HEADER DNA BINDING PROTEIN 26-MAR-14 4P7A TITLE CRYSTAL STRUCTURE OF HUMAN MLH1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA MISMATCH REPAIR PROTEIN MLH1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MUTL PROTEIN HOMOLOG 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MLH1, COCA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM, DNA MISMATCH REPAIR, DNA DAMAGE, SGC, KEYWDS 2 DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.TEMPEL,R.LAM,H.ZENG,J.R.WALKER,P.LOPPNAU,C.BOUNTRA,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,J.MIN,H.WU,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 27-DEC-23 4P7A 1 LINK REVDAT 4 17-JUL-19 4P7A 1 HEADER REMARK ATOM REVDAT 3 16-DEC-15 4P7A 1 JRNL REVDAT 2 12-NOV-14 4P7A 1 SPRSDE REVDAT 1 09-APR-14 4P7A 0 SPRSDE 12-NOV-14 4P7A 3NA3 JRNL AUTH H.WU,H.ZENG,R.LAM,W.TEMPEL,I.D.KERR,J.MIN JRNL TITL STRUCTURE OF THE HUMAN MLH1 N-TERMINUS: IMPLICATIONS FOR JRNL TITL 2 PREDISPOSITION TO LYNCH SYNDROME. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 981 2015 JRNL REFN ESSN 2053-230X JRNL PMID 26249686 JRNL DOI 10.1107/S2053230X15010183 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1367 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2195 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -2.40000 REMARK 3 B12 (A**2) : 0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.236 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.410 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2284 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2127 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3114 ; 1.414 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4852 ; 0.800 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 6.534 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;36.591 ;23.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;13.307 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;24.898 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 377 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2621 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 500 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1223 ; 2.991 ; 3.602 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1222 ; 2.983 ; 3.600 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1527 ; 4.141 ; 5.384 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1370 -56.6788 18.5016 REMARK 3 T TENSOR REMARK 3 T11: 0.1838 T22: 0.1722 REMARK 3 T33: 0.1994 T12: -0.0310 REMARK 3 T13: -0.0393 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.0232 L22: 6.3497 REMARK 3 L33: 1.0213 L12: -0.3370 REMARK 3 L13: 1.2098 L23: -1.5515 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: -0.0804 S13: -0.0357 REMARK 3 S21: -0.1388 S22: -0.0573 S23: -0.3475 REMARK 3 S31: 0.0244 S32: -0.0034 S33: 0.0353 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7544 -20.4770 8.9830 REMARK 3 T TENSOR REMARK 3 T11: 0.0519 T22: 0.0262 REMARK 3 T33: 0.1298 T12: -0.0003 REMARK 3 T13: 0.0213 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 3.9262 L22: 4.3785 REMARK 3 L33: 3.2874 L12: -0.0340 REMARK 3 L13: 0.3404 L23: -1.1865 REMARK 3 S TENSOR REMARK 3 S11: 0.1170 S12: 0.0189 S13: -0.1967 REMARK 3 S21: 0.0611 S22: -0.2644 S23: -0.2492 REMARK 3 S31: 0.0996 S32: 0.2347 S33: 0.1474 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 210 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8412 -22.4485 -17.1678 REMARK 3 T TENSOR REMARK 3 T11: 0.3324 T22: 0.4644 REMARK 3 T33: 0.3947 T12: -0.0211 REMARK 3 T13: -0.1369 T23: -0.0924 REMARK 3 L TENSOR REMARK 3 L11: 3.3020 L22: 5.7493 REMARK 3 L33: 6.9218 L12: 0.2110 REMARK 3 L13: 0.8613 L23: 1.7503 REMARK 3 S TENSOR REMARK 3 S11: -0.1583 S12: 0.6624 S13: -0.4640 REMARK 3 S21: -0.2720 S22: 0.0946 S23: 0.0154 REMARK 3 S31: 0.7350 S32: -0.1302 S33: 0.0637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS ENTRY IS A RE-INTERPRETATION OF REMARK 3 THE DATA UNDERLYING ENTRY 3NA3. AUTOBUSTER WAS USED DURING REMARK 3 INTERMEDIATE REFINEMENT STEPS. COOT WAS USED FOR INTERACTIVE REMARK 3 MODEL BUILDING. MODEL GEOMETRY WAS EVALUATED WITH MOLPROBITY. REMARK 4 REMARK 4 4P7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19468 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 1.11300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 10% ISOPROPANOL, 0.1 M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.60833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.21667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.60833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.21667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HAS NOT BEEN DETERMINED AS PART OF THIS STUDY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 47.28400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -81.89829 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 86 REMARK 465 SER A 87 REMARK 465 PHE A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 LEU A 91 REMARK 465 ALA A 92 REMARK 465 SER A 93 REMARK 465 ILE A 94 REMARK 465 SER A 95 REMARK 465 THR A 96 REMARK 465 TYR A 97 REMARK 465 GLN A 301 REMARK 465 ASN A 302 REMARK 465 VAL A 303 REMARK 465 ASP A 304 REMARK 465 VAL A 305 REMARK 465 ASN A 306 REMARK 465 VAL A 307 REMARK 465 HIS A 308 REMARK 465 PRO A 309 REMARK 465 THR A 310 REMARK 465 LYS A 311 REMARK 465 HIS A 312 REMARK 465 GLU A 313 REMARK 465 VAL A 314 REMARK 465 HIS A 315 REMARK 465 PHE A 316 REMARK 465 LEU A 317 REMARK 465 HIS A 318 REMARK 465 GLU A 319 REMARK 465 SER A 337 REMARK 465 ASN A 338 REMARK 465 SER A 339 REMARK 465 SER A 340 REMARK 465 ARG A 341 REMARK 465 MET A 342 REMARK 465 TYR A 343 REMARK 465 PHE A 344 REMARK 465 THR A 345 REMARK 465 GLN A 346 REMARK 465 THR A 347 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 26 CG CD OE1 NE2 REMARK 470 LYS A 43 CE NZ REMARK 470 LYS A 52 CE NZ REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 140 CE NZ REMARK 470 ARG A 163 NE CZ NH1 NH2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 LYS A 167 CD CE NZ REMARK 470 LYS A 175 CD CE NZ REMARK 470 LYS A 195 NZ REMARK 470 ASN A 209 CG OD1 ND2 REMARK 470 ARG A 217 NE CZ NH1 NH2 REMARK 470 ARG A 226 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 THR A 237 OG1 CG2 REMARK 470 LEU A 238 CG CD1 CD2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ASN A 250 OD1 ND2 REMARK 470 TYR A 251 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 252 OG REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 THR A 270 OG1 CG2 REMARK 470 LEU A 272 CG CD1 CD2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 LEU A 284 CG CD1 CD2 REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 ASN A 287 CG OD1 ND2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 SER A 299 OG REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 SER A 321 OG REMARK 470 ILE A 322 CG1 CG2 CD1 REMARK 470 LEU A 323 CG CD1 CD2 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 ARG A 325 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 326 CG1 CG2 REMARK 470 GLN A 327 CG CD OE1 NE2 REMARK 470 GLN A 328 CG CD OE1 NE2 REMARK 470 LYS A 333 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 26 -46.53 77.09 REMARK 500 ASN A 209 52.27 -113.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 38 OD1 REMARK 620 2 ADP A 402 O1B 93.9 REMARK 620 3 ADP A 402 O1A 97.5 83.2 REMARK 620 4 HOH A 510 O 87.8 177.3 98.5 REMARK 620 5 HOH A 511 O 86.2 87.5 170.2 90.7 REMARK 620 6 HOH A 512 O 173.1 88.6 89.2 89.4 87.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NA3 RELATED DB: PDB REMARK 900 THIS ENTRY IS A RE-INTERPRETATION OF THE DATA UNDERLYING ENTRY 3NA3. DBREF 4P7A A 1 347 UNP P40692 MLH1_HUMAN 1 347 SEQADV 4P7A GLY A 0 UNP P40692 EXPRESSION TAG SEQRES 1 A 348 GLY MET SER PHE VAL ALA GLY VAL ILE ARG ARG LEU ASP SEQRES 2 A 348 GLU THR VAL VAL ASN ARG ILE ALA ALA GLY GLU VAL ILE SEQRES 3 A 348 GLN ARG PRO ALA ASN ALA ILE LYS GLU MET ILE GLU ASN SEQRES 4 A 348 CYS LEU ASP ALA LYS SER THR SER ILE GLN VAL ILE VAL SEQRES 5 A 348 LYS GLU GLY GLY LEU LYS LEU ILE GLN ILE GLN ASP ASN SEQRES 6 A 348 GLY THR GLY ILE ARG LYS GLU ASP LEU ASP ILE VAL CYS SEQRES 7 A 348 GLU ARG PHE THR THR SER LYS LEU GLN SER PHE GLU ASP SEQRES 8 A 348 LEU ALA SER ILE SER THR TYR GLY PHE ARG GLY GLU ALA SEQRES 9 A 348 LEU ALA SER ILE SER HIS VAL ALA HIS VAL THR ILE THR SEQRES 10 A 348 THR LYS THR ALA ASP GLY LYS CYS ALA TYR ARG ALA SER SEQRES 11 A 348 TYR SER ASP GLY LYS LEU LYS ALA PRO PRO LYS PRO CYS SEQRES 12 A 348 ALA GLY ASN GLN GLY THR GLN ILE THR VAL GLU ASP LEU SEQRES 13 A 348 PHE TYR ASN ILE ALA THR ARG ARG LYS ALA LEU LYS ASN SEQRES 14 A 348 PRO SER GLU GLU TYR GLY LYS ILE LEU GLU VAL VAL GLY SEQRES 15 A 348 ARG TYR SER VAL HIS ASN ALA GLY ILE SER PHE SER VAL SEQRES 16 A 348 LYS LYS GLN GLY GLU THR VAL ALA ASP VAL ARG THR LEU SEQRES 17 A 348 PRO ASN ALA SER THR VAL ASP ASN ILE ARG SER ILE PHE SEQRES 18 A 348 GLY ASN ALA VAL SER ARG GLU LEU ILE GLU ILE GLY CYS SEQRES 19 A 348 GLU ASP LYS THR LEU ALA PHE LYS MET ASN GLY TYR ILE SEQRES 20 A 348 SER ASN ALA ASN TYR SER VAL LYS LYS CYS ILE PHE LEU SEQRES 21 A 348 LEU PHE ILE ASN HIS ARG LEU VAL GLU SER THR SER LEU SEQRES 22 A 348 ARG LYS ALA ILE GLU THR VAL TYR ALA ALA TYR LEU PRO SEQRES 23 A 348 LYS ASN THR HIS PRO PHE LEU TYR LEU SER LEU GLU ILE SEQRES 24 A 348 SER PRO GLN ASN VAL ASP VAL ASN VAL HIS PRO THR LYS SEQRES 25 A 348 HIS GLU VAL HIS PHE LEU HIS GLU GLU SER ILE LEU GLU SEQRES 26 A 348 ARG VAL GLN GLN HIS ILE GLU SER LYS LEU LEU GLY SER SEQRES 27 A 348 ASN SER SER ARG MET TYR PHE THR GLN THR HET MG A 401 1 HET ADP A 402 27 HET UNX A 403 1 HET UNX A 404 1 HET UNX A 405 1 HET UNX A 406 1 HET UNX A 407 1 HET UNX A 408 1 HET UNX A 409 1 HET UNX A 410 1 HET UNX A 411 1 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 UNX 9(X) FORMUL 13 HOH *35(H2 O) HELIX 1 AA1 ASP A 12 GLN A 26 1 15 HELIX 2 AA2 ARG A 27 ALA A 42 1 16 HELIX 3 AA3 ARG A 69 LEU A 73 5 5 HELIX 4 AA4 GLU A 102 VAL A 110 1 9 HELIX 5 AA5 ILE A 159 LEU A 166 1 8 HELIX 6 AA6 ASN A 168 ASN A 187 1 20 HELIX 7 AA7 SER A 211 GLY A 221 1 11 HELIX 8 AA8 GLY A 221 ARG A 226 1 6 HELIX 9 AA9 SER A 269 ALA A 282 1 14 HELIX 10 AB1 SER A 321 GLY A 336 1 16 SHEET 1 AA1 3 LYS A 134 LEU A 135 0 SHEET 2 AA1 3 ALA A 125 SER A 131 -1 N SER A 131 O LYS A 134 SHEET 3 AA1 3 LYS A 140 CYS A 142 -1 O LYS A 140 N ARG A 127 SHEET 1 AA2 8 LYS A 134 LEU A 135 0 SHEET 2 AA2 8 ALA A 125 SER A 131 -1 N SER A 131 O LYS A 134 SHEET 3 AA2 8 HIS A 112 LYS A 118 -1 N ILE A 115 O ALA A 128 SHEET 4 AA2 8 GLY A 147 GLU A 153 -1 O GLN A 149 N THR A 116 SHEET 5 AA2 8 LEU A 58 ASP A 63 -1 N ILE A 59 O VAL A 152 SHEET 6 AA2 8 SER A 46 LYS A 52 -1 N GLN A 48 O GLN A 62 SHEET 7 AA2 8 SER A 191 LYS A 196 1 O SER A 191 N ILE A 47 SHEET 8 AA2 8 VAL A 204 ARG A 205 -1 O VAL A 204 N VAL A 194 SHEET 1 AA3 5 LEU A 228 ASP A 235 0 SHEET 2 AA3 5 PHE A 240 SER A 247 -1 O ILE A 246 N ILE A 229 SHEET 3 AA3 5 PHE A 291 ILE A 298 -1 O SER A 295 N ASN A 243 SHEET 4 AA3 5 ILE A 257 ILE A 262 1 N PHE A 261 O LEU A 296 SHEET 5 AA3 5 ARG A 265 LEU A 266 -1 O ARG A 265 N ILE A 262 LINK OD1 ASN A 38 MG MG A 401 1555 1555 2.10 LINK MG MG A 401 O1B ADP A 402 1555 1555 2.12 LINK MG MG A 401 O1A ADP A 402 1555 1555 1.98 LINK MG MG A 401 O HOH A 510 1555 1555 2.05 LINK MG MG A 401 O HOH A 511 1555 1555 1.91 LINK MG MG A 401 O HOH A 512 1555 1555 2.02 SITE 1 AC1 5 ASN A 38 ADP A 402 HOH A 510 HOH A 511 SITE 2 AC1 5 HOH A 512 SITE 1 AC2 23 ASN A 38 ALA A 42 ASP A 63 GLY A 67 SITE 2 AC2 23 ILE A 68 VAL A 76 THR A 81 THR A 82 SITE 3 AC2 23 SER A 83 LYS A 84 ARG A 100 GLY A 101 SITE 4 AC2 23 ALA A 103 LEU A 104 THR A 148 MG A 401 SITE 5 AC2 23 HOH A 503 HOH A 510 HOH A 511 HOH A 512 SITE 6 AC2 23 HOH A 513 HOH A 517 HOH A 520 CRYST1 94.568 94.568 85.825 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010574 0.006105 0.000000 0.00000 SCALE2 0.000000 0.012210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011652 0.00000