HEADER HYDROLASE 24-MAR-14 4P6B TITLE CRYSTAL STRUCTURE OF EST-Y29,A NOVEL PENICILLIN-BINDING PROTEIN/BETA- TITLE 2 LACTAMASE HOMOLOG FROM A METAGENOMIC LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: EST-Y29; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METAGENOME; SOURCE 3 ORGANISM_TAXID: 256318; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: XL1-BLUE KEYWDS HYDROLASE, PENICILLIN-BINDING PROTEIN, BETA-LACTAMASE, METAGENOME EXPDTA X-RAY DIFFRACTION AUTHOR T.D.NGO,B.H.RYU,H.S.JU,E.J.JANG,K.K.KIM,D.H.KIM REVDAT 5 27-DEC-23 4P6B 1 REMARK REVDAT 4 22-NOV-17 4P6B 1 SOURCE REMARK REVDAT 3 17-DEC-14 4P6B 1 DBREF REVDAT 2 24-SEP-14 4P6B 1 JRNL REVDAT 1 10-SEP-14 4P6B 0 JRNL AUTH T.D.NGO,B.H.RYU,H.JU,E.J.JANG,K.K.KIM,T.D.KIM JRNL TITL CRYSTALLOGRAPHIC ANALYSIS AND BIOCHEMICAL APPLICATIONS OF A JRNL TITL 2 NOVEL PENICILLIN-BINDING PROTEIN/ BETA-LACTAMASE HOMOLOGUE JRNL TITL 3 FROM A METAGENOMIC LIBRARY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2455 2014 JRNL REFN ESSN 1399-0047 JRNL PMID 25195758 JRNL DOI 10.1107/S1399004714015272 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 115954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6122 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8557 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 453 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5938 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 898 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.376 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6089 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8273 ; 1.253 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 765 ; 5.608 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;34.753 ;23.708 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 967 ;12.609 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;20.746 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 910 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4673 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3821 ; 0.640 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6134 ; 1.208 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2268 ; 1.986 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2139 ; 3.217 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4P6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000, 0.97888, 0.97917, REMARK 200 0.96395 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 122542 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M SODIUM FORMATE, 0.1 M SODIUM REMARK 280 ACETATE TRIHYDRATE BUFFER (PH 4.6), EVAPORATION, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.77050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.77050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.58650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.77050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.77050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.58650 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 60.77050 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 60.77050 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 77.58650 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 60.77050 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 60.77050 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 77.58650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 106780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 121.54100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 121.54100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 121.54100 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 121.54100 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 225 REMARK 465 SER A 226 REMARK 465 LEU A 227 REMARK 465 HIS A 228 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 SER B 226 REMARK 465 LEU B 227 REMARK 465 HIS B 228 REMARK 465 GLY B 389 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 224 CG SD CE REMARK 470 MET B 224 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LEU B 388 O HOH B 421 1.95 REMARK 500 OD1 ASP B 202 NE2 GLN B 204 2.07 REMARK 500 O GLY B 262 O HOH B 680 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 472 O HOH B 467 3655 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 151 CG - SD - CE ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG B 146 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 146 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 57 -125.28 45.59 REMARK 500 SER A 122 -149.88 -123.19 REMARK 500 ILE A 197 -58.58 -123.11 REMARK 500 ASP A 252 37.69 -140.13 REMARK 500 SER A 279 -24.46 -140.22 REMARK 500 ARG A 307 -31.48 86.99 REMARK 500 ASN A 322 -168.32 -115.58 REMARK 500 TYR B 57 -125.76 46.89 REMARK 500 SER B 122 -150.99 -125.22 REMARK 500 ILE B 197 -56.58 -123.39 REMARK 500 HIS B 249 59.82 -146.24 REMARK 500 ASP B 252 43.96 -140.48 REMARK 500 SER B 279 -24.17 -140.26 REMARK 500 ASN B 322 -169.97 -114.24 REMARK 500 ALA B 350 12.84 80.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 4P6B A 0 389 PDB 4P6B 4P6B 0 389 DBREF 4P6B B 0 389 PDB 4P6B 4P6B 0 389 SEQRES 1 A 390 SER MET PRO ASP LEU LEU THR ASN VAL ALA GLU ASN TYR SEQRES 2 A 390 VAL ASN GLN ASP LEU PHE ALA GLY ILE GLU TRP ARG ILE SEQRES 3 A 390 ASP GLN ASP GLY LYS PRO ILE PHE GLN GLY CYS ALA GLY SEQRES 4 A 390 VAL LYS ASP ILE GLU THR ARG THR PHE ILE PRO LYS ASN SEQRES 5 A 390 ALA ILE TYR ARG ILE TYR SER MET THR LYS PRO ILE VAL SEQRES 6 A 390 SER PHE LEU ALA MET MET LEU ILE GLU ARG GLY VAL PHE SEQRES 7 A 390 ARG LEU SER SER PRO ILE GLN ASN PHE ASP PRO ARG PHE SEQRES 8 A 390 LYS SER MET LYS VAL ILE ASP GLN HIS ALA HIS ILE GLU SEQRES 9 A 390 PRO ALA THR ALA LEU ILE THR ILE GLU HIS LEU LEU THR SEQRES 10 A 390 HIS GLN ALA GLY PHE SER TYR ASP PHE SER LEU GLY CYS SEQRES 11 A 390 PRO ILE SER ALA HIS TYR ARG ASP ALA GLN LEU ILE GLU SEQRES 12 A 390 ASP GLY GLY ARG ASP LEU THR ASP MET MET GLY VAL LEU SEQRES 13 A 390 ALA GLU LEU PRO LEU VAL PHE HIS PRO GLY THR GLN TRP SEQRES 14 A 390 LYS TYR SER ILE SER THR ASP VAL LEU ALA HIS ILE ILE SEQRES 15 A 390 GLU CYS ALA THR GLY GLU ARG VAL ASP ASP LEU LEU GLN SEQRES 16 A 390 ARG LEU ILE PHE ASP PRO LEU ASP MET GLN ASP THR GLY SEQRES 17 A 390 PHE SER LEU PRO LEU ASP GLY ALA SER ARG LEU MET GLU SEQRES 18 A 390 VAL TYR GLY MET ARG SER LEU HIS GLY LEU PRO ALA LEU SEQRES 19 A 390 LYS PRO ALA PRO HIS VAL LEU VAL PRO ALA ASP LEU GLY SEQRES 20 A 390 SER SER HIS PRO THR ASP ASP PRO ASP PHE ARG ARG GLY SEQRES 21 A 390 GLY HIS GLY LEU TYR SER THR LEU ASP ASP TYR MET ALA SEQRES 22 A 390 PHE ALA ASN MET LEU LEU SER GLY GLN THR PRO GLU GLY SEQRES 23 A 390 GLU THR LEU LEU SER PRO ALA VAL LEU LYS LEU ALA LEU SEQRES 24 A 390 ALA PRO ARG VAL HIS PHE GLY ALA ARG GLY MET ARG ILE SEQRES 25 A 390 ASN ASP GLU PRO PHE ALA GLY TYR SER TRP ASN LEU LEU SEQRES 26 A 390 GLY ARG VAL MET THR ASP VAL GLY ALA ALA ALA TYR ALA SEQRES 27 A 390 THR HIS LEU GLY GLU PHE GLY TRP SER GLY ALA ALA ALA SEQRES 28 A 390 THR TYR PHE TRP VAL ASP PRO THR LYS ASN MET THR GLY SEQRES 29 A 390 CYS VAL MET THR GLN PHE LEU GLY SER GLN HIS PRO ILE SEQRES 30 A 390 GLY SER ASP MET GLN ALA ALA ALA MET SER MET LEU GLY SEQRES 1 B 390 SER MET PRO ASP LEU LEU THR ASN VAL ALA GLU ASN TYR SEQRES 2 B 390 VAL ASN GLN ASP LEU PHE ALA GLY ILE GLU TRP ARG ILE SEQRES 3 B 390 ASP GLN ASP GLY LYS PRO ILE PHE GLN GLY CYS ALA GLY SEQRES 4 B 390 VAL LYS ASP ILE GLU THR ARG THR PHE ILE PRO LYS ASN SEQRES 5 B 390 ALA ILE TYR ARG ILE TYR SER MET THR LYS PRO ILE VAL SEQRES 6 B 390 SER PHE LEU ALA MET MET LEU ILE GLU ARG GLY VAL PHE SEQRES 7 B 390 ARG LEU SER SER PRO ILE GLN ASN PHE ASP PRO ARG PHE SEQRES 8 B 390 LYS SER MET LYS VAL ILE ASP GLN HIS ALA HIS ILE GLU SEQRES 9 B 390 PRO ALA THR ALA LEU ILE THR ILE GLU HIS LEU LEU THR SEQRES 10 B 390 HIS GLN ALA GLY PHE SER TYR ASP PHE SER LEU GLY CYS SEQRES 11 B 390 PRO ILE SER ALA HIS TYR ARG ASP ALA GLN LEU ILE GLU SEQRES 12 B 390 ASP GLY GLY ARG ASP LEU THR ASP MET MET GLY VAL LEU SEQRES 13 B 390 ALA GLU LEU PRO LEU VAL PHE HIS PRO GLY THR GLN TRP SEQRES 14 B 390 LYS TYR SER ILE SER THR ASP VAL LEU ALA HIS ILE ILE SEQRES 15 B 390 GLU CYS ALA THR GLY GLU ARG VAL ASP ASP LEU LEU GLN SEQRES 16 B 390 ARG LEU ILE PHE ASP PRO LEU ASP MET GLN ASP THR GLY SEQRES 17 B 390 PHE SER LEU PRO LEU ASP GLY ALA SER ARG LEU MET GLU SEQRES 18 B 390 VAL TYR GLY MET ARG SER LEU HIS GLY LEU PRO ALA LEU SEQRES 19 B 390 LYS PRO ALA PRO HIS VAL LEU VAL PRO ALA ASP LEU GLY SEQRES 20 B 390 SER SER HIS PRO THR ASP ASP PRO ASP PHE ARG ARG GLY SEQRES 21 B 390 GLY HIS GLY LEU TYR SER THR LEU ASP ASP TYR MET ALA SEQRES 22 B 390 PHE ALA ASN MET LEU LEU SER GLY GLN THR PRO GLU GLY SEQRES 23 B 390 GLU THR LEU LEU SER PRO ALA VAL LEU LYS LEU ALA LEU SEQRES 24 B 390 ALA PRO ARG VAL HIS PHE GLY ALA ARG GLY MET ARG ILE SEQRES 25 B 390 ASN ASP GLU PRO PHE ALA GLY TYR SER TRP ASN LEU LEU SEQRES 26 B 390 GLY ARG VAL MET THR ASP VAL GLY ALA ALA ALA TYR ALA SEQRES 27 B 390 THR HIS LEU GLY GLU PHE GLY TRP SER GLY ALA ALA ALA SEQRES 28 B 390 THR TYR PHE TRP VAL ASP PRO THR LYS ASN MET THR GLY SEQRES 29 B 390 CYS VAL MET THR GLN PHE LEU GLY SER GLN HIS PRO ILE SEQRES 30 B 390 GLY SER ASP MET GLN ALA ALA ALA MET SER MET LEU GLY FORMUL 3 HOH *898(H2 O) HELIX 1 AA1 ASP A 3 GLN A 15 1 13 HELIX 2 AA2 MET A 59 ARG A 74 1 16 HELIX 3 AA3 PRO A 82 PHE A 86 5 5 HELIX 4 AA4 ASP A 87 LYS A 91 5 5 HELIX 5 AA5 THR A 110 THR A 116 1 7 HELIX 6 AA6 ILE A 131 GLN A 139 1 9 HELIX 7 AA7 ASP A 147 GLU A 157 1 11 HELIX 8 AA8 ILE A 172 GLY A 186 1 15 HELIX 9 AA9 ARG A 188 ILE A 197 1 10 HELIX 10 AB1 GLY A 214 LEU A 218 5 5 HELIX 11 AB2 LEU A 267 LEU A 277 1 11 HELIX 12 AB3 SER A 290 ALA A 299 1 10 HELIX 13 AB4 ASP A 330 ALA A 334 5 5 HELIX 14 AB5 PRO A 357 LYS A 359 5 3 HELIX 15 AB6 PRO A 375 LEU A 388 1 14 HELIX 16 AB7 LEU B 4 GLN B 15 1 12 HELIX 17 AB8 MET B 59 ARG B 74 1 16 HELIX 18 AB9 PRO B 82 PHE B 86 5 5 HELIX 19 AC1 ASP B 87 LYS B 91 5 5 HELIX 20 AC2 THR B 110 THR B 116 1 7 HELIX 21 AC3 ILE B 131 GLN B 139 1 9 HELIX 22 AC4 ASP B 147 GLU B 157 1 11 HELIX 23 AC5 ILE B 172 GLY B 186 1 15 HELIX 24 AC6 ARG B 188 ILE B 197 1 10 HELIX 25 AC7 GLY B 214 LEU B 218 5 5 HELIX 26 AC8 LEU B 267 LEU B 277 1 11 HELIX 27 AC9 SER B 290 ALA B 299 1 10 HELIX 28 AD1 ASP B 330 ALA B 334 5 5 HELIX 29 AD2 PRO B 357 LYS B 359 5 3 HELIX 30 AD3 PRO B 375 LEU B 388 1 14 SHEET 1 AA1 4 LYS A 30 GLY A 38 0 SHEET 2 AA1 4 GLY A 20 GLN A 27 -1 N ILE A 25 O PHE A 33 SHEET 3 AA1 4 MET A 361 MET A 366 -1 O MET A 366 N GLU A 22 SHEET 4 AA1 4 TYR A 352 ASP A 356 -1 N ASP A 356 O MET A 361 SHEET 1 AA2 2 ILE A 53 ARG A 55 0 SHEET 2 AA2 2 TYR A 264 THR A 266 -1 O SER A 265 N TYR A 54 SHEET 1 AA3 2 LYS A 94 ILE A 96 0 SHEET 2 AA3 2 ILE A 102 PRO A 104 -1 O GLU A 103 N VAL A 95 SHEET 1 AA4 2 TYR A 222 GLY A 223 0 SHEET 2 AA4 2 PHE A 369 LEU A 370 1 O LEU A 370 N TYR A 222 SHEET 1 AA5 2 MET A 309 ILE A 311 0 SHEET 2 AA5 2 GLU A 314 PHE A 316 -1 O GLU A 314 N ILE A 311 SHEET 1 AA6 3 TYR A 319 TRP A 321 0 SHEET 2 AA6 3 ARG A 326 MET A 328 -1 O VAL A 327 N SER A 320 SHEET 3 AA6 3 PHE A 343 GLY A 344 -1 O GLY A 344 N ARG A 326 SHEET 1 AA7 5 THR B 46 PHE B 47 0 SHEET 2 AA7 5 LYS B 30 ASP B 41 -1 N LYS B 40 O THR B 46 SHEET 3 AA7 5 GLY B 20 GLN B 27 -1 N ILE B 25 O PHE B 33 SHEET 4 AA7 5 MET B 361 MET B 366 -1 O MET B 366 N GLU B 22 SHEET 5 AA7 5 TYR B 352 ASP B 356 -1 N ASP B 356 O MET B 361 SHEET 1 AA8 2 ILE B 53 ARG B 55 0 SHEET 2 AA8 2 TYR B 264 THR B 266 -1 O SER B 265 N TYR B 54 SHEET 1 AA9 2 LYS B 94 ILE B 96 0 SHEET 2 AA9 2 ILE B 102 PRO B 104 -1 O GLU B 103 N VAL B 95 SHEET 1 AB1 2 MET B 309 ILE B 311 0 SHEET 2 AB1 2 GLU B 314 PHE B 316 -1 O GLU B 314 N ILE B 311 SHEET 1 AB2 3 TYR B 319 TRP B 321 0 SHEET 2 AB2 3 ARG B 326 MET B 328 -1 O VAL B 327 N SER B 320 SHEET 3 AB2 3 PHE B 343 GLY B 344 -1 O GLY B 344 N ARG B 326 CRYST1 121.541 121.541 155.173 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008228 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006444 0.00000