data_4P5J # _entry.id 4P5J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4P5J pdb_00004p5j 10.2210/pdb4p5j/pdb WWPDB D_1000200737 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-06-04 2 'Structure model' 1 1 2014-06-25 3 'Structure model' 1 2 2014-07-30 4 'Structure model' 1 3 2014-10-01 5 'Structure model' 1 4 2017-09-06 6 'Structure model' 1 5 2019-11-20 7 'Structure model' 1 6 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' Advisory 5 5 'Structure model' 'Author supporting evidence' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' Other 9 5 'Structure model' 'Source and taxonomy' 10 6 'Structure model' 'Author supporting evidence' 11 7 'Structure model' 'Data collection' 12 7 'Structure model' 'Database references' 13 7 'Structure model' 'Derived calculations' 14 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' citation 2 5 'Structure model' pdbx_audit_support 3 5 'Structure model' pdbx_database_status 4 5 'Structure model' pdbx_entity_src_syn 5 5 'Structure model' pdbx_struct_assembly 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' pdbx_struct_oper_list 8 5 'Structure model' pdbx_validate_close_contact 9 6 'Structure model' pdbx_audit_support 10 7 'Structure model' chem_comp_atom 11 7 'Structure model' chem_comp_bond 12 7 'Structure model' database_2 13 7 'Structure model' pdbx_struct_conn_angle 14 7 'Structure model' refine_hist 15 7 'Structure model' struct_conn 16 7 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_citation.journal_id_CSD' 2 5 'Structure model' '_pdbx_audit_support.funding_organization' 3 5 'Structure model' '_pdbx_database_status.pdb_format_compatible' 4 5 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 5 5 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 6 5 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 7 6 'Structure model' '_pdbx_audit_support.funding_organization' 8 7 'Structure model' '_database_2.pdbx_DOI' 9 7 'Structure model' '_database_2.pdbx_database_accession' 10 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 7 'Structure model' '_pdbx_struct_conn_angle.value' 13 7 'Structure model' '_struct_conn.conn_type_id' 14 7 'Structure model' '_struct_conn.id' 15 7 'Structure model' '_struct_conn.pdbx_dist_value' 16 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 17 7 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 7 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 7 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 7 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 7 'Structure model' '_struct_conn_type.id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 4P5J _pdbx_database_status.recvd_initial_deposition_date 2014-03-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.methods_development_category . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Colussi, T.M.' 1 'Costantino, D.A.' 2 'Hammond, J.A.' 3 'Ruehle, G.M.' 4 'Nix, J.C.' 5 'Kieft, J.S.' 6 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary Nature NATUAS 0006 1476-4687 ? ? 511 ? 366 369 'The structural basis of transfer RNA mimicry and conformational plasticity by a viral RNA.' 2014 ? 10.1038/nature13378 24909993 ? ? ? ? ? ? ? ? UK ? ? 1 J.Mol.Biol. JMOBAK 0070 1089-8638 ? ? 399 ? 450 463 ;Multi-domain packing in the aminoacylatable 3' end of a plant viral RNA. ; 2010 ? 10.1016/j.jmb.2010.04.016 20398674 ? ? ? ? ? ? ? ? UK ? ? 2 Rna RNARFU 2122 1469-9001 ? ? 15 ? 294 307 'Comparison and functional implications of the 3D architectures of viral tRNA-like structures.' 2009 ? 10.1261/rna.1360709 19144910 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Colussi, T.M.' 1 ? primary 'Costantino, D.A.' 2 ? primary 'Hammond, J.A.' 3 ? primary 'Ruehle, G.M.' 4 ? primary 'Nix, J.C.' 5 ? primary 'Kieft, J.S.' 6 ? 1 'Hammond, J.A.' 7 ? 1 'Rambo, R.P.' 8 ? 1 'Kieft, J.S.' 9 ? 2 'Hammond, J.A.' 10 ? 2 'Rambo, R.P.' 11 ? 2 'Filbin, M.E.' 12 ? 2 'Kieft, J.S.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Turnip yellow mosaic virus mRNA for the coat protein' 27593.316 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn 'IRIDIUM HEXAMMINE ION' 294.400 12 ? ? ? ? 4 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 5 water nat water 18.015 126 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;UUAGCUCGCCAGUUAGCGAGGUCUGUCUCGACACGACAGAUAAUCGGGUGCAACUCCCGCCCCUCUUCCGAGGGUCAUCG GAACC(A23) ; _entity_poly.pdbx_seq_one_letter_code_can ;UUAGCUCGCCAGUUAGCGAGGUCUGUCUCGACACGACAGAUAAUCGGGUGCAACUCCCGCCCCUCUUCCGAGGGUCAUCG GAACCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'IRIDIUM HEXAMMINE ION' IRI 4 SPERMINE SPM 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 A n 1 4 G n 1 5 C n 1 6 U n 1 7 C n 1 8 G n 1 9 C n 1 10 C n 1 11 A n 1 12 G n 1 13 U n 1 14 U n 1 15 A n 1 16 G n 1 17 C n 1 18 G n 1 19 A n 1 20 G n 1 21 G n 1 22 U n 1 23 C n 1 24 U n 1 25 G n 1 26 U n 1 27 C n 1 28 U n 1 29 C n 1 30 G n 1 31 A n 1 32 C n 1 33 A n 1 34 C n 1 35 G n 1 36 A n 1 37 C n 1 38 A n 1 39 G n 1 40 A n 1 41 U n 1 42 A n 1 43 A n 1 44 U n 1 45 C n 1 46 G n 1 47 G n 1 48 G n 1 49 U n 1 50 G n 1 51 C n 1 52 A n 1 53 A n 1 54 C n 1 55 U n 1 56 C n 1 57 C n 1 58 C n 1 59 G n 1 60 C n 1 61 C n 1 62 C n 1 63 C n 1 64 U n 1 65 C n 1 66 U n 1 67 U n 1 68 C n 1 69 C n 1 70 G n 1 71 A n 1 72 G n 1 73 G n 1 74 G n 1 75 U n 1 76 C n 1 77 A n 1 78 U n 1 79 C n 1 80 G n 1 81 G n 1 82 A n 1 83 A n 1 84 C n 1 85 C n 1 86 A23 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 86 _pdbx_entity_src_syn.organism_scientific 'Turnip yellow mosaic virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 12154 _pdbx_entity_src_syn.details 'RNA was prepared by in vitro transcription with T7 RNA polymerase' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A23 'RNA linking' n ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O9 P2' 409.186 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 IRI non-polymer . 'IRIDIUM HEXAMMINE ION' ? 'H18 Ir N6 3' 294.400 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 -1 ? ? ? A . n A 1 2 U 2 0 ? ? ? A . n A 1 3 A 3 1 1 A A A . n A 1 4 G 4 2 2 G G A . n A 1 5 C 5 3 3 C C A . n A 1 6 U 6 4 4 U U A . n A 1 7 C 7 5 5 C C A . n A 1 8 G 8 6 6 G G A . n A 1 9 C 9 7 7 C C A . n A 1 10 C 10 8 8 C C A . n A 1 11 A 11 9 9 A A A . n A 1 12 G 12 10 10 G G A . n A 1 13 U 13 11 11 U U A . n A 1 14 U 14 12 12 U U A . n A 1 15 A 15 13 13 A A A . n A 1 16 G 16 14 14 G G A . n A 1 17 C 17 15 15 C C A . n A 1 18 G 18 16 16 G G A . n A 1 19 A 19 17 17 A A A . n A 1 20 G 20 18 18 G G A . n A 1 21 G 21 19 19 G G A . n A 1 22 U 22 20 20 U U A . n A 1 23 C 23 21 21 C C A . n A 1 24 U 24 22 22 U U A . n A 1 25 G 25 23 23 G G A . n A 1 26 U 26 24 24 U U A . n A 1 27 C 27 25 25 C C A . n A 1 28 U 28 26 26 U U A . n A 1 29 C 29 27 27 C C A . n A 1 30 G 30 28 28 G G A . n A 1 31 A 31 29 29 A A A . n A 1 32 C 32 30 30 C C A . n A 1 33 A 33 31 31 A A A . n A 1 34 C 34 32 32 C C A . n A 1 35 G 35 33 33 G G A . n A 1 36 A 36 34 34 A A A . n A 1 37 C 37 35 35 C C A . n A 1 38 A 38 36 36 A A A . n A 1 39 G 39 37 37 G G A . n A 1 40 A 40 38 38 A A A . n A 1 41 U 41 39 39 U U A . n A 1 42 A 42 40 40 A A A . n A 1 43 A 43 41 41 A A A . n A 1 44 U 44 42 42 U U A . n A 1 45 C 45 43 43 C C A . n A 1 46 G 46 44 44 G G A . n A 1 47 G 47 45 45 G G A . n A 1 48 G 48 46 46 G G A . n A 1 49 U 49 47 47 U U A . n A 1 50 G 50 48 48 G G A . n A 1 51 C 51 49 49 C C A . n A 1 52 A 52 50 50 A A A . n A 1 53 A 53 51 51 A A A . n A 1 54 C 54 52 52 C C A . n A 1 55 U 55 53 53 U U A . n A 1 56 C 56 54 54 C C A . n A 1 57 C 57 55 55 C C A . n A 1 58 C 58 56 56 C C A . n A 1 59 G 59 57 57 G G A . n A 1 60 C 60 58 58 C C A . n A 1 61 C 61 59 59 C C A . n A 1 62 C 62 60 60 C C A . n A 1 63 C 63 61 61 C C A . n A 1 64 U 64 62 62 U U A . n A 1 65 C 65 63 63 C C A . n A 1 66 U 66 64 64 U U A . n A 1 67 U 67 65 65 U U A . n A 1 68 C 68 66 66 C C A . n A 1 69 C 69 67 67 C C A . n A 1 70 G 70 68 68 G G A . n A 1 71 A 71 69 69 A A A . n A 1 72 G 72 70 70 G G A . n A 1 73 G 73 71 71 G G A . n A 1 74 G 74 72 72 G G A . n A 1 75 U 75 73 73 U U A . n A 1 76 C 76 74 74 C C A . n A 1 77 A 77 75 75 A A A . n A 1 78 U 78 76 76 U U A . n A 1 79 C 79 77 77 C C A . n A 1 80 G 80 78 78 G G A . n A 1 81 G 81 79 79 G G A . n A 1 82 A 82 80 80 A A A . n A 1 83 A 83 81 81 A A A . n A 1 84 C 84 82 82 C C A . n A 1 85 C 85 83 83 C C A . n A 1 86 A23 86 84 84 A23 A23 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 1 MG MG A . C 2 MG 1 102 1 MG MG A . D 3 IRI 1 103 1 IRI IRI A . E 3 IRI 1 104 1 IRI IRI A . F 3 IRI 1 105 1 IRI IRI A . G 3 IRI 1 106 1 IRI IRI A . H 3 IRI 1 107 1 IRI IRI A . I 3 IRI 1 108 1 IRI IRI A . J 3 IRI 1 109 1 IRI IRI A . K 3 IRI 1 110 1 IRI IRI A . L 3 IRI 1 111 1 IRI IRI A . M 3 IRI 1 112 1 IRI IRI A . N 3 IRI 1 113 1 IRI IRI A . O 3 IRI 1 114 1 IRI IRI A . P 4 SPM 1 115 1 SPM SPM A . Q 5 HOH 1 201 16 HOH HOH A . Q 5 HOH 2 202 40 HOH HOH A . Q 5 HOH 3 203 61 HOH HOH A . Q 5 HOH 4 204 15 HOH HOH A . Q 5 HOH 5 205 62 HOH HOH A . Q 5 HOH 6 206 43 HOH HOH A . Q 5 HOH 7 207 72 HOH HOH A . Q 5 HOH 8 208 58 HOH HOH A . Q 5 HOH 9 209 46 HOH HOH A . Q 5 HOH 10 210 112 HOH HOH A . Q 5 HOH 11 211 19 HOH HOH A . Q 5 HOH 12 212 53 HOH HOH A . Q 5 HOH 13 213 29 HOH HOH A . Q 5 HOH 14 214 45 HOH HOH A . Q 5 HOH 15 215 48 HOH HOH A . Q 5 HOH 16 216 22 HOH HOH A . Q 5 HOH 17 217 49 HOH HOH A . Q 5 HOH 18 218 44 HOH HOH A . Q 5 HOH 19 219 31 HOH HOH A . Q 5 HOH 20 220 57 HOH HOH A . Q 5 HOH 21 221 120 HOH HOH A . Q 5 HOH 22 222 54 HOH HOH A . Q 5 HOH 23 223 123 HOH HOH A . Q 5 HOH 24 224 1 HOH HOH A . Q 5 HOH 25 225 2 HOH HOH A . Q 5 HOH 26 226 3 HOH HOH A . Q 5 HOH 27 227 4 HOH HOH A . Q 5 HOH 28 228 5 HOH HOH A . Q 5 HOH 29 229 6 HOH HOH A . Q 5 HOH 30 230 7 HOH HOH A . Q 5 HOH 31 231 8 HOH HOH A . Q 5 HOH 32 232 9 HOH HOH A . Q 5 HOH 33 233 10 HOH HOH A . Q 5 HOH 34 234 11 HOH HOH A . Q 5 HOH 35 235 12 HOH HOH A . Q 5 HOH 36 236 13 HOH HOH A . Q 5 HOH 37 237 14 HOH HOH A . Q 5 HOH 38 238 17 HOH HOH A . Q 5 HOH 39 239 18 HOH HOH A . Q 5 HOH 40 240 20 HOH HOH A . Q 5 HOH 41 241 21 HOH HOH A . Q 5 HOH 42 242 23 HOH HOH A . Q 5 HOH 43 243 24 HOH HOH A . Q 5 HOH 44 244 25 HOH HOH A . Q 5 HOH 45 245 26 HOH HOH A . Q 5 HOH 46 246 27 HOH HOH A . Q 5 HOH 47 247 28 HOH HOH A . Q 5 HOH 48 248 30 HOH HOH A . Q 5 HOH 49 249 32 HOH HOH A . Q 5 HOH 50 250 33 HOH HOH A . Q 5 HOH 51 251 34 HOH HOH A . Q 5 HOH 52 252 35 HOH HOH A . Q 5 HOH 53 253 36 HOH HOH A . Q 5 HOH 54 254 37 HOH HOH A . Q 5 HOH 55 255 38 HOH HOH A . Q 5 HOH 56 256 39 HOH HOH A . Q 5 HOH 57 257 41 HOH HOH A . Q 5 HOH 58 258 42 HOH HOH A . Q 5 HOH 59 259 47 HOH HOH A . Q 5 HOH 60 260 50 HOH HOH A . Q 5 HOH 61 261 51 HOH HOH A . Q 5 HOH 62 262 52 HOH HOH A . Q 5 HOH 63 263 55 HOH HOH A . Q 5 HOH 64 264 56 HOH HOH A . Q 5 HOH 65 265 59 HOH HOH A . Q 5 HOH 66 266 60 HOH HOH A . Q 5 HOH 67 267 63 HOH HOH A . Q 5 HOH 68 268 64 HOH HOH A . Q 5 HOH 69 269 65 HOH HOH A . Q 5 HOH 70 270 66 HOH HOH A . Q 5 HOH 71 271 67 HOH HOH A . Q 5 HOH 72 272 68 HOH HOH A . Q 5 HOH 73 273 69 HOH HOH A . Q 5 HOH 74 274 70 HOH HOH A . Q 5 HOH 75 275 71 HOH HOH A . Q 5 HOH 76 276 73 HOH HOH A . Q 5 HOH 77 277 74 HOH HOH A . Q 5 HOH 78 278 75 HOH HOH A . Q 5 HOH 79 279 76 HOH HOH A . Q 5 HOH 80 280 77 HOH HOH A . Q 5 HOH 81 281 78 HOH HOH A . Q 5 HOH 82 282 79 HOH HOH A . Q 5 HOH 83 283 80 HOH HOH A . Q 5 HOH 84 284 81 HOH HOH A . Q 5 HOH 85 285 82 HOH HOH A . Q 5 HOH 86 286 83 HOH HOH A . Q 5 HOH 87 287 84 HOH HOH A . Q 5 HOH 88 288 85 HOH HOH A . Q 5 HOH 89 289 86 HOH HOH A . Q 5 HOH 90 290 87 HOH HOH A . Q 5 HOH 91 291 88 HOH HOH A . Q 5 HOH 92 292 89 HOH HOH A . Q 5 HOH 93 293 90 HOH HOH A . Q 5 HOH 94 294 91 HOH HOH A . Q 5 HOH 95 295 92 HOH HOH A . Q 5 HOH 96 296 93 HOH HOH A . Q 5 HOH 97 297 94 HOH HOH A . Q 5 HOH 98 298 95 HOH HOH A . Q 5 HOH 99 299 96 HOH HOH A . Q 5 HOH 100 300 97 HOH HOH A . Q 5 HOH 101 301 98 HOH HOH A . Q 5 HOH 102 302 99 HOH HOH A . Q 5 HOH 103 303 100 HOH HOH A . Q 5 HOH 104 304 101 HOH HOH A . Q 5 HOH 105 305 102 HOH HOH A . Q 5 HOH 106 306 103 HOH HOH A . Q 5 HOH 107 307 104 HOH HOH A . Q 5 HOH 108 308 105 HOH HOH A . Q 5 HOH 109 309 106 HOH HOH A . Q 5 HOH 110 310 107 HOH HOH A . Q 5 HOH 111 311 108 HOH HOH A . Q 5 HOH 112 312 109 HOH HOH A . Q 5 HOH 113 313 110 HOH HOH A . Q 5 HOH 114 314 111 HOH HOH A . Q 5 HOH 115 315 113 HOH HOH A . Q 5 HOH 116 316 114 HOH HOH A . Q 5 HOH 117 317 115 HOH HOH A . Q 5 HOH 118 318 116 HOH HOH A . Q 5 HOH 119 319 117 HOH HOH A . Q 5 HOH 120 320 118 HOH HOH A . Q 5 HOH 121 321 119 HOH HOH A . Q 5 HOH 122 322 121 HOH HOH A . Q 5 HOH 123 323 122 HOH HOH A . Q 5 HOH 124 324 124 HOH HOH A . Q 5 HOH 125 325 125 HOH HOH A . Q 5 HOH 126 326 126 HOH HOH A . # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version '(phenix.refine: 1.8.4_1496)' _software.pdbx_ordinal 1 # _cell.entry_id 4P5J _cell.length_a 55.270 _cell.length_b 101.570 _cell.length_c 111.610 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P5J _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # _exptl.absorpt_coefficient_mu . _exptl.absorpt_correction_T_max . _exptl.absorpt_correction_T_min . _exptl.absorpt_correction_type . _exptl.absorpt_process_details . _exptl.entry_id 4P5J _exptl.crystals_number 1 _exptl.details . _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details . # _exptl_crystal.colour . _exptl_crystal.density_diffrn . _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_method . _exptl_crystal.density_percent_sol 56.76 _exptl_crystal.description . _exptl_crystal.F_000 . _exptl_crystal.id 1 _exptl_crystal.preparation . _exptl_crystal.size_max . _exptl_crystal.size_mid . _exptl_crystal.size_min . _exptl_crystal.size_rad . _exptl_crystal.colour_lustre . _exptl_crystal.colour_modifier . _exptl_crystal.colour_primary . _exptl_crystal.density_meas . _exptl_crystal.density_meas_esd . _exptl_crystal.density_meas_gt . _exptl_crystal.density_meas_lt . _exptl_crystal.density_meas_temp . _exptl_crystal.density_meas_temp_esd . _exptl_crystal.density_meas_temp_gt . _exptl_crystal.density_meas_temp_lt . _exptl_crystal.pdbx_crystal_image_url . _exptl_crystal.pdbx_crystal_image_format . _exptl_crystal.pdbx_mosaicity . _exptl_crystal.pdbx_mosaicity_esd . # _exptl_crystal_grow.apparatus . _exptl_crystal_grow.atmosphere . _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details . _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref . _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure . _exptl_crystal_grow.pressure_esd . _exptl_crystal_grow.seeding . _exptl_crystal_grow.seeding_ref . _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details . _exptl_crystal_grow.temp_esd . _exptl_crystal_grow.time . _exptl_crystal_grow.pdbx_details ;This RNA was prepared for crystallography in a solution containing 5 mg/mL RNA, 2.5 mM MgCl2, and 10 mM HEPES-KOH pH 7.5. This mixture was heated to 65?C for 3 minutes, then cooled at room temperature. After cooling, Spermidine was added to 0.5 mM. The reaction was centrifuged for 10 minutes at 13000 x g and then used in sitting-drop vapor diffusion crystallization at 4?C. 1 ?L of RNA solution was combined with 2 ?L of 10% MPD, 40 mM Na-Cacodylate pH 6.0, 12 mM Spermine, 80 mM NaCl, and 20 mM MgCl2. The well solution was 20-35% MPD. Crystals appeared and grew to full size over the course of 1-2 days. ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.ambient_environment . _diffrn.ambient_temp 100 _diffrn.ambient_temp_details . _diffrn.ambient_temp_esd . _diffrn.crystal_id 1 _diffrn.crystal_support . _diffrn.crystal_treatment . _diffrn.details . _diffrn.id 1 _diffrn.ambient_pressure . _diffrn.ambient_pressure_esd . _diffrn.ambient_pressure_gt . _diffrn.ambient_pressure_lt . _diffrn.ambient_temp_gt . _diffrn.ambient_temp_lt . # _diffrn_detector.details . _diffrn_detector.detector CMOS _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RDI CMOS_8M' _diffrn_detector.area_resol_mean . _diffrn_detector.dtime . _diffrn_detector.pdbx_frames_total . _diffrn_detector.pdbx_collection_time_total . _diffrn_detector.pdbx_collection_date 2013-10-21 # _diffrn_radiation.collimation . _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge . _diffrn_radiation.inhomogeneity . _diffrn_radiation.monochromator 'Rosenbaum-Rock Si(111) sagitally focused monochromator' _diffrn_radiation.polarisn_norm . _diffrn_radiation.polarisn_ratio . _diffrn_radiation.probe . _diffrn_radiation.type . _diffrn_radiation.xray_symbol . _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list . _diffrn_radiation.pdbx_wavelength . _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer . _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0972 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current . _diffrn_source.details . _diffrn_source.diffrn_id 1 _diffrn_source.power . _diffrn_source.size . _diffrn_source.source SYNCHROTRON _diffrn_source.target . _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.voltage . _diffrn_source.take-off_angle . _diffrn_source.pdbx_wavelength_list 1.0972 _diffrn_source.pdbx_wavelength . _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate . _reflns.entry_id 4P5J _reflns.data_reduction_details . _reflns.data_reduction_method . _reflns.d_resolution_high 1.99 _reflns.d_resolution_low 66.0 _reflns.details . _reflns.limit_h_max . _reflns.limit_h_min . _reflns.limit_k_max . _reflns.limit_k_min . _reflns.limit_l_max . _reflns.limit_l_min . _reflns.number_all . _reflns.number_obs 41343 _reflns.observed_criterion . _reflns.observed_criterion_F_max . _reflns.observed_criterion_F_min . _reflns.observed_criterion_I_max . _reflns.observed_criterion_I_min . _reflns.observed_criterion_sigma_F . _reflns.observed_criterion_sigma_I 2.0 _reflns.percent_possible_obs 99.4 _reflns.R_free_details . _reflns.Rmerge_F_all . _reflns.Rmerge_F_obs . _reflns.Friedel_coverage . _reflns.number_gt . _reflns.threshold_expression . _reflns.pdbx_redundancy 7.45 _reflns.pdbx_Rmerge_I_obs .054 _reflns.pdbx_Rmerge_I_all . _reflns.pdbx_Rsym_value . _reflns.pdbx_netI_over_av_sigmaI . _reflns.pdbx_netI_over_sigmaI 21.71 _reflns.pdbx_res_netI_over_av_sigmaI_2 . _reflns.pdbx_res_netI_over_sigmaI_2 . _reflns.pdbx_chi_squared . _reflns.pdbx_scaling_rejects . _reflns.pdbx_d_res_high_opt . _reflns.pdbx_d_res_low_opt . _reflns.pdbx_d_res_opt_method . _reflns.phase_calculation_details . _reflns.pdbx_Rrim_I_all . _reflns.pdbx_Rpim_I_all . _reflns.pdbx_d_opt . _reflns.pdbx_number_measured_all . _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.99 _reflns_shell.d_res_low 2.03 _reflns_shell.meanI_over_sigI_all . _reflns_shell.meanI_over_sigI_obs 2.19 _reflns_shell.number_measured_all . _reflns_shell.number_measured_obs . _reflns_shell.number_possible . _reflns_shell.number_unique_all . _reflns_shell.number_unique_obs . _reflns_shell.percent_possible_all 94.7 _reflns_shell.percent_possible_obs . _reflns_shell.Rmerge_F_all . _reflns_shell.Rmerge_F_obs . _reflns_shell.Rmerge_I_all . _reflns_shell.Rmerge_I_obs .82 _reflns_shell.meanI_over_sigI_gt . _reflns_shell.meanI_over_uI_all . _reflns_shell.meanI_over_uI_gt . _reflns_shell.number_measured_gt . _reflns_shell.number_unique_gt . _reflns_shell.percent_possible_gt . _reflns_shell.Rmerge_F_gt . _reflns_shell.Rmerge_I_gt . _reflns_shell.pdbx_redundancy . _reflns_shell.pdbx_Rsym_value . _reflns_shell.pdbx_chi_squared . _reflns_shell.pdbx_netI_over_sigmaI_all . _reflns_shell.pdbx_netI_over_sigmaI_obs . _reflns_shell.pdbx_Rrim_I_all . _reflns_shell.pdbx_Rpim_I_all . _reflns_shell.pdbx_rejects . _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4P5J _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 41334 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.871 _refine.ls_d_res_high 1.9912 _refine.ls_percent_reflns_obs 99.46 _refine.ls_R_factor_obs 0.2088 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2057 _refine.ls_R_factor_R_free 0.2396 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.17 _refine.ls_number_reflns_R_free 3790 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.23 _refine.pdbx_overall_phase_error 27.57 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1785 _refine_hist.pdbx_number_atoms_ligand 100 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 2011 _refine_hist.d_res_high 1.9912 _refine_hist.d_res_low 28.871 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.011 ? ? 2078 'X-RAY DIFFRACTION' ? f_angle_d 1.791 ? ? 3295 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.148 ? ? 1042 'X-RAY DIFFRACTION' ? f_chiral_restr 0.082 ? ? 420 'X-RAY DIFFRACTION' ? f_plane_restr 0.013 ? ? 84 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.9912 2.0164 1239 0.3046 90.00 0.3259 . . 126 . . . . 'X-RAY DIFFRACTION' . 2.0164 2.0430 1395 0.2973 100.00 0.3908 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.0430 2.0709 1410 0.2883 100.00 0.3024 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.0709 2.1005 1379 0.2830 100.00 0.3230 . . 136 . . . . 'X-RAY DIFFRACTION' . 2.1005 2.1319 1391 0.2746 100.00 0.2785 . . 140 . . . . 'X-RAY DIFFRACTION' . 2.1319 2.1652 1396 0.2567 100.00 0.2982 . . 140 . . . . 'X-RAY DIFFRACTION' . 2.1652 2.2007 1388 0.2360 100.00 0.2496 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.2007 2.2386 1410 0.2346 100.00 0.2812 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.2386 2.2793 1401 0.2277 100.00 0.2925 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.2793 2.3231 1363 0.2262 100.00 0.2641 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.3231 2.3705 1413 0.2316 100.00 0.2825 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.3705 2.4220 1419 0.2279 100.00 0.2770 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.4220 2.4783 1377 0.2295 100.00 0.2489 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.4783 2.5403 1396 0.2501 100.00 0.3312 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.5403 2.6089 1396 0.2497 100.00 0.2752 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.6089 2.6856 1404 0.2521 100.00 0.2989 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.6856 2.7722 1400 0.2557 100.00 0.2850 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.7722 2.8712 1395 0.2741 100.00 0.2994 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.8712 2.9861 1391 0.2373 100.00 0.3721 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.9861 3.1218 1404 0.2053 100.00 0.2124 . . 143 . . . . 'X-RAY DIFFRACTION' . 3.1218 3.2862 1403 0.1825 100.00 0.2412 . . 136 . . . . 'X-RAY DIFFRACTION' . 3.2862 3.4918 1413 0.1804 100.00 0.2382 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.4918 3.7608 1369 0.1743 100.00 0.1896 . . 139 . . . . 'X-RAY DIFFRACTION' . 3.7608 4.1383 1421 0.1764 100.00 0.2050 . . 143 . . . . 'X-RAY DIFFRACTION' . 4.1383 4.7349 1387 0.1695 100.00 0.1714 . . 144 . . . . 'X-RAY DIFFRACTION' . 4.7349 5.9568 1392 0.1556 100.00 0.2057 . . 138 . . . . 'X-RAY DIFFRACTION' . 5.9568 28.8736 1392 0.2029 98.00 0.2058 . . 138 . . . . # _struct.entry_id 4P5J _struct.title 'Crystal structure of the tRNA-like structure from Turnip Yellow Mosaic Virus (TYMV), a tRNA mimicking RNA' _struct.pdbx_model_details . _struct.pdbx_formula_weight . _struct.pdbx_formula_weight_method . _struct.pdbx_model_type_details . _struct.pdbx_CASP_flag . # _struct_keywords.entry_id 4P5J _struct_keywords.text 'tRNA-mimic viral RNA Pseudoknot multifunctional, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 4 ? Q N N 5 ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code V01418.1 _struct_ref.pdbx_db_accession 62226 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;UUAGCUCGCCAGUUAGCGAGGUCUGUCCCCACACGACAGAUAAUCGGGUGCAACUCCCGCCCCUCUUCCGAGGGUCAUCG GAACCA ; _struct_ref.pdbx_align_begin 610 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4P5J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 86 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 62226 _struct_ref_seq.db_align_beg 610 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 695 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 84 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4P5J U A 28 ? GB 62226 C 637 conflict 26 1 1 4P5J G A 30 ? GB 62226 C 639 conflict 28 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4020 ? 1 MORE -40 ? 1 'SSA (A^2)' 14100 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 85 "O3'" ? ? ? 1_555 A A23 86 P ? ? A C 83 A A23 84 1_555 ? ? ? ? ? ? ? 1.592 ? ? metalc1 metalc ? ? A A 42 OP2 ? ? ? 1_555 C MG . MG ? ? A A 40 A MG 102 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 101 A HOH 224 1_555 ? ? ? ? ? ? ? 2.033 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 101 A HOH 226 1_555 ? ? ? ? ? ? ? 2.129 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 101 A HOH 227 1_555 ? ? ? ? ? ? ? 2.021 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 101 A HOH 229 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 101 A HOH 236 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 101 A HOH 237 1_555 ? ? ? ? ? ? ? 2.197 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 102 A HOH 225 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 102 A HOH 228 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 102 A HOH 244 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 102 A HOH 252 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc12 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 102 A HOH 273 1_555 ? ? ? ? ? ? ? 2.144 ? ? hydrog1 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 76 N3 ? ? A G 2 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 76 O2 ? ? A G 2 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 76 N4 ? ? A G 2 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 3 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 3 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 3 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 19 N1 ? ? A U 4 A A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 19 N6 ? ? A U 4 A A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 5 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 5 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 5 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 6 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 6 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 6 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 7 A G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 7 A G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 7 A G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 10 N4 ? ? ? 1_555 A C 54 O2 ? ? A C 8 A C 52 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog19 hydrog ? ? A C 10 O2 ? ? ? 1_555 A C 54 N4 ? ? A C 8 A C 52 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog20 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 50 N3 ? ? A A 9 A G 48 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog21 hydrog ? ? A A 11 N7 ? ? ? 1_555 A G 50 N2 ? ? A A 9 A G 48 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog22 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 51 N3 ? ? A G 10 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 51 O2 ? ? A G 10 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 51 N4 ? ? A G 10 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 21 N1 ? ? ? 1_555 A U 41 O2 ? ? A G 19 A U 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A G 21 O6 ? ? ? 1_555 A U 41 N3 ? ? A G 19 A U 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 40 N1 ? ? A U 20 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 40 N6 ? ? A U 20 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 39 N1 ? ? A C 21 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 39 O6 ? ? A C 21 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 21 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 24 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 22 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 24 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 22 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 23 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 23 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 23 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 26 N3 ? ? ? 1_555 A A 36 N1 ? ? A U 24 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 26 O4 ? ? ? 1_555 A A 36 N6 ? ? A U 24 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 25 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 25 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 25 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 28 O4 ? ? ? 1_555 A C 34 N4 ? ? A U 26 A C 32 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog43 hydrog ? ? A C 45 N3 ? ? ? 1_555 A G 59 N1 ? ? A C 43 A G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 45 N4 ? ? ? 1_555 A G 59 O6 ? ? A C 43 A G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 45 O2 ? ? ? 1_555 A G 59 N2 ? ? A C 43 A G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 46 N1 ? ? ? 1_555 A C 58 N3 ? ? A G 44 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 46 N2 ? ? ? 1_555 A C 58 O2 ? ? A G 44 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 46 O6 ? ? ? 1_555 A C 58 N4 ? ? A G 44 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 47 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 45 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 47 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 45 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 47 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 45 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 48 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 46 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 48 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 46 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 48 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 46 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 49 N3 ? ? ? 1_555 A A 53 N7 ? ? A U 47 A A 51 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog56 hydrog ? ? A U 49 O2 ? ? ? 1_555 A A 53 N6 ? ? A U 47 A A 51 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog57 hydrog ? ? A C 60 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 58 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 60 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 58 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 60 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 58 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 61 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 59 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 61 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 59 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 61 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 59 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 62 N3 ? ? ? 1_555 A G 72 N1 ? ? A C 60 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 62 N4 ? ? ? 1_555 A G 72 O6 ? ? A C 60 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 62 O2 ? ? ? 1_555 A G 72 N2 ? ? A C 60 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 63 O2 ? ? ? 1_555 A C 79 N4 ? ? A C 61 A C 77 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog67 hydrog ? ? A C 65 N4 ? ? ? 1_555 A C 85 O2 ? ? A C 63 A C 83 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog68 hydrog ? ? A C 65 O2 ? ? ? 1_555 A C 85 N4 ? ? A C 63 A C 83 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog69 hydrog ? ? A U 66 N3 ? ? ? 1_555 A A 83 N1 ? ? A U 64 A A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A U 66 O4 ? ? ? 1_555 A A 83 N6 ? ? A U 64 A A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A U 67 N3 ? ? ? 1_555 A A 82 N1 ? ? A U 65 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 67 O4 ? ? ? 1_555 A A 82 N6 ? ? A U 65 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 68 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 66 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 68 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 66 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 68 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 66 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 69 N3 ? ? ? 1_555 A G 80 N1 ? ? A C 67 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 69 N4 ? ? ? 1_555 A G 80 O6 ? ? A C 67 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 69 O2 ? ? ? 1_555 A G 80 N2 ? ? A C 67 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 70 N1 ? ? ? 1_555 A C 79 N3 ? ? A G 68 A C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 70 N2 ? ? ? 1_555 A C 79 O2 ? ? A G 68 A C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 70 O6 ? ? ? 1_555 A C 79 N4 ? ? A G 68 A C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A A 71 N1 ? ? ? 1_555 A U 78 N3 ? ? A A 69 A U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A A 71 N6 ? ? ? 1_555 A U 78 O4 ? ? A A 69 A U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 73 N2 ? ? ? 1_555 A A 77 N3 ? ? A G 71 A A 75 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 42 ? A A 40 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 225 ? 1_555 90.7 ? 2 OP2 ? A A 42 ? A A 40 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 228 ? 1_555 80.8 ? 3 O ? Q HOH . ? A HOH 225 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 228 ? 1_555 78.2 ? 4 OP2 ? A A 42 ? A A 40 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 244 ? 1_555 81.3 ? 5 O ? Q HOH . ? A HOH 225 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 244 ? 1_555 152.8 ? 6 O ? Q HOH . ? A HOH 228 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 244 ? 1_555 74.9 ? 7 OP2 ? A A 42 ? A A 40 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 252 ? 1_555 156.8 ? 8 O ? Q HOH . ? A HOH 225 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 252 ? 1_555 76.7 ? 9 O ? Q HOH . ? A HOH 228 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 252 ? 1_555 77.6 ? 10 O ? Q HOH . ? A HOH 244 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 252 ? 1_555 101.0 ? 11 OP2 ? A A 42 ? A A 40 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 273 ? 1_555 111.7 ? 12 O ? Q HOH . ? A HOH 225 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 273 ? 1_555 90.7 ? 13 O ? Q HOH . ? A HOH 228 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 273 ? 1_555 163.6 ? 14 O ? Q HOH . ? A HOH 244 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 273 ? 1_555 116.4 ? 15 O ? Q HOH . ? A HOH 252 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 273 ? 1_555 88.2 ? 16 O ? Q HOH . ? A HOH 224 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 226 ? 1_555 88.2 ? 17 O ? Q HOH . ? A HOH 224 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 227 ? 1_555 88.8 ? 18 O ? Q HOH . ? A HOH 226 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 227 ? 1_555 174.8 ? 19 O ? Q HOH . ? A HOH 224 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 229 ? 1_555 172.6 ? 20 O ? Q HOH . ? A HOH 226 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 229 ? 1_555 87.6 ? 21 O ? Q HOH . ? A HOH 227 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 229 ? 1_555 95.9 ? 22 O ? Q HOH . ? A HOH 224 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 236 ? 1_555 92.8 ? 23 O ? Q HOH . ? A HOH 226 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 236 ? 1_555 93.1 ? 24 O ? Q HOH . ? A HOH 227 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 236 ? 1_555 82.9 ? 25 O ? Q HOH . ? A HOH 229 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 236 ? 1_555 93.4 ? 26 O ? Q HOH . ? A HOH 224 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 237 ? 1_555 94.2 ? 27 O ? Q HOH . ? A HOH 226 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 237 ? 1_555 91.5 ? 28 O ? Q HOH . ? A HOH 227 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 237 ? 1_555 92.9 ? 29 O ? Q HOH . ? A HOH 229 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 237 ? 1_555 79.9 ? 30 O ? Q HOH . ? A HOH 236 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? Q HOH . ? A HOH 237 ? 1_555 171.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 6 'binding site for residue MG A 101' AC2 Software A MG 102 ? 6 'binding site for residue MG A 102' AC3 Software A IRI 103 ? 11 'binding site for residue IRI A 103' AC4 Software A IRI 104 ? 4 'binding site for residue IRI A 104' AC5 Software A IRI 105 ? 10 'binding site for residue IRI A 105' AC6 Software A IRI 106 ? 6 'binding site for residue IRI A 106' AC7 Software A IRI 107 ? 3 'binding site for residue IRI A 107' AC8 Software A IRI 108 ? 5 'binding site for residue IRI A 108' AC9 Software A IRI 109 ? 6 'binding site for residue IRI A 109' AD1 Software A IRI 110 ? 3 'binding site for residue IRI A 110' AD2 Software A IRI 111 ? 6 'binding site for residue IRI A 111' AD3 Software A IRI 112 ? 3 'binding site for residue IRI A 112' AD4 Software A IRI 113 ? 4 'binding site for residue IRI A 113' AD5 Software A IRI 114 ? 5 'binding site for residue IRI A 114' AD6 Software A SPM 115 ? 5 'binding site for residue SPM A 115' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH Q . ? HOH A 224 . ? 1_555 ? 2 AC1 6 HOH Q . ? HOH A 226 . ? 1_555 ? 3 AC1 6 HOH Q . ? HOH A 227 . ? 1_555 ? 4 AC1 6 HOH Q . ? HOH A 229 . ? 1_555 ? 5 AC1 6 HOH Q . ? HOH A 236 . ? 1_555 ? 6 AC1 6 HOH Q . ? HOH A 237 . ? 1_555 ? 7 AC2 6 A A 42 ? A A 40 . ? 1_555 ? 8 AC2 6 HOH Q . ? HOH A 225 . ? 1_555 ? 9 AC2 6 HOH Q . ? HOH A 228 . ? 1_555 ? 10 AC2 6 HOH Q . ? HOH A 244 . ? 1_555 ? 11 AC2 6 HOH Q . ? HOH A 252 . ? 1_555 ? 12 AC2 6 HOH Q . ? HOH A 273 . ? 1_555 ? 13 AC3 11 G A 46 ? G A 44 . ? 1_555 ? 14 AC3 11 G A 47 ? G A 45 . ? 1_555 ? 15 AC3 11 G A 48 ? G A 46 . ? 1_555 ? 16 AC3 11 A A 53 ? A A 51 . ? 1_555 ? 17 AC3 11 HOH Q . ? HOH A 258 . ? 1_555 ? 18 AC3 11 HOH Q . ? HOH A 272 . ? 1_555 ? 19 AC3 11 HOH Q . ? HOH A 275 . ? 1_555 ? 20 AC3 11 HOH Q . ? HOH A 284 . ? 1_555 ? 21 AC3 11 HOH Q . ? HOH A 286 . ? 1_555 ? 22 AC3 11 HOH Q . ? HOH A 287 . ? 1_555 ? 23 AC3 11 HOH Q . ? HOH A 325 . ? 1_555 ? 24 AC4 4 U A 28 ? U A 26 . ? 1_555 ? 25 AC4 4 C A 32 ? C A 30 . ? 1_555 ? 26 AC4 4 HOH Q . ? HOH A 311 . ? 1_555 ? 27 AC4 4 HOH Q . ? HOH A 319 . ? 1_555 ? 28 AC5 10 C A 58 ? C A 56 . ? 1_555 ? 29 AC5 10 G A 59 ? G A 57 . ? 1_555 ? 30 AC5 10 C A 60 ? C A 58 . ? 1_555 ? 31 AC5 10 G A 73 ? G A 71 . ? 1_555 ? 32 AC5 10 G A 74 ? G A 72 . ? 1_555 ? 33 AC5 10 HOH Q . ? HOH A 248 . ? 1_555 ? 34 AC5 10 HOH Q . ? HOH A 249 . ? 1_555 ? 35 AC5 10 HOH Q . ? HOH A 290 . ? 1_555 ? 36 AC5 10 HOH Q . ? HOH A 291 . ? 1_555 ? 37 AC5 10 HOH Q . ? HOH A 310 . ? 1_555 ? 38 AC6 6 C A 7 ? C A 5 . ? 2_665 ? 39 AC6 6 G A 8 ? G A 6 . ? 2_665 ? 40 AC6 6 G A 80 ? G A 78 . ? 1_555 ? 41 AC6 6 G A 81 ? G A 79 . ? 1_555 ? 42 AC6 6 A23 A 86 ? A23 A 84 . ? 1_555 ? 43 AC6 6 HOH Q . ? HOH A 309 . ? 1_555 ? 44 AC7 3 G A 47 ? G A 45 . ? 2_565 ? 45 AC7 3 C A 62 ? C A 60 . ? 1_555 ? 46 AC7 3 U A 64 ? U A 62 . ? 1_555 ? 47 AC8 5 U A 49 ? U A 47 . ? 1_555 ? 48 AC8 5 G A 50 ? G A 48 . ? 1_555 ? 49 AC8 5 A A 52 ? A A 50 . ? 1_555 ? 50 AC8 5 HOH Q . ? HOH A 203 . ? 1_555 ? 51 AC8 5 HOH Q . ? HOH A 268 . ? 1_555 ? 52 AC9 6 A A 19 ? A A 17 . ? 1_555 ? 53 AC9 6 G A 20 ? G A 18 . ? 1_555 ? 54 AC9 6 G A 21 ? G A 19 . ? 1_555 ? 55 AC9 6 U A 41 ? U A 39 . ? 1_555 ? 56 AC9 6 HOH Q . ? HOH A 282 . ? 1_555 ? 57 AC9 6 HOH Q . ? HOH A 303 . ? 1_555 ? 58 AD1 3 C A 62 ? C A 60 . ? 1_555 ? 59 AD1 3 C A 63 ? C A 61 . ? 1_555 ? 60 AD1 3 A A 77 ? A A 75 . ? 1_555 ? 61 AD2 6 C A 45 ? C A 43 . ? 1_555 ? 62 AD2 6 G A 46 ? G A 44 . ? 1_555 ? 63 AD2 6 G A 59 ? G A 57 . ? 1_555 ? 64 AD2 6 C A 60 ? C A 58 . ? 1_555 ? 65 AD2 6 C A 61 ? C A 59 . ? 1_555 ? 66 AD2 6 U A 75 ? U A 73 . ? 1_555 ? 67 AD3 3 A A 3 ? A A 1 . ? 3_655 ? 68 AD3 3 G A 4 ? G A 2 . ? 3_655 ? 69 AD3 3 U A 24 ? U A 22 . ? 1_555 ? 70 AD4 4 U A 13 ? U A 11 . ? 1_555 ? 71 AD4 4 U A 14 ? U A 12 . ? 1_555 ? 72 AD4 4 G A 30 ? G A 28 . ? 3_655 ? 73 AD4 4 C A 85 ? C A 83 . ? 7_555 ? 74 AD5 5 G A 16 ? G A 14 . ? 1_555 ? 75 AD5 5 U A 41 ? U A 39 . ? 1_555 ? 76 AD5 5 A A 42 ? A A 40 . ? 1_555 ? 77 AD5 5 A A 43 ? A A 41 . ? 1_555 ? 78 AD5 5 HOH Q . ? HOH A 273 . ? 1_555 ? 79 AD6 5 G A 70 ? G A 68 . ? 2_665 ? 80 AD6 5 G A 80 ? G A 78 . ? 2_665 ? 81 AD6 5 G A 81 ? G A 79 . ? 1_555 ? 82 AD6 5 G A 81 ? G A 79 . ? 2_665 ? 83 AD6 5 A A 82 ? A A 80 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O6 A G 23 ? ? O A HOH 324 ? ? 2.14 2 1 O2 A U 26 ? ? N3 A IRI 104 ? ? 2.17 3 1 N1 A IRI 104 ? ? O A HOH 311 ? ? 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 N3 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 A _pdbx_validate_rmsd_bond.auth_seq_id_1 51 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C4 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 A _pdbx_validate_rmsd_bond.auth_seq_id_2 51 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.380 _pdbx_validate_rmsd_bond.bond_target_value 1.344 _pdbx_validate_rmsd_bond.bond_deviation 0.036 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A C 5 ? ? C4 A C 5 ? ? N4 A C 5 ? ? 113.52 118.00 -4.48 0.70 N 2 1 "O5'" A A 9 ? ? "C5'" A A 9 ? ? "C4'" A A 9 ? ? 104.29 109.40 -5.11 0.80 N 3 1 C4 A G 10 ? ? C5 A G 10 ? ? N7 A G 10 ? ? 108.05 110.80 -2.75 0.40 N 4 1 "O4'" A U 12 ? ? "C1'" A U 12 ? ? N1 A U 12 ? ? 113.38 108.50 4.88 0.70 N 5 1 C8 A G 14 ? ? N9 A G 14 ? ? C4 A G 14 ? ? 109.29 106.40 2.89 0.40 N 6 1 N7 A G 16 ? ? C8 A G 16 ? ? N9 A G 16 ? ? 108.93 113.10 -4.17 0.50 N 7 1 C8 A G 16 ? ? N9 A G 16 ? ? C4 A G 16 ? ? 109.91 106.40 3.51 0.40 N 8 1 N1 A G 16 ? ? C6 A G 16 ? ? O6 A G 16 ? ? 124.10 119.90 4.20 0.60 N 9 1 C5 A G 16 ? ? C6 A G 16 ? ? O6 A G 16 ? ? 123.98 128.60 -4.62 0.60 N 10 1 C5 A G 23 ? ? C6 A G 23 ? ? O6 A G 23 ? ? 123.95 128.60 -4.65 0.60 N 11 1 "O5'" A U 42 ? ? P A U 42 ? ? OP2 A U 42 ? ? 99.73 105.70 -5.97 0.90 N 12 1 C2 A U 42 ? ? N3 A U 42 ? ? C4 A U 42 ? ? 122.98 127.00 -4.02 0.60 N 13 1 OP1 A G 48 ? ? P A G 48 ? ? OP2 A G 48 ? ? 128.63 119.60 9.03 1.50 N 14 1 C2 A G 48 ? ? N3 A G 48 ? ? C4 A G 48 ? ? 116.89 111.90 4.99 0.50 N 15 1 N3 A G 48 ? ? C4 A G 48 ? ? C5 A G 48 ? ? 125.41 128.60 -3.19 0.50 N 16 1 C2 A A 50 ? ? N3 A A 50 ? ? C4 A A 50 ? ? 107.55 110.60 -3.05 0.50 N 17 1 N1 A A 50 ? ? C6 A A 50 ? ? N6 A A 50 ? ? 122.24 118.60 3.64 0.60 N 18 1 C8 A A 51 ? ? N9 A A 51 ? ? C4 A A 51 ? ? 108.66 105.80 2.86 0.40 N 19 1 "O3'" A A 51 ? ? P A C 52 ? ? OP1 A C 52 ? ? 117.36 110.50 6.86 1.10 Y 20 1 "O3'" A C 58 ? ? P A C 59 ? ? OP2 A C 59 ? ? 117.32 110.50 6.82 1.10 Y 21 1 N1 A C 60 ? ? C2 A C 60 ? ? O2 A C 60 ? ? 113.59 118.90 -5.31 0.60 N 22 1 "O5'" A U 62 ? ? P A U 62 ? ? OP2 A U 62 ? ? 99.27 105.70 -6.43 0.90 N 23 1 N3 A C 63 ? ? C4 A C 63 ? ? N4 A C 63 ? ? 113.07 118.00 -4.93 0.70 N 24 1 "O5'" A G 70 ? ? P A G 70 ? ? OP2 A G 70 ? ? 94.70 105.70 -11.00 0.90 N 25 1 "O5'" A G 71 ? ? P A G 71 ? ? OP1 A G 71 ? ? 99.11 105.70 -6.59 0.90 N 26 1 N1 A G 71 ? ? C6 A G 71 ? ? O6 A G 71 ? ? 124.13 119.90 4.23 0.60 N 27 1 C5 A G 71 ? ? C6 A G 71 ? ? O6 A G 71 ? ? 123.96 128.60 -4.64 0.60 N 28 1 C6 A A 75 ? ? N1 A A 75 ? ? C2 A A 75 ? ? 123.03 118.60 4.43 0.60 N 29 1 N1 A A 75 ? ? C2 A A 75 ? ? N3 A A 75 ? ? 125.93 129.30 -3.37 0.50 N 30 1 C6 A U 76 ? ? N1 A U 76 ? ? C2 A U 76 ? ? 124.62 121.00 3.62 0.60 N 31 1 "C5'" A C 77 ? ? "C4'" A C 77 ? ? "O4'" A C 77 ? ? 116.00 109.80 6.20 0.90 N 32 1 "O3'" A C 83 ? ? P A A23 84 ? ? OP2 A A23 84 ? ? 127.21 110.50 16.71 1.10 Y # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 48 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.049 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id A23 _pdbx_struct_mod_residue.label_seq_id 86 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id A23 _pdbx_struct_mod_residue.auth_seq_id 84 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 219 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id Q _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U -1 ? A U 1 2 1 Y 1 A U 0 ? A U 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A23 PC P N S 38 A23 O1C O N N 39 A23 O2C O N N 40 A23 P P N N 41 A23 OP1 O N N 42 A23 OP2 O N N 43 A23 OP3 O N N 44 A23 "O5'" O N N 45 A23 "C5'" C N N 46 A23 "C4'" C N R 47 A23 "O4'" O N N 48 A23 "C3'" C N R 49 A23 "O3'" O N N 50 A23 "C2'" C N R 51 A23 "O2'" O N N 52 A23 "C1'" C N R 53 A23 N9 N Y N 54 A23 C8 C Y N 55 A23 N7 N Y N 56 A23 C5 C Y N 57 A23 C6 C Y N 58 A23 N6 N N N 59 A23 N1 N Y N 60 A23 C2 C Y N 61 A23 N3 N Y N 62 A23 C4 C Y N 63 A23 HOC2 H N N 64 A23 HOP2 H N N 65 A23 HOP3 H N N 66 A23 "H5'" H N N 67 A23 "H5''" H N N 68 A23 "H4'" H N N 69 A23 "H3'" H N N 70 A23 "H2'" H N N 71 A23 "H1'" H N N 72 A23 H8 H N N 73 A23 HN61 H N N 74 A23 HN62 H N N 75 A23 H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 G OP3 O N N 112 G P P N N 113 G OP1 O N N 114 G OP2 O N N 115 G "O5'" O N N 116 G "C5'" C N N 117 G "C4'" C N R 118 G "O4'" O N N 119 G "C3'" C N S 120 G "O3'" O N N 121 G "C2'" C N R 122 G "O2'" O N N 123 G "C1'" C N R 124 G N9 N Y N 125 G C8 C Y N 126 G N7 N Y N 127 G C5 C Y N 128 G C6 C N N 129 G O6 O N N 130 G N1 N N N 131 G C2 C N N 132 G N2 N N N 133 G N3 N N N 134 G C4 C Y N 135 G HOP3 H N N 136 G HOP2 H N N 137 G "H5'" H N N 138 G "H5''" H N N 139 G "H4'" H N N 140 G "H3'" H N N 141 G "HO3'" H N N 142 G "H2'" H N N 143 G "HO2'" H N N 144 G "H1'" H N N 145 G H8 H N N 146 G H1 H N N 147 G H21 H N N 148 G H22 H N N 149 HOH O O N N 150 HOH H1 H N N 151 HOH H2 H N N 152 IRI IR IR N N 153 IRI N1 N N N 154 IRI N2 N N N 155 IRI N3 N N N 156 IRI N4 N N N 157 IRI N5 N N N 158 IRI N6 N N N 159 IRI HN11 H N N 160 IRI HN12 H N N 161 IRI HN13 H N N 162 IRI HN21 H N N 163 IRI HN22 H N N 164 IRI HN23 H N N 165 IRI HN31 H N N 166 IRI HN32 H N N 167 IRI HN33 H N N 168 IRI HN41 H N N 169 IRI HN42 H N N 170 IRI HN43 H N N 171 IRI HN51 H N N 172 IRI HN52 H N N 173 IRI HN53 H N N 174 IRI HN61 H N N 175 IRI HN62 H N N 176 IRI HN63 H N N 177 MG MG MG N N 178 SPM N1 N N N 179 SPM C2 C N N 180 SPM C3 C N N 181 SPM C4 C N N 182 SPM N5 N N N 183 SPM C6 C N N 184 SPM C7 C N N 185 SPM C8 C N N 186 SPM C9 C N N 187 SPM N10 N N N 188 SPM C11 C N N 189 SPM C12 C N N 190 SPM C13 C N N 191 SPM N14 N N N 192 SPM HN11 H N N 193 SPM HN12 H N N 194 SPM H21 H N N 195 SPM H22 H N N 196 SPM H31 H N N 197 SPM H32 H N N 198 SPM H41 H N N 199 SPM H42 H N N 200 SPM HN5 H N N 201 SPM H61 H N N 202 SPM H62 H N N 203 SPM H71 H N N 204 SPM H72 H N N 205 SPM H81 H N N 206 SPM H82 H N N 207 SPM H91 H N N 208 SPM H92 H N N 209 SPM HN0 H N N 210 SPM H111 H N N 211 SPM H112 H N N 212 SPM H121 H N N 213 SPM H122 H N N 214 SPM H131 H N N 215 SPM H132 H N N 216 SPM HN41 H N N 217 SPM HN42 H N N 218 U OP3 O N N 219 U P P N N 220 U OP1 O N N 221 U OP2 O N N 222 U "O5'" O N N 223 U "C5'" C N N 224 U "C4'" C N R 225 U "O4'" O N N 226 U "C3'" C N S 227 U "O3'" O N N 228 U "C2'" C N R 229 U "O2'" O N N 230 U "C1'" C N R 231 U N1 N N N 232 U C2 C N N 233 U O2 O N N 234 U N3 N N N 235 U C4 C N N 236 U O4 O N N 237 U C5 C N N 238 U C6 C N N 239 U HOP3 H N N 240 U HOP2 H N N 241 U "H5'" H N N 242 U "H5''" H N N 243 U "H4'" H N N 244 U "H3'" H N N 245 U "HO3'" H N N 246 U "H2'" H N N 247 U "HO2'" H N N 248 U "H1'" H N N 249 U H3 H N N 250 U H5 H N N 251 U H6 H N N 252 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A23 PC O1C doub N N 40 A23 PC O2C sing N N 41 A23 PC "O3'" sing N N 42 A23 PC "O2'" sing N N 43 A23 O2C HOC2 sing N N 44 A23 P OP1 doub N N 45 A23 P OP2 sing N N 46 A23 P OP3 sing N N 47 A23 P "O5'" sing N N 48 A23 OP2 HOP2 sing N N 49 A23 OP3 HOP3 sing N N 50 A23 "O5'" "C5'" sing N N 51 A23 "C5'" "C4'" sing N N 52 A23 "C5'" "H5'" sing N N 53 A23 "C5'" "H5''" sing N N 54 A23 "C4'" "O4'" sing N N 55 A23 "C4'" "C3'" sing N N 56 A23 "C4'" "H4'" sing N N 57 A23 "O4'" "C1'" sing N N 58 A23 "C3'" "O3'" sing N N 59 A23 "C3'" "C2'" sing N N 60 A23 "C3'" "H3'" sing N N 61 A23 "C2'" "O2'" sing N N 62 A23 "C2'" "C1'" sing N N 63 A23 "C2'" "H2'" sing N N 64 A23 "C1'" N9 sing N N 65 A23 "C1'" "H1'" sing N N 66 A23 N9 C8 sing Y N 67 A23 N9 C4 sing Y N 68 A23 C8 N7 doub Y N 69 A23 C8 H8 sing N N 70 A23 N7 C5 sing Y N 71 A23 C5 C6 sing Y N 72 A23 C5 C4 doub Y N 73 A23 C6 N6 sing N N 74 A23 C6 N1 doub Y N 75 A23 N6 HN61 sing N N 76 A23 N6 HN62 sing N N 77 A23 N1 C2 sing Y N 78 A23 C2 N3 doub Y N 79 A23 C2 H2 sing N N 80 A23 N3 C4 sing Y N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 HOH O H1 sing N N 158 HOH O H2 sing N N 159 IRI IR N1 sing N N 160 IRI IR N2 sing N N 161 IRI IR N3 sing N N 162 IRI IR N4 sing N N 163 IRI IR N5 sing N N 164 IRI IR N6 sing N N 165 IRI N1 HN11 sing N N 166 IRI N1 HN12 sing N N 167 IRI N1 HN13 sing N N 168 IRI N2 HN21 sing N N 169 IRI N2 HN22 sing N N 170 IRI N2 HN23 sing N N 171 IRI N3 HN31 sing N N 172 IRI N3 HN32 sing N N 173 IRI N3 HN33 sing N N 174 IRI N4 HN41 sing N N 175 IRI N4 HN42 sing N N 176 IRI N4 HN43 sing N N 177 IRI N5 HN51 sing N N 178 IRI N5 HN52 sing N N 179 IRI N5 HN53 sing N N 180 IRI N6 HN61 sing N N 181 IRI N6 HN62 sing N N 182 IRI N6 HN63 sing N N 183 SPM N1 C2 sing N N 184 SPM N1 HN11 sing N N 185 SPM N1 HN12 sing N N 186 SPM C2 C3 sing N N 187 SPM C2 H21 sing N N 188 SPM C2 H22 sing N N 189 SPM C3 C4 sing N N 190 SPM C3 H31 sing N N 191 SPM C3 H32 sing N N 192 SPM C4 N5 sing N N 193 SPM C4 H41 sing N N 194 SPM C4 H42 sing N N 195 SPM N5 C6 sing N N 196 SPM N5 HN5 sing N N 197 SPM C6 C7 sing N N 198 SPM C6 H61 sing N N 199 SPM C6 H62 sing N N 200 SPM C7 C8 sing N N 201 SPM C7 H71 sing N N 202 SPM C7 H72 sing N N 203 SPM C8 C9 sing N N 204 SPM C8 H81 sing N N 205 SPM C8 H82 sing N N 206 SPM C9 N10 sing N N 207 SPM C9 H91 sing N N 208 SPM C9 H92 sing N N 209 SPM N10 C11 sing N N 210 SPM N10 HN0 sing N N 211 SPM C11 C12 sing N N 212 SPM C11 H111 sing N N 213 SPM C11 H112 sing N N 214 SPM C12 C13 sing N N 215 SPM C12 H121 sing N N 216 SPM C12 H122 sing N N 217 SPM C13 N14 sing N N 218 SPM C13 H131 sing N N 219 SPM C13 H132 sing N N 220 SPM N14 HN41 sing N N 221 SPM N14 HN42 sing N N 222 U OP3 P sing N N 223 U OP3 HOP3 sing N N 224 U P OP1 doub N N 225 U P OP2 sing N N 226 U P "O5'" sing N N 227 U OP2 HOP2 sing N N 228 U "O5'" "C5'" sing N N 229 U "C5'" "C4'" sing N N 230 U "C5'" "H5'" sing N N 231 U "C5'" "H5''" sing N N 232 U "C4'" "O4'" sing N N 233 U "C4'" "C3'" sing N N 234 U "C4'" "H4'" sing N N 235 U "O4'" "C1'" sing N N 236 U "C3'" "O3'" sing N N 237 U "C3'" "C2'" sing N N 238 U "C3'" "H3'" sing N N 239 U "O3'" "HO3'" sing N N 240 U "C2'" "O2'" sing N N 241 U "C2'" "C1'" sing N N 242 U "C2'" "H2'" sing N N 243 U "O2'" "HO2'" sing N N 244 U "C1'" N1 sing N N 245 U "C1'" "H1'" sing N N 246 U N1 C2 sing N N 247 U N1 C6 sing N N 248 U C2 O2 doub N N 249 U C2 N3 sing N N 250 U N3 C4 sing N N 251 U N3 H3 sing N N 252 U C4 O4 doub N N 253 U C4 C5 sing N N 254 U C5 C6 doub N N 255 U C5 H5 sing N N 256 U C6 H6 sing N N 257 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4P5J 'double helix' 4P5J 'a-form double helix' 4P5J 'parallel strands' 4P5J 'hairpin loop' 4P5J 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 4 1_555 A C 76 1_555 0.047 -0.167 -0.454 -7.577 -5.705 -1.992 1 A_G2:C74_A A 2 ? A 74 ? 19 1 1 A C 34 1_555 A U 28 1_555 1.425 -4.552 -0.509 20.267 -11.904 159.736 2 A_C32:U26_A A 32 ? A 26 ? ? ? 1 A G 35 1_555 A C 27 1_555 -0.544 -0.175 0.290 -4.082 -10.801 3.451 3 A_G33:C25_A A 33 ? A 25 ? 19 1 1 A A 36 1_555 A U 26 1_555 -0.335 -0.198 0.206 4.091 -10.690 1.044 4 A_A34:U24_A A 34 ? A 24 ? 20 1 1 A C 37 1_555 A G 25 1_555 0.630 -0.310 0.097 4.442 -11.608 -1.403 5 A_C35:G23_A A 35 ? A 23 ? 19 1 1 A A 38 1_555 A U 24 1_555 -0.001 -0.260 0.127 3.564 -12.961 -0.447 6 A_A36:U22_A A 36 ? A 22 ? 20 1 1 A G 39 1_555 A C 23 1_555 -0.357 -0.375 0.126 -1.738 -13.814 -3.293 7 A_G37:C21_A A 37 ? A 21 ? 19 1 1 A A 40 1_555 A U 22 1_555 0.040 -0.109 -0.027 -8.553 -18.129 -0.715 8 A_A38:U20_A A 38 ? A 20 ? 20 1 1 A U 41 1_555 A G 21 1_555 2.214 -0.628 0.128 1.016 -12.385 -4.210 9 A_U39:G19_A A 39 ? A 19 ? 28 1 1 A C 5 1_555 A G 20 1_555 0.107 -0.179 0.121 -5.815 -10.421 0.997 10 A_C3:G18_A A 3 ? A 18 ? 19 1 1 A U 6 1_555 A A 19 1_555 0.126 -0.148 0.181 -8.591 -8.080 1.543 11 A_U4:A17_A A 4 ? A 17 ? 20 1 1 A C 7 1_555 A G 18 1_555 0.238 -0.114 0.060 1.358 -10.509 -0.333 12 A_C5:G16_A A 5 ? A 16 ? 19 1 1 A G 8 1_555 A C 17 1_555 -0.145 -0.117 0.189 1.396 -8.745 -0.930 13 A_G6:C15_A A 6 ? A 15 ? 19 1 1 A C 9 1_555 A G 16 1_555 0.220 -0.209 0.057 7.866 -9.586 -0.066 14 A_C7:G14_A A 7 ? A 14 ? 19 1 1 A C 10 1_555 A C 54 1_555 1.714 1.536 0.141 13.023 36.275 178.881 15 A_C8:C52_A A 8 ? A 52 ? 15 2 1 A A 11 1_555 A G 50 1_555 -6.824 -4.451 0.252 -18.919 11.398 -3.130 16 A_A9:G48_A A 9 ? A 48 ? 11 10 1 A A 53 1_555 A U 49 1_555 -4.111 -1.972 0.237 -1.412 1.528 -99.833 17 A_A51:U47_A A 51 ? A 47 ? 24 4 1 A C 56 1_555 A G 48 1_555 0.208 -0.213 0.149 5.993 -10.333 1.029 18 A_C54:G46_A A 54 ? A 46 ? 19 1 1 A C 57 1_555 A G 47 1_555 0.006 -0.082 -0.101 6.301 -12.443 -0.242 19 A_C55:G45_A A 55 ? A 45 ? 19 1 1 A C 58 1_555 A G 46 1_555 0.347 -0.134 0.106 4.102 -8.539 0.079 20 A_C56:G44_A A 56 ? A 44 ? 19 1 1 A G 59 1_555 A C 45 1_555 -0.119 -0.078 -0.129 0.185 -7.899 -2.062 21 A_G57:C43_A A 57 ? A 43 ? 19 1 1 A C 60 1_555 A G 74 1_555 0.287 -0.175 0.060 9.026 -7.634 -4.008 22 A_C58:G72_A A 58 ? A 72 ? 19 1 1 A C 61 1_555 A G 73 1_555 0.251 -0.260 0.295 5.047 -22.420 2.019 23 A_C59:G71_A A 59 ? A 71 ? 19 1 1 A C 62 1_555 A G 72 1_555 0.280 -0.158 0.454 -5.996 -12.674 -2.478 24 A_C60:G70_A A 60 ? A 70 ? 19 1 1 A U 78 1_555 A A 71 1_555 -0.004 -0.215 0.190 -7.351 -0.087 8.204 25 A_U76:A69_A A 76 ? A 69 ? 20 1 1 A C 79 1_555 A G 70 1_555 0.210 -0.157 0.058 1.397 -14.115 -0.649 26 A_C77:G68_A A 77 ? A 68 ? 19 1 1 A G 80 1_555 A C 69 1_555 -0.312 -0.170 0.341 0.546 -12.071 2.152 27 A_G78:C67_A A 78 ? A 67 ? 19 1 1 A G 81 1_555 A C 68 1_555 0.027 -0.197 0.158 2.602 -14.544 -1.896 28 A_G79:C66_A A 79 ? A 66 ? 19 1 1 A A 82 1_555 A U 67 1_555 -0.089 -0.139 -0.026 -3.422 -21.936 0.229 29 A_A80:U65_A A 80 ? A 65 ? 20 1 1 A A 83 1_555 A U 66 1_555 0.075 -0.043 0.294 -7.895 -10.081 2.229 30 A_A81:U64_A A 81 ? A 64 ? 20 1 1 A C 85 1_555 A C 65 1_555 -2.033 -1.234 -0.341 -7.828 -6.595 -177.492 31 A_C83:C63_A A 83 ? A 63 ? 15 2 1 A G 12 1_555 A C 51 1_555 -0.173 -0.083 -0.135 -27.199 -20.643 0.771 32 A_G10:C49_A A 10 ? A 49 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 34 1_555 A U 28 1_555 A G 35 1_555 A C 27 1_555 0.909 -0.302 3.055 -1.786 -5.199 130.512 -0.131 -0.513 3.054 -2.862 0.983 130.572 1 AA_C32G33:C25U26_AA A 32 ? A 26 ? A 33 ? A 25 ? 1 A G 35 1_555 A C 27 1_555 A A 36 1_555 A U 26 1_555 -0.289 -1.130 3.045 -2.351 2.355 33.859 -2.278 0.149 2.975 4.032 4.024 34.018 2 AA_G33A34:U24C25_AA A 33 ? A 25 ? A 34 ? A 24 ? 1 A A 36 1_555 A U 26 1_555 A C 37 1_555 A G 25 1_555 -0.004 -1.592 3.234 0.030 6.129 35.498 -3.402 0.011 2.928 9.960 -0.049 36.007 3 AA_A34C35:G23U24_AA A 34 ? A 24 ? A 35 ? A 23 ? 1 A C 37 1_555 A G 25 1_555 A A 38 1_555 A U 24 1_555 -0.121 -1.665 3.114 -0.641 11.475 27.319 -5.335 0.122 2.248 23.045 1.287 29.596 4 AA_C35A36:U22G23_AA A 35 ? A 23 ? A 36 ? A 22 ? 1 A A 38 1_555 A U 24 1_555 A G 39 1_555 A C 23 1_555 -0.294 -1.427 3.251 -1.264 9.129 33.136 -3.758 0.312 2.780 15.634 2.165 34.359 5 AA_A36G37:C21U22_AA A 36 ? A 22 ? A 37 ? A 21 ? 1 A G 39 1_555 A C 23 1_555 A A 40 1_555 A U 22 1_555 0.410 -1.231 3.425 2.902 6.874 34.500 -3.069 -0.239 3.153 11.425 -4.823 35.273 6 AA_G37A38:U20C21_AA A 37 ? A 21 ? A 38 ? A 20 ? 1 A A 40 1_555 A U 22 1_555 A U 41 1_555 A G 21 1_555 0.051 -1.290 3.001 2.358 7.255 39.085 -2.638 0.166 2.727 10.720 -3.484 39.794 7 AA_A38U39:G19U20_AA A 38 ? A 20 ? A 39 ? A 19 ? 1 A U 41 1_555 A G 21 1_555 A C 5 1_555 A G 20 1_555 -2.106 -1.211 3.175 0.279 7.642 48.382 -2.007 2.562 2.951 9.257 -0.338 48.947 8 AA_U39C3:G18G19_AA A 39 ? A 19 ? A 3 ? A 18 ? 1 A C 5 1_555 A G 20 1_555 A U 6 1_555 A A 19 1_555 -0.445 -1.549 3.233 0.164 8.125 29.849 -4.366 0.864 2.724 15.417 -0.312 30.911 9 AA_C3U4:A17G18_AA A 3 ? A 18 ? A 4 ? A 17 ? 1 A U 6 1_555 A A 19 1_555 A C 7 1_555 A G 18 1_555 0.078 -1.543 3.044 2.212 1.706 29.101 -3.398 0.285 2.948 3.385 -4.389 29.232 10 AA_U4C5:G16A17_AA A 4 ? A 17 ? A 5 ? A 16 ? 1 A C 7 1_555 A G 18 1_555 A G 8 1_555 A C 17 1_555 0.153 -1.610 3.149 -0.291 8.899 30.164 -4.464 -0.332 2.579 16.650 0.544 31.422 11 AA_C5G6:C15G16_AA A 5 ? A 16 ? A 6 ? A 15 ? 1 A G 8 1_555 A C 17 1_555 A C 9 1_555 A G 16 1_555 0.458 -1.432 3.190 1.836 -0.491 33.592 -2.395 -0.498 3.230 -0.849 -3.173 33.644 12 AA_G6C7:G14C15_AA A 6 ? A 15 ? A 7 ? A 14 ? 1 A C 9 1_555 A G 16 1_555 A C 10 1_555 A C 54 1_555 0.602 -1.434 2.619 -4.812 -4.745 -57.381 1.686 0.419 2.542 4.923 -4.993 -57.744 13 AA_C7C8:C52G14_AA A 7 ? A 14 ? A 8 ? A 52 ? 1 A A 11 1_555 A G 50 1_555 A A 53 1_555 A U 49 1_555 -2.013 -0.134 2.902 -6.725 0.926 -2.173 -0.449 -27.277 -0.996 -9.863 -71.595 -7.127 14 AA_A9A51:U47G48_AA A 9 ? A 48 ? A 51 ? A 47 ? 1 A A 53 1_555 A U 49 1_555 A C 56 1_555 A G 48 1_555 1.873 -2.124 3.091 -3.371 3.794 89.246 -1.583 -1.396 2.961 2.699 2.398 89.360 15 AA_A51C54:G46U47_AA A 51 ? A 47 ? A 54 ? A 46 ? 1 A C 56 1_555 A G 48 1_555 A C 57 1_555 A G 47 1_555 -0.649 -2.083 3.111 -1.065 4.273 31.920 -4.449 0.996 2.835 7.723 1.925 32.214 16 AA_C54C55:G45G46_AA A 54 ? A 46 ? A 55 ? A 45 ? 1 A C 57 1_555 A G 47 1_555 A C 58 1_555 A G 46 1_555 -0.434 -1.824 3.313 -2.910 4.719 30.643 -4.281 0.264 3.032 8.838 5.450 31.129 17 AA_C55C56:G44G45_AA A 55 ? A 45 ? A 56 ? A 44 ? 1 A C 58 1_555 A G 46 1_555 A G 59 1_555 A C 45 1_555 0.176 -1.808 3.362 -0.495 5.515 31.740 -4.225 -0.404 3.010 9.989 0.896 32.207 18 AA_C56G57:C43G44_AA A 56 ? A 44 ? A 57 ? A 43 ? 1 A G 59 1_555 A C 45 1_555 A C 60 1_555 A G 74 1_555 0.272 -1.284 3.020 -2.943 0.493 39.195 -1.962 -0.726 2.977 0.734 4.379 39.303 19 AA_G57C58:G72C43_AA A 57 ? A 43 ? A 58 ? A 72 ? 1 A C 60 1_555 A G 74 1_555 A C 61 1_555 A G 73 1_555 1.000 -1.214 3.115 1.177 10.151 36.777 -3.028 -1.395 2.727 15.719 -1.823 38.123 20 AA_C58C59:G71G72_AA A 58 ? A 72 ? A 59 ? A 71 ? 1 A C 61 1_555 A G 73 1_555 A C 62 1_555 A G 72 1_555 -0.032 -1.717 3.329 1.273 7.604 35.507 -3.781 0.222 2.909 12.291 -2.057 36.308 21 AA_C59C60:G70G71_AA A 59 ? A 71 ? A 60 ? A 70 ? 1 A C 62 1_555 A G 72 1_555 A U 78 1_555 A A 71 1_555 -0.737 -2.949 2.855 2.874 12.376 34.396 -5.911 1.456 1.665 20.098 -4.668 36.601 22 AA_C60U76:A69G70_AA A 60 ? A 70 ? A 76 ? A 69 ? 1 A U 78 1_555 A A 71 1_555 A C 79 1_555 A G 70 1_555 -0.873 -0.895 3.070 -2.390 -4.557 28.854 -0.815 1.225 3.230 -9.055 4.748 29.300 23 AA_U76C77:G68A69_AA A 76 ? A 69 ? A 77 ? A 68 ? 1 A C 79 1_555 A G 70 1_555 A G 80 1_555 A C 69 1_555 -0.265 -1.885 3.013 -2.918 12.914 27.876 -5.575 0.041 1.983 25.092 5.670 30.804 24 AA_C77G78:C67G68_AA A 77 ? A 68 ? A 78 ? A 67 ? 1 A G 80 1_555 A C 69 1_555 A G 81 1_555 A C 68 1_555 -0.356 -1.221 3.125 -0.317 7.962 34.849 -3.045 0.538 2.791 13.084 0.521 35.720 25 AA_G78G79:C66C67_AA A 78 ? A 67 ? A 79 ? A 66 ? 1 A G 81 1_555 A C 68 1_555 A A 82 1_555 A U 67 1_555 0.144 -1.098 3.377 3.016 5.486 34.622 -2.644 0.215 3.173 9.126 -5.016 35.167 26 AA_G79A80:U65C66_AA A 79 ? A 66 ? A 80 ? A 65 ? 1 A A 82 1_555 A U 67 1_555 A A 83 1_555 A U 66 1_555 0.956 -0.839 3.313 4.814 1.367 31.748 -1.767 -0.840 3.379 2.480 -8.732 32.130 27 AA_A80A81:U64U65_AA A 80 ? A 65 ? A 81 ? A 64 ? 1 A A 83 1_555 A U 66 1_555 A C 85 1_555 A C 65 1_555 6.554 -2.690 -0.672 -87.609 -128.191 -95.580 1.328 3.332 0.477 66.690 -45.578 -163.456 28 AA_A81C83:C63U64_AA A 81 ? A 64 ? A 83 ? A 63 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' . 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' P30CA046934 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM081346 3 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM097333 4 'Department of Energy (DOE, United States)' 'United States' DE-AC02-05CH11231 5 # _atom_sites.entry_id 4P5J _atom_sites.fract_transf_matrix[1][1] 0.018093 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009845 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008960 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C IR MG N O P # loop_