HEADER HYDROLASE 21-MAR-14 4P62 TITLE DIRECTED EVOLUTION OF A B3 METALLO-BETA-LACTAMASE AIM-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE AIM-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAAIM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLO-BETA-LACTAMASE, ANTIBIOTIC RESISTANCE, DIRECTED EVOLUTION, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-F.D.HOU,C.COLLYER,D.L.OLLIS REVDAT 1 27-MAY-15 4P62 0 JRNL AUTH C.-F.D.HOU,C.COLLYER,D.L.OLLIS JRNL TITL DIRECTED EVOLUTION OF A B3 METALLO-BETA-LACTAMASE AIM-1 JRNL REF TO BE PUBLISHED REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1726 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2243 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -1.16000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2080 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1934 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2854 ; 1.812 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4440 ; 0.933 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 6.354 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;29.998 ;23.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 295 ;13.747 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;22.636 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2428 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 469 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1086 ; 1.549 ; 1.658 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1085 ; 1.545 ; 1.656 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1359 ; 2.251 ; 2.474 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1360 ; 2.250 ; 2.476 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 994 ; 2.369 ; 1.877 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 994 ; 2.369 ; 1.877 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1493 ; 3.622 ; 2.711 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2509 ; 5.413 ;14.089 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2409 ; 5.329 ;13.829 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4P62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.89 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34233 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 44.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, ZINC ACETATE, SODIUM REMARK 280 CACODYLATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.09000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 160.18000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.13500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 200.22500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.04500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.09000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 160.18000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 200.22500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 120.13500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.04500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -232.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.04500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 PHE A 5 REMARK 465 THR A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 VAL A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 THR A 19 REMARK 465 ALA A 20 REMARK 465 LEU A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 ASP A 24 REMARK 465 ALA A 25 REMARK 465 PRO A 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 243 O HOH A 584 1.62 REMARK 500 OD2 ASP A 140 O HOH A 582 1.73 REMARK 500 ND2 ASN A 38 O HOH A 401 1.98 REMARK 500 O ASP A 163 O HOH A 593 2.01 REMARK 500 O1 EDO A 304 O HOH A 402 2.06 REMARK 500 CB ALA A 295 O HOH A 595 2.06 REMARK 500 CB ILE A 211 O HOH A 586 2.14 REMARK 500 OD2 ASP A 220 O HOH A 583 2.19 REMARK 500 CG1 ILE A 211 O HOH A 586 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 402 O HOH A 402 12555 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 141 CD ARG A 141 NE -0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 141 NE - CZ - NH2 ANGL. DEV. = -10.3 DEGREES REMARK 500 ASP A 163 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 200 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ILE A 211 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 CYS A 243 CA - CB - SG ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 259 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 259 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 263 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 275 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 46 -61.49 -91.16 REMARK 500 ASP A 73 166.11 79.46 REMARK 500 ALA A 75 -145.08 50.58 REMARK 500 GLU A 105 30.73 -82.78 REMARK 500 HIS A 224 77.58 -164.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 594 DISTANCE = 6.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 104 NE2 REMARK 620 2 HIS A 106 ND1 100.9 REMARK 620 3 HIS A 182 NE2 102.3 104.1 REMARK 620 4 HOH A 581 O 112.8 112.2 122.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD2 REMARK 620 2 HIS A 109 NE2 95.8 REMARK 620 3 HIS A 250 NE2 95.9 107.1 REMARK 620 4 HOH A 581 O 98.3 113.8 134.8 REMARK 620 5 HOH A 605 O 163.5 99.5 85.4 69.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 242 OD1 REMARK 620 2 HOH A 408 O 84.2 REMARK 620 3 HOH A 424 O 91.0 175.2 REMARK 620 4 HOH A 408 O 91.2 84.7 95.7 REMARK 620 5 HOH A 402 O 173.0 95.3 89.5 81.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 DBREF 4P62 A 1 294 UNP B5DCA0 B5DCA0_PSEAI 1 294 SEQADV 4P62 GLN A 44 UNP B5DCA0 LEU 44 ENGINEERED MUTATION SEQADV 4P62 LEU A 102 UNP B5DCA0 PHE 102 ENGINEERED MUTATION SEQADV 4P62 TYR A 216 UNP B5DCA0 PHE 216 ENGINEERED MUTATION SEQADV 4P62 ALA A 295 UNP B5DCA0 EXPRESSION TAG SEQRES 1 A 295 MET LYS ARG ARG PHE THR LEU LEU GLY SER VAL VAL ALA SEQRES 2 A 295 LEU ALA LEU SER SER THR ALA LEU ALA SER ASP ALA PRO SEQRES 3 A 295 ALA SER ARG GLY CYS ALA ASP ASP ALA GLY TRP ASN ASP SEQRES 4 A 295 PRO ALA MET PRO GLN LYS VAL TYR GLY ASN THR TRP TYR SEQRES 5 A 295 VAL GLY THR CYS GLY ILE SER ALA LEU LEU VAL THR SER SEQRES 6 A 295 ASP ALA GLY HIS ILE LEU VAL ASP ALA ALA THR PRO GLN SEQRES 7 A 295 ALA GLY PRO GLN ILE LEU ALA ASN ILE ARG ALA LEU GLY SEQRES 8 A 295 PHE ARG PRO GLU ASP VAL ARG ALA ILE VAL LEU SER HIS SEQRES 9 A 295 GLU HIS PHE ASP HIS ALA GLY SER LEU ALA GLU LEU GLN SEQRES 10 A 295 LYS ALA THR GLY ALA PRO VAL TYR ALA ARG ALA PRO ALA SEQRES 11 A 295 ILE ASP THR LEU LYS ARG GLY LEU PRO ASP ARG THR ASP SEQRES 12 A 295 PRO GLN PHE GLU VAL ALA GLU PRO VAL ALA PRO VAL ALA SEQRES 13 A 295 ASN ILE VAL THR LEU ALA ASP ASP GLY VAL VAL SER VAL SEQRES 14 A 295 GLY PRO LEU ALA LEU THR ALA VAL ALA SER PRO GLY HIS SEQRES 15 A 295 THR PRO GLY GLY THR SER TRP THR TRP ARG SER CYS GLU SEQRES 16 A 295 GLY ASP ASP CYS ARG GLN MET VAL TYR ALA ASP SER LEU SEQRES 17 A 295 THR ALA ILE SER ASP ASP VAL TYR ARG TYR SER ASP ASP SEQRES 18 A 295 ALA ALA HIS PRO GLY TYR LEU ALA ALA PHE ARG ASN THR SEQRES 19 A 295 LEU ALA ARG VAL ALA ALA LEU ASP CYS ASP ILE LEU VAL SEQRES 20 A 295 THR PRO HIS PRO SER ALA SER GLY LEU TRP ASN ARG ILE SEQRES 21 A 295 GLY PRO ARG ALA ALA ALA PRO LEU MET ASP THR THR ALA SEQRES 22 A 295 CYS ARG ARG TYR ALA GLN GLY ALA ARG GLN ARG LEU GLU SEQRES 23 A 295 LYS ARG LEU ALA GLU GLU ALA ALA ALA HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET EDO A 304 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 3(ZN 2+) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *214(H2 O) HELIX 1 AA1 ALA A 79 LEU A 90 1 12 HELIX 2 AA2 ARG A 93 GLU A 95 5 3 HELIX 3 AA3 HIS A 106 GLY A 111 1 6 HELIX 4 AA4 SER A 112 GLY A 121 1 10 HELIX 5 AA5 ALA A 130 GLY A 137 1 8 HELIX 6 AA6 GLN A 145 ALA A 149 5 5 HELIX 7 AA7 ASP A 220 HIS A 224 5 5 HELIX 8 AA8 GLY A 226 ALA A 240 1 15 HELIX 9 AA9 HIS A 250 ARG A 259 5 10 HELIX 10 AB1 THR A 272 ALA A 295 1 24 SHEET 1 AA1 7 GLN A 44 TYR A 47 0 SHEET 2 AA1 7 THR A 50 TYR A 52 -1 O TYR A 52 N GLN A 44 SHEET 3 AA1 7 LEU A 61 VAL A 63 -1 O LEU A 62 N TRP A 51 SHEET 4 AA1 7 HIS A 69 VAL A 72 -1 O VAL A 72 N LEU A 61 SHEET 5 AA1 7 VAL A 97 VAL A 101 1 O ARG A 98 N HIS A 69 SHEET 6 AA1 7 VAL A 124 ARG A 127 1 O TYR A 125 N ILE A 100 SHEET 7 AA1 7 ILE A 158 LEU A 161 1 O VAL A 159 N VAL A 124 SHEET 1 AA2 5 VAL A 166 VAL A 169 0 SHEET 2 AA2 5 LEU A 172 ALA A 178 -1 O LEU A 174 N VAL A 167 SHEET 3 AA2 5 THR A 187 GLU A 195 -1 O SER A 188 N VAL A 177 SHEET 4 AA2 5 ASP A 198 TYR A 204 -1 O MET A 202 N TRP A 191 SHEET 5 AA2 5 ILE A 245 VAL A 247 1 O ILE A 245 N VAL A 203 SSBOND 1 CYS A 31 CYS A 56 1555 1555 2.07 SSBOND 2 CYS A 194 CYS A 199 1555 1555 2.11 SSBOND 3 CYS A 243 CYS A 274 1555 1555 2.14 LINK NE2 HIS A 104 ZN ZN A 301 1555 1555 2.04 LINK ND1 HIS A 106 ZN ZN A 301 1555 1555 2.06 LINK OD2 ASP A 108 ZN ZN A 302 1555 1555 2.04 LINK NE2 HIS A 109 ZN ZN A 302 1555 1555 2.07 LINK NE2 HIS A 182 ZN ZN A 301 1555 1555 2.12 LINK OD1 ASP A 242 ZN ZN A 303 1555 1555 2.29 LINK NE2 HIS A 250 ZN ZN A 302 1555 1555 1.97 LINK ZN ZN A 301 O HOH A 581 1555 1555 1.94 LINK ZN ZN A 302 O HOH A 581 1555 1555 1.94 LINK ZN ZN A 302 O HOH A 605 1555 1555 2.47 LINK ZN ZN A 303 O HOH A 408 1555 1555 2.37 LINK ZN ZN A 303 O HOH A 424 1555 12555 2.14 LINK ZN ZN A 303 O HOH A 408 1555 12555 1.95 LINK ZN ZN A 303 O HOH A 402 1555 12555 2.62 SITE 1 AC1 6 HIS A 104 HIS A 106 HIS A 182 ZN A 302 SITE 2 AC1 6 HOH A 581 HOH A 605 SITE 1 AC2 6 ASP A 108 HIS A 109 HIS A 250 ZN A 301 SITE 2 AC2 6 HOH A 581 HOH A 605 SITE 1 AC3 6 ASP A 242 ASP A 244 EDO A 304 HOH A 402 SITE 2 AC3 6 HOH A 408 HOH A 424 SITE 1 AC4 8 ASP A 198 CYS A 199 ASP A 244 THR A 271 SITE 2 AC4 8 ZN A 303 HOH A 402 HOH A 408 HOH A 424 CRYST1 76.453 76.453 240.270 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013080 0.007552 0.000000 0.00000 SCALE2 0.000000 0.015103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004162 0.00000