HEADER HYDROLASE 27-MAR-14 4P7Q TITLE STRUCTURE OF ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN IN COMPLEX WITH TITLE 2 N-ACETYLGLUCOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE N-DEACETYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 310-672; COMPND 5 SYNONYM: PGAB, POLY-BETA-1,6-GLCNAC N-DEACETYLASE; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PGAB, YCDR, B1023, JW5142; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA ALPHA BARREL, CARBOHYDRATE BINDING, GLYCOSYL HYDROLASE FOLD, KEYWDS 2 COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.LITTLE,G.LI,C.ING,B.DIFRANCESCO,N.C.BAMFORD,H.ROBINSON,M.NITZ, AUTHOR 2 R.POMES,P.L.HOWELL REVDAT 7 27-SEP-23 4P7Q 1 HETSYN REVDAT 6 29-JUL-20 4P7Q 1 COMPND REMARK HETNAM SITE REVDAT 5 08-JAN-20 4P7Q 1 REMARK REVDAT 4 22-NOV-17 4P7Q 1 COMPND SOURCE JRNL REMARK REVDAT 3 01-OCT-14 4P7Q 1 JRNL REVDAT 2 23-JUL-14 4P7Q 1 JRNL REVDAT 1 02-JUL-14 4P7Q 0 JRNL AUTH D.J.LITTLE,G.LI,C.ING,B.R.DIFRANCESCO,N.C.BAMFORD, JRNL AUTH 2 H.ROBINSON,M.NITZ,R.POMES,P.L.HOWELL JRNL TITL MODIFICATION AND PERIPLASMIC TRANSLOCATION OF THE BIOFILM JRNL TITL 2 EXOPOLYSACCHARIDE POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 11013 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 24994902 JRNL DOI 10.1073/PNAS.1406388111 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1615) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 46475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2432 - 3.9784 1.00 3405 154 0.1397 0.1788 REMARK 3 2 3.9784 - 3.1583 1.00 3270 146 0.1455 0.1860 REMARK 3 3 3.1583 - 2.7592 1.00 3226 145 0.1635 0.2066 REMARK 3 4 2.7592 - 2.5070 1.00 3188 143 0.1773 0.2056 REMARK 3 5 2.5070 - 2.3273 1.00 3190 144 0.1639 0.1824 REMARK 3 6 2.3273 - 2.1901 1.00 3197 144 0.1569 0.1855 REMARK 3 7 2.1901 - 2.0805 1.00 3160 141 0.1635 0.1958 REMARK 3 8 2.0805 - 1.9899 0.99 3120 142 0.1643 0.2042 REMARK 3 9 1.9899 - 1.9133 0.99 3142 141 0.1635 0.2214 REMARK 3 10 1.9133 - 1.8473 1.00 3138 141 0.1647 0.2281 REMARK 3 11 1.8473 - 1.7895 0.99 3127 140 0.1676 0.2107 REMARK 3 12 1.7895 - 1.7384 0.99 3097 139 0.1802 0.2236 REMARK 3 13 1.7384 - 1.6926 1.00 3107 141 0.1872 0.2269 REMARK 3 14 1.6926 - 1.6513 0.98 3108 139 0.1979 0.2551 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3071 REMARK 3 ANGLE : 1.025 4177 REMARK 3 CHIRALITY : 0.046 451 REMARK 3 PLANARITY : 0.005 539 REMARK 3 DIHEDRAL : 13.592 1118 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4360 88.5909 5.6216 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: 0.1669 REMARK 3 T33: 0.2253 T12: -0.0189 REMARK 3 T13: 0.0430 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.6808 L22: 3.0873 REMARK 3 L33: 8.6738 L12: -2.1573 REMARK 3 L13: 0.9104 L23: -1.6156 REMARK 3 S TENSOR REMARK 3 S11: 0.0871 S12: 0.0977 S13: -0.0148 REMARK 3 S21: -0.1305 S22: -0.0470 S23: 0.0484 REMARK 3 S31: -0.0076 S32: 0.2066 S33: -0.0553 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5930 87.8348 -1.0951 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.1575 REMARK 3 T33: 0.1518 T12: 0.0078 REMARK 3 T13: -0.0055 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.0147 L22: 2.9371 REMARK 3 L33: 1.4878 L12: -1.0211 REMARK 3 L13: -0.2272 L23: 0.2825 REMARK 3 S TENSOR REMARK 3 S11: 0.1337 S12: 0.1550 S13: 0.0428 REMARK 3 S21: -0.1821 S22: -0.1424 S23: 0.0793 REMARK 3 S31: -0.0248 S32: -0.0532 S33: 0.0013 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 392 THROUGH 502 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0181 66.0885 6.7664 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.2157 REMARK 3 T33: 0.1865 T12: -0.0056 REMARK 3 T13: 0.0014 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.8489 L22: 1.6627 REMARK 3 L33: 1.0460 L12: -0.4527 REMARK 3 L13: 0.0724 L23: 0.1519 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: -0.0019 S13: -0.0726 REMARK 3 S21: -0.1130 S22: -0.1303 S23: -0.0000 REMARK 3 S31: 0.1182 S32: 0.0278 S33: 0.0422 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 503 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3711 70.3877 12.2131 REMARK 3 T TENSOR REMARK 3 T11: 0.1387 T22: 0.2351 REMARK 3 T33: 0.2491 T12: -0.0150 REMARK 3 T13: -0.0203 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 0.9797 L22: 5.0705 REMARK 3 L33: 6.5356 L12: 1.8090 REMARK 3 L13: -2.1193 L23: -5.6352 REMARK 3 S TENSOR REMARK 3 S11: 0.1014 S12: -0.0802 S13: 0.0207 REMARK 3 S21: 0.1677 S22: -0.4088 S23: -0.4903 REMARK 3 S31: -0.0113 S32: 0.3982 S33: 0.3407 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 530 THROUGH 595 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0307 76.1417 21.8978 REMARK 3 T TENSOR REMARK 3 T11: 0.1823 T22: 0.1598 REMARK 3 T33: 0.1322 T12: -0.0228 REMARK 3 T13: -0.0133 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.5650 L22: 2.6120 REMARK 3 L33: 1.9027 L12: -1.4413 REMARK 3 L13: -0.5927 L23: 0.4465 REMARK 3 S TENSOR REMARK 3 S11: -0.1885 S12: -0.1449 S13: -0.1465 REMARK 3 S21: 0.4046 S22: 0.0750 S23: 0.1004 REMARK 3 S31: 0.0770 S32: -0.0043 S33: 0.1068 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 596 THROUGH 637 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8341 83.0104 20.2285 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.1453 REMARK 3 T33: 0.1670 T12: -0.0320 REMARK 3 T13: 0.0088 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 3.7242 L22: 3.6104 REMARK 3 L33: 2.5172 L12: -1.4585 REMARK 3 L13: -1.5177 L23: -0.6199 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: 0.1202 S13: -0.3377 REMARK 3 S21: 0.0333 S22: -0.0068 S23: 0.2986 REMARK 3 S31: 0.0690 S32: -0.1897 S33: -0.0540 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 638 THROUGH 668 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0266 93.2725 15.5866 REMARK 3 T TENSOR REMARK 3 T11: 0.1691 T22: 0.1315 REMARK 3 T33: 0.1626 T12: -0.0156 REMARK 3 T13: 0.0295 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 5.3686 L22: 4.5452 REMARK 3 L33: 3.3863 L12: -1.7708 REMARK 3 L13: 0.8565 L23: -1.0756 REMARK 3 S TENSOR REMARK 3 S11: -0.0878 S12: -0.0816 S13: 0.4079 REMARK 3 S21: 0.1549 S22: 0.0951 S23: 0.0740 REMARK 3 S31: -0.4095 S32: -0.0718 S33: -0.0349 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200873. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46798 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 64.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 0.59200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4P7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.1 M BIS-TRIS, 0.5 M N REMARK 280 -ACETYLGLUCOSAMINE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.19000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.63800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.97900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.63800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.19000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.97900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 306 REMARK 465 SER A 307 REMARK 465 HIS A 308 REMARK 465 MET A 309 REMARK 465 PRO A 669 REMARK 465 LYS A 670 REMARK 465 ASN A 671 REMARK 465 ASP A 672 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 LYS A 615 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 333 NH2 ARG A 384 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 348 -169.88 -128.87 REMARK 500 ASP A 409 126.01 -34.20 REMARK 500 GLN A 599 -0.66 72.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1054 DISTANCE = 5.83 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P7L RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN APO FORM REMARK 900 RELATED ID: 4P7N RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN IN COMPLEX WITH GLUCOSAMINE REMARK 900 RELATED ID: 4P7O RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN APO FORM, P1 CRYSTAL FORM REMARK 900 RELATED ID: 4P7R RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN IN COMPLEX WITH A POLY- REMARK 900 ALPHA-1,6-N-ACETYL-D-GLUCOSAMINE (PNAG) HEXAMER DBREF 4P7Q A 310 672 UNP P75906 PGAB_ECOLI 310 672 SEQADV 4P7Q GLY A 306 UNP P75906 EXPRESSION TAG SEQADV 4P7Q SER A 307 UNP P75906 EXPRESSION TAG SEQADV 4P7Q HIS A 308 UNP P75906 EXPRESSION TAG SEQADV 4P7Q MET A 309 UNP P75906 EXPRESSION TAG SEQRES 1 A 367 GLY SER HIS MET GLU LYS SER PRO GLN ARG ILE MET HIS SEQRES 2 A 367 ILE ASP LEU ASP TYR VAL TYR ASP GLU ASN LEU GLN GLN SEQRES 3 A 367 MET ASP ARG ASN ILE ASP VAL LEU ILE GLN ARG VAL LYS SEQRES 4 A 367 ASP MET GLN ILE SER THR VAL TYR LEU GLN ALA PHE ALA SEQRES 5 A 367 ASP PRO ASP GLY ASP GLY LEU VAL LYS GLU VAL TRP PHE SEQRES 6 A 367 PRO ASN ARG LEU LEU PRO MET LYS ALA ASP ILE PHE SER SEQRES 7 A 367 ARG VAL ALA TRP GLN LEU ARG THR ARG SER GLY VAL ASN SEQRES 8 A 367 ILE TYR ALA TRP MET PRO VAL LEU SER TRP ASP LEU ASP SEQRES 9 A 367 PRO THR LEU THR ARG VAL LYS TYR LEU PRO THR GLY GLU SEQRES 10 A 367 LYS LYS ALA GLN ILE HIS PRO GLU GLN TYR HIS ARG LEU SEQRES 11 A 367 SER PRO PHE ASP ASP ARG VAL ARG ALA GLN VAL GLY MET SEQRES 12 A 367 LEU TYR GLU ASP LEU ALA GLY HIS ALA ALA PHE ASP GLY SEQRES 13 A 367 ILE LEU PHE HIS ASP ASP ALA LEU LEU SER ASP TYR GLU SEQRES 14 A 367 ASP ALA SER ALA PRO ALA ILE THR ALA TYR GLN GLN ALA SEQRES 15 A 367 GLY PHE SER GLY SER LEU SER GLU ILE ARG GLN ASN PRO SEQRES 16 A 367 GLU GLN PHE LYS GLN TRP ALA ARG PHE LYS SER ARG ALA SEQRES 17 A 367 LEU THR ASP PHE THR LEU GLU LEU SER ALA ARG VAL LYS SEQRES 18 A 367 ALA ILE ARG GLY PRO HIS ILE LYS THR ALA ARG ASN ILE SEQRES 19 A 367 PHE ALA LEU PRO VAL ILE GLN PRO GLU SER GLU ALA TRP SEQRES 20 A 367 PHE ALA GLN ASN TYR ALA ASP PHE LEU LYS SER TYR ASP SEQRES 21 A 367 TRP THR ALA ILE MET ALA MET PRO TYR LEU GLU GLY VAL SEQRES 22 A 367 ALA GLU LYS SER ALA ASP GLN TRP LEU ILE GLN LEU THR SEQRES 23 A 367 ASN GLN ILE LYS ASN ILE PRO GLN ALA LYS ASP LYS SER SEQRES 24 A 367 ILE LEU GLU LEU GLN ALA GLN ASN TRP GLN LYS ASN GLY SEQRES 25 A 367 GLN HIS GLN ALA ILE SER SER GLN GLN LEU ALA HIS TRP SEQRES 26 A 367 MET SER LEU LEU GLN LEU ASN GLY VAL LYS ASN TYR GLY SEQRES 27 A 367 TYR TYR PRO ASP ASN PHE LEU HIS ASN GLN PRO GLU ILE SEQRES 28 A 367 ASP LEU ILE ARG PRO GLU PHE SER THR ALA TRP TYR PRO SEQRES 29 A 367 LYS ASN ASP HET EDO A 701 4 HET EDO A 702 4 HET NAG A 703 15 HET NAG A 704 15 HET NAG A 705 15 HET NAG A 706 15 HETNAM EDO 1,2-ETHANEDIOL HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 8 HOH *300(H2 O) HELIX 1 AA1 ASN A 328 GLN A 347 1 20 HELIX 2 AA2 ILE A 381 ARG A 392 1 12 HELIX 3 AA3 ASP A 439 ALA A 457 1 19 HELIX 4 AA4 SER A 477 ALA A 487 1 11 HELIX 5 AA5 SER A 492 GLN A 498 1 7 HELIX 6 AA6 GLN A 502 GLY A 530 1 29 HELIX 7 AA7 PHE A 540 GLN A 546 1 7 HELIX 8 AA8 SER A 549 ALA A 554 1 6 HELIX 9 AA9 ASN A 556 TYR A 564 1 9 HELIX 10 AB1 ALA A 579 LYS A 581 5 3 HELIX 11 AB2 SER A 582 ASN A 596 1 15 HELIX 12 AB3 GLN A 599 ASP A 602 5 4 HELIX 13 AB4 SER A 623 ASN A 637 1 15 HELIX 14 AB5 ASN A 648 ASN A 652 5 5 HELIX 15 AB6 GLU A 655 SER A 664 1 10 SHEET 1 AA1 9 ARG A 315 ILE A 319 0 SHEET 2 AA1 9 THR A 350 GLN A 354 1 O TYR A 352 N ILE A 319 SHEET 3 AA1 9 ASN A 396 MET A 401 1 O TYR A 398 N LEU A 353 SHEET 4 AA1 9 GLY A 461 PHE A 464 1 O GLY A 461 N ALA A 399 SHEET 5 AA1 9 LYS A 534 ILE A 539 1 O ALA A 536 N PHE A 464 SHEET 6 AA1 9 TRP A 566 MET A 570 1 O MET A 570 N ILE A 539 SHEET 7 AA1 9 SER A 604 GLN A 609 1 O GLU A 607 N ILE A 569 SHEET 8 AA1 9 TYR A 642 TYR A 645 1 O GLY A 643 N LEU A 608 SHEET 9 AA1 9 ARG A 315 ILE A 319 1 N HIS A 318 O TYR A 644 SHEET 1 AA2 2 GLN A 611 ASN A 612 0 SHEET 2 AA2 2 GLN A 620 ALA A 621 -1 O GLN A 620 N ASN A 612 CISPEP 1 SER A 312 PRO A 313 0 -9.04 CISPEP 2 GLU A 474 ASP A 475 0 -17.54 CISPEP 3 TYR A 645 PRO A 646 0 -4.89 CISPEP 4 GLN A 653 PRO A 654 0 -0.60 CRYST1 42.380 77.958 115.276 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008675 0.00000