER GLY GLY LEU ALA ASP ALA VAL SEQRES 15 A 277 ALA ALA ALA GLU VAL LEU VAL SER THR ILE PRO ALA GLU SEQRES 16 A 277 VAL ALA ALA GLY TYR ALA GLY THR LEU ALA ALA ILE PRO SEQRES 17 A 277 VAL LEU LEU ASP ALA ILE TYR ASP PRO TRP PRO THR PRO SEQRES 18 A 277 LEU ALA ALA ALA VAL GLY SER ALA GLY GLY ARG VAL ILE SEQRES 19 A 277 SER GLY LEU GLN MET LEU LEU HIS GLN ALA PHE ALA GLN SEQRES 20 A 277 VAL GLU GLN PHE THR GLY LEU PRO ALA PRO ARG GLU ALA SEQRES 21 A 277 MET THR CYS ALA LEU ALA ALA LEU ASP LEU ASP HIS HIS SEQRES 22 A 277 HIS HIS HIS HIS SEQRES 1 B 277 MET SER GLU GLY PRO LYS LYS ALA GLY VAL LEU GLY SER SEQRES 2 B 277 PRO ILE ALA HIS SER ARG SER PRO GLN LEU HIS LEU ALA SEQRES 3 B 277 ALA TYR ARG ALA LEU GLY LEU HIS ASP TRP THR TYR GLU SEQRES 4 B 277 ARG ILE GLU CYS GLY ALA ALA GLU LEU PRO VAL VAL VAL SEQRES 5 B 277 GLY GLY PHE GLY PRO GLU TRP VAL GLY VAL SER VAL THR SEQRES 6 B 277 MET PRO GLY LYS PHE ALA ALA LEU ARG PHE ALA ASP GLU SEQRES 7 B 277 ARG THR ALA ARG ALA ASP LEU VAL GLY SER ALA ASN THR SEQRES 8 B 277 LEU VAL ARG THR PRO HIS GLY TRP ARG ALA ASP ASN THR SEQRES 9 B 277 ASP ILE ASP GLY VAL ALA GLY ALA LEU GLY ALA ALA ALA SEQRES 10 B 277 GLY HIS ALA LEU VAL LEU GLY SER GLY GLY THR ALA PRO SEQRES 11 B 277 ALA ALA VAL VAL GLY LEU ALA GLU LEU GLY VAL THR ASP SEQRES 12 B 277 ILE THR VAL VAL ALA ARG ASN SER ASP LYS ALA ALA ARG SEQRES 13 B 277 LEU VAL ASP LEU GLY THR ARG VAL GLY VAL ALA THR ARG SEQRES 14 B 277 PHE CYS ALA PHE ASP SER GLY GLY LEU ALA ASP ALA VAL SEQRES 15 B 277 ALA ALA ALA GLU VAL LEU VAL SER THR ILE PRO ALA GLU SEQRES 16 B 277 VAL ALA ALA GLY TYR ALA GLY THR LEU ALA ALA ILE PRO SEQRES 17 B 277 VAL LEU LEU ASP ALA ILE TYR ASP PRO TRP PRO THR PRO SEQRES 18 B 277 LEU ALA ALA ALA VAL GLY SER ALA GLY GLY ARG VAL ILE SEQRES 19 B 277 SER GLY LEU GLN MET LEU LEU HIS GLN ALA PHE ALA GLN SEQRES 20 B 277 VAL GLU GLN PHE THR GLY LEU PRO ALA PRO ARG GLU ALA SEQRES 21 B 277 MET THR CYS ALA LEU ALA ALA LEU ASP LEU ASP HIS HIS SEQRES 22 B 277 HIS HIS HIS HIS SEQRES 1 C 277 MET SER GLU GLY PRO LYS LYS ALA GLY VAL LEU GLY SER SEQRES 2 C 277 PRO ILE ALA HIS SER ARG SER PRO GLN LEU HIS LEU ALA SEQRES 3 C 277 ALA TYR ARG ALA LEU GLY LEU HIS ASP TRP THR TYR GLU SEQRES 4 C 277 ARG ILE GLU CYS GLY ALA ALA GLU LEU PRO VAL VAL VAL SEQRES 5 C 277 GLY GLY PHE GLY PRO GLU TRP VAL GLY VAL SER VAL THR SEQRES 6 C 277 MET PRO GLY LYS PHE ALA ALA LEU ARG PHE ALA ASP GLU SEQRES 7 C 277 ARG THR ALA ARG ALA ASP LEU VAL GLY SER ALA ASN THR SEQRES 8 C 277 LEU VAL ARG THR PRO HIS GLY TRP ARG ALA ASP ASN THR SEQRES 9 C 277 ASP ILE ASP GLY VAL ALA GLY ALA LEU GLY ALA ALA ALA SEQRES 10 C 277 GLY HIS ALA LEU VAL LEU GLY SER GLY GLY THR ALA PRO SEQRES 11 C 277 ALA ALA VAL VAL GLY LEU ALA GLU LEU GLY VAL THR ASP SEQRES 12 C 277 ILE THR VAL VAL ALA ARG ASN SER ASP LYS ALA ALA ARG SEQRES 13 C 277 LEU VAL ASP LEU GLY THR ARG VAL GLY VAL ALA THR ARG SEQRES 14 C 277 PHE CYS ALA PHE ASP SER GLY GLY LEU ALA ASP ALA VAL SEQRES 15 C 277 ALA ALA ALA GLU VAL LEU VAL SER THR ILE PRO ALA GLU SEQRES 16 C 277 VAL ALA ALA GLY TYR ALA GLY THR LEU ALA ALA ILE PRO SEQRES 17 C 277 VAL LEU LEU ASP ALA ILE TYR ASP PRO TRP PRO THR PRO SEQRES 18 C 277 LEU ALA ALA ALA VAL GLY SER ALA GLY GLY ARG VAL ILE SEQRES 19 C 277 SER GLY LEU GLN MET LEU LEU HIS GLN ALA PHE ALA GLN SEQRES 20 C 277 VAL GLU GLN PHE THR GLY LEU PRO ALA PRO ARG GLU ALA SEQRES 21 C 277 MET THR CYS ALA LEU ALA ALA LEU ASP LEU ASP HIS HIS SEQRES 22 C 277 HIS HIS HIS HIS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 B 301 5 HET SO4 C 301 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 HOH *346(H2 O) HELIX 1 AA1 ARG A 19 LEU A 31 1 13 HELIX 2 AA2 GLU A 47 GLY A 54 1 8 HELIX 3 AA3 GLY A 68 ALA A 76 1 9 HELIX 4 AA4 THR A 80 GLY A 87 1 8 HELIX 5 AA5 THR A 104 GLY A 114 1 11 HELIX 6 AA6 THR A 128 GLY A 140 1 13 HELIX 7 AA7 ASN A 150 VAL A 164 1 15 HELIX 8 AA8 GLY A 177 ALA A 185 1 9 HELIX 9 AA9 PRO A 193 ALA A 198 1 6 HELIX 10 AB1 TYR A 200 ALA A 205 1 6 HELIX 11 AB2 THR A 220 GLY A 230 1 11 HELIX 12 AB3 SER A 235 GLY A 253 1 19 HELIX 13 AB4 PRO A 257 LEU A 268 1 12 HELIX 14 AB5 ARG B 19 LEU B 31 1 13 HELIX 15 AB6 GLU B 47 GLY B 54 1 8 HELIX 16 AB7 GLY B 68 ALA B 76 1 9 HELIX 17 AB8 THR B 80 GLY B 87 1 8 HELIX 18 AB9 THR B 104 GLY B 114 1 11 HELIX 19 AC1 THR B 128 GLY B 140 1 13 HELIX 20 AC2 ASN B 150 VAL B 164 1 15 HELIX 21 AC3 GLY B 177 ALA B 185 1 9 HELIX 22 AC4 PRO B 193 ALA B 198 1 6 HELIX 23 AC5 TYR B 200 ALA B 205 1 6 HELIX 24 AC6 THR B 220 GLY B 230 1 11 HELIX 25 AC7 SER B 235 GLY B 253 1 19 HELIX 26 AC8 PRO B 257 LEU B 265 1 9 HELIX 27 AC9 ARG C 19 LEU C 31 1 13 HELIX 28 AD1 GLU C 47 PHE C 55 1 9 HELIX 29 AD2 GLY C 68 ALA C 76 1 9 HELIX 30 AD3 THR C 80 GLY C 87 1 8 HELIX 31 AD4 THR C 104 GLY C 114 1 11 HELIX 32 AD5 THR C 128 GLY C 140 1 13 HELIX 33 AD6 ASN C 150 VAL C 164 1 15 HELIX 34 AD7 GLY C 177 ALA C 185 1 9 HELIX 35 AD8 PRO C 193 ALA C 198 1 6 HELIX 36 AD9 TYR C 200 ALA C 205 1 6 HELIX 37 AE1 THR C 220 GLY C 230 1 11 HELIX 38 AE2 SER C 235 GLY C 253 1 19 HELIX 39 AE3 PRO C 257 ALA C 267 1 11 SHEET 1 AA1 6 THR A 37 GLU A 42 0 SHEET 2 AA1 6 LYS A 7 GLY A 12 1 N VAL A 10 O ILE A 41 SHEET 3 AA1 6 GLY A 61 VAL A 64 1 O SER A 63 N GLY A 9 SHEET 4 AA1 6 THR A 91 ARG A 94 -1 O LEU A 92 N VAL A 62 SHEET 5 AA1 6 TRP A 99 ASP A 102 -1 O ARG A 100 N VAL A 93 SHEET 6 AA1 6 GLU A 78 ARG A 79 1 N GLU A 78 O ALA A 101 SHEET 1 AA2 6 ALA A 167 CYS A 171 0 SHEET 2 AA2 6 VAL A 141 VAL A 147 1 N VAL A 146 O ARG A 169 SHEET 3 AA2 6 GLY A 118 LEU A 123 1 N VAL A 122 O VAL A 147 SHEET 4 AA2 6 VAL A 187 SER A 190 1 O VAL A 189 N LEU A 121 SHEET 5 AA2 6 VAL A 209 ASP A 212 1 O LEU A 211 N LEU A 188 SHEET 6 AA2 6 ARG A 232 ILE A 234 1 O ARG A 232 N LEU A 210 SHEET 1 AA3 6 THR B 37 GLU B 42 0 SHEET 2 AA3 6 LYS B 7 GLY B 12 1 N VAL B 10 O GLU B 39 SHEET 3 AA3 6 GLY B 61 VAL B 64 1 O SER B 63 N GLY B 9 SHEET 4 AA3 6 THR B 91 ARG B 94 -1 O LEU B 92 N VAL B 62 SHEET 5 AA3 6 TRP B 99 ASP B 102 -1 O ARG B 100 N VAL B 93 SHEET 6 AA3 6 GLU B 78 ARG B 79 1 N GLU B 78 O ALA B 101 SHEET 1 AA4 6 ALA B 167 ALA B 172 0 SHEET 2 AA4 6 ASP B 143 ALA B 148 1 N VAL B 146 O ARG B 169 SHEET 3 AA4 6 HIS B 119 LEU B 123 1 N VAL B 122 O VAL B 147 SHEET 4 AA4 6 VAL B 187 SER B 190 1 O VAL B 189 N LEU B 121 SHEET 5 AA4 6 VAL B 209 ASP B 212 1 O LEU B 211 N LEU B 188 SHEET 6 AA4 6 ARG B 232 ILE B 234 1 O ARG B 232 N LEU B 210 SHEET 1 AA5 6 THR C 37 GLU C 42 0 SHEET 2 AA5 6 LYS C 7 GLY C 12 1 N VAL C 10 O ILE C 41 SHEET 3 AA5 6 TRP C 59 VAL C 64 1 O SER C 63 N GLY C 9 SHEET 4 AA5 6 THR C 91 THR C 95 -1 O LEU C 92 N VAL C 62 SHEET 5 AA5 6 GLY C 98 ASP C 102 -1 O GLY C 98 N THR C 95 SHEET 6 AA5 6 GLU C 78 ARG C 79 1 N GLU C 78 O ALA C 101 SHEET 1 AA6 6 ALA C 167 CYS C 171 0 SHEET 2 AA6 6 VAL C 141 VAL C 147 1 N VAL C 146 O ARG C 169 SHEET 3 AA6 6 GLY C 118 LEU C 123 1 N VAL C 122 O VAL C 147 SHEET 4 AA6 6 VAL C 187 SER C 190 1 O VAL C 189 N LEU C 121 SHEET 5 AA6 6 VAL C 209 ASP C 212 1 O LEU C 211 N LEU C 188 SHEET 6 AA6 6 ARG C 232 ILE C 234 1 O ARG C 232 N LEU C 210 CISPEP 1 SER A 13 PRO A 14 0 0.05 CISPEP 2 MET A 66 PRO A 67 0 4.77 CISPEP 3 ASP A 216 PRO A 217 0 0.81 CISPEP 4 TRP A 218 PRO A 219 0 0.11 CISPEP 5 SER B 13 PRO B 14 0 3.95 CISPEP 6 MET B 66 PRO B 67 0 0.84 CISPEP 7 ASP B 216 PRO B 217 0 -0.66 CISPEP 8 TRP B 218 PRO B 219 0 2.04 CISPEP 9 SER C 13 PRO C 14 0 -0.20 CISPEP 10 MET C 66 PRO C 67 0 5.77 CISPEP 11 ASP C 216 PRO C 217 0 0.80 CISPEP 12 TRP C 218 PRO C 219 0 0.75 SITE 1 AC1 9 ALA A 45 ARG A 74 HOH A 454 LYS C 7 SITE 2 AC1 9 GLY C 54 PHE C 55 GLY C 56 GLU C 58 SITE 3 AC1 9 TRP C 59 SITE 1 AC2 5 GLY A 124 SER A 125 ALA A 148 ARG A 149 SITE 2 AC2 5 ASN A 150 SITE 1 AC3 8 LYS A 7 GLY A 54 GLY A 56 TRP A 59 SITE 2 AC3 8 HOH A 484 ALA B 45 ARG B 74 HOH B 411 SITE 1 AC4 5 GLY B 124 SER B 125 ALA B 148 ARG B 149 SITE 2 AC4 5 ASN B 150 SITE 1 AC5 5 GLY C 124 SER C 125 ALA C 148 ARG C 149 SITE 2 AC5 5 ASN C 150 CRYST1 128.568 132.696 38.612 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025899 0.00000