HEADER HYDROLASE 27-MAR-14 4P7R TITLE STRUCTURE OF ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN IN COMPLEX WITH A TITLE 2 POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE (PNAG) HEXAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE N-DEACETYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 310-672; COMPND 5 SYNONYM: PGAB, POLY-BETA-1,6-GLCNAC N-DEACETYLASE; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PGAB, YCDR, B1023, JW5142; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA ALPHA BARREL, CARBOHYDRATE BINDING, GLYCOSYL HYDROLASE FOLD, KEYWDS 2 COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.LITTLE,G.LI,C.ING,B.DIFRANCESCO,N.C.BAMFORD,H.ROBINSON,M.NITZ, AUTHOR 2 R.POMES,P.L.HOWELL REVDAT 7 27-SEP-23 4P7R 1 HETSYN LINK REVDAT 6 29-JUL-20 4P7R 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 08-JAN-20 4P7R 1 REMARK REVDAT 4 22-NOV-17 4P7R 1 COMPND SOURCE JRNL REMARK REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 01-OCT-14 4P7R 1 JRNL REVDAT 2 23-JUL-14 4P7R 1 JRNL REVDAT 1 02-JUL-14 4P7R 0 JRNL AUTH D.J.LITTLE,G.LI,C.ING,B.R.DIFRANCESCO,N.C.BAMFORD, JRNL AUTH 2 H.ROBINSON,M.NITZ,R.POMES,P.L.HOWELL JRNL TITL MODIFICATION AND PERIPLASMIC TRANSLOCATION OF THE BIOFILM JRNL TITL 2 EXOPOLYSACCHARIDE POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 11013 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 24994902 JRNL DOI 10.1073/PNAS.1406388111 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1615) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.620 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6465 - 4.3447 1.00 2588 154 0.1560 0.1804 REMARK 3 2 4.3447 - 3.4492 1.00 2466 147 0.1410 0.1726 REMARK 3 3 3.4492 - 3.0134 1.00 2419 144 0.1571 0.1982 REMARK 3 4 3.0134 - 2.7379 1.00 2430 145 0.1660 0.1796 REMARK 3 5 2.7379 - 2.5417 1.00 2394 142 0.1648 0.2205 REMARK 3 6 2.5417 - 2.3919 1.00 2400 143 0.1624 0.1982 REMARK 3 7 2.3919 - 2.2721 1.00 2402 142 0.1579 0.1854 REMARK 3 8 2.2721 - 2.1732 1.00 2385 143 0.1574 0.1797 REMARK 3 9 2.1732 - 2.0896 1.00 2358 140 0.1632 0.2196 REMARK 3 10 2.0896 - 2.0175 1.00 2368 141 0.1575 0.1909 REMARK 3 11 2.0175 - 1.9544 1.00 2382 142 0.1610 0.2063 REMARK 3 12 1.9544 - 1.8985 1.00 2363 141 0.1716 0.2282 REMARK 3 13 1.8985 - 1.8485 1.00 2361 140 0.1806 0.2453 REMARK 3 14 1.8485 - 1.8034 0.96 2287 136 0.1925 0.2389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3062 REMARK 3 ANGLE : 1.146 4167 REMARK 3 CHIRALITY : 0.055 451 REMARK 3 PLANARITY : 0.005 538 REMARK 3 DIHEDRAL : 18.241 1130 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6184 63.5260 117.4762 REMARK 3 T TENSOR REMARK 3 T11: 0.2000 T22: 0.1739 REMARK 3 T33: 0.2142 T12: 0.0025 REMARK 3 T13: -0.0085 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.3844 L22: 2.8704 REMARK 3 L33: 2.9507 L12: -1.4085 REMARK 3 L13: -0.6297 L23: 1.7565 REMARK 3 S TENSOR REMARK 3 S11: 0.1483 S12: 0.1620 S13: 0.0172 REMARK 3 S21: -0.1531 S22: -0.1046 S23: -0.1448 REMARK 3 S31: -0.0054 S32: -0.0630 S33: -0.0373 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 347 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9632 71.5036 113.5722 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.1891 REMARK 3 T33: 0.1649 T12: 0.0206 REMARK 3 T13: 0.0144 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.0437 L22: 5.1570 REMARK 3 L33: 3.0805 L12: -1.1957 REMARK 3 L13: 0.7383 L23: -1.7621 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: 0.1902 S13: -0.0808 REMARK 3 S21: -0.3786 S22: -0.1157 S23: -0.0373 REMARK 3 S31: 0.1086 S32: -0.0252 S33: -0.0194 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 392 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3648 86.0129 119.1252 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.1831 REMARK 3 T33: 0.1396 T12: -0.0047 REMARK 3 T13: 0.0058 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.2889 L22: 3.6195 REMARK 3 L33: 1.4363 L12: -0.6316 REMARK 3 L13: -0.0167 L23: -0.4983 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: 0.0546 S13: 0.0395 REMARK 3 S21: -0.1212 S22: -0.1353 S23: -0.0599 REMARK 3 S31: -0.0780 S32: 0.0008 S33: 0.0403 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 478 THROUGH 502 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1254 103.1376 130.7081 REMARK 3 T TENSOR REMARK 3 T11: 0.2737 T22: 0.2326 REMARK 3 T33: 0.2221 T12: 0.0213 REMARK 3 T13: 0.0038 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.6319 L22: 3.6192 REMARK 3 L33: 8.1585 L12: 0.0431 REMARK 3 L13: 1.1344 L23: 1.3963 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: -0.1629 S13: 0.4364 REMARK 3 S21: 0.1751 S22: -0.0329 S23: 0.1203 REMARK 3 S31: -0.8509 S32: -0.1278 S33: 0.1421 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 503 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6371 85.2597 127.1296 REMARK 3 T TENSOR REMARK 3 T11: 0.2193 T22: 0.2444 REMARK 3 T33: 0.2584 T12: -0.0093 REMARK 3 T13: -0.0018 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.3338 L22: 4.5475 REMARK 3 L33: 6.2416 L12: 2.1852 REMARK 3 L13: 2.4573 L23: 6.6904 REMARK 3 S TENSOR REMARK 3 S11: 0.0680 S12: -0.0802 S13: -0.0619 REMARK 3 S21: 0.1390 S22: -0.4091 S23: 0.4633 REMARK 3 S31: 0.1104 S32: -0.4042 S33: 0.4273 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 530 THROUGH 595 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0857 79.6193 136.7340 REMARK 3 T TENSOR REMARK 3 T11: 0.2071 T22: 0.1716 REMARK 3 T33: 0.1400 T12: -0.0184 REMARK 3 T13: 0.0135 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 3.0151 L22: 2.5546 REMARK 3 L33: 1.6693 L12: -1.3350 REMARK 3 L13: 0.6170 L23: -0.5292 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: -0.2453 S13: 0.0883 REMARK 3 S21: 0.3925 S22: 0.0733 S23: -0.0438 REMARK 3 S31: -0.0478 S32: -0.0730 S33: 0.0671 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 596 THROUGH 668 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5225 68.5498 132.8873 REMARK 3 T TENSOR REMARK 3 T11: 0.1703 T22: 0.1236 REMARK 3 T33: 0.1428 T12: -0.0113 REMARK 3 T13: -0.0156 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 4.4684 L22: 2.8472 REMARK 3 L33: 3.9598 L12: -0.8074 REMARK 3 L13: -0.1001 L23: 0.7761 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: -0.0077 S13: -0.0323 REMARK 3 S21: 0.0317 S22: -0.0064 S23: -0.0955 REMARK 3 S31: 0.0884 S32: 0.1714 S33: -0.0175 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P7R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35680 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 48.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4P7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.1 M BIS-TRIS, 25 MM REMARK 280 PNAG HEXAMER, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.11600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.42200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.89300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.42200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.11600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.89300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 306 REMARK 465 SER A 307 REMARK 465 HIS A 308 REMARK 465 MET A 309 REMARK 465 PRO A 669 REMARK 465 LYS A 670 REMARK 465 ASN A 671 REMARK 465 ASP A 672 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 LYS A 615 CG CD CE NZ REMARK 470 LYS A 640 CG CD CE NZ REMARK 470 TYR A 668 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 841 O HOH A 869 4477 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 348 -167.42 -124.00 REMARK 500 ASP A 409 128.23 -32.23 REMARK 500 ASN A 616 -71.77 -61.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P7L RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN APO FORM REMARK 900 RELATED ID: 4P7N RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN IN COMPLEX WITH GLUCOSAMINE REMARK 900 RELATED ID: 4P7O RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN APO FORM, P1 CRYSTAL FORM REMARK 900 RELATED ID: 4P7Q RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN IN COMPLEX WITH N- REMARK 900 ACETYLGLUCOSAMINE DBREF 4P7R A 310 672 UNP P75906 PGAB_ECOLI 310 672 SEQADV 4P7R GLY A 306 UNP P75906 EXPRESSION TAG SEQADV 4P7R SER A 307 UNP P75906 EXPRESSION TAG SEQADV 4P7R HIS A 308 UNP P75906 EXPRESSION TAG SEQADV 4P7R MET A 309 UNP P75906 EXPRESSION TAG SEQRES 1 A 367 GLY SER HIS MET GLU LYS SER PRO GLN ARG ILE MET HIS SEQRES 2 A 367 ILE ASP LEU ASP TYR VAL TYR ASP GLU ASN LEU GLN GLN SEQRES 3 A 367 MET ASP ARG ASN ILE ASP VAL LEU ILE GLN ARG VAL LYS SEQRES 4 A 367 ASP MET GLN ILE SER THR VAL TYR LEU GLN ALA PHE ALA SEQRES 5 A 367 ASP PRO ASP GLY ASP GLY LEU VAL LYS GLU VAL TRP PHE SEQRES 6 A 367 PRO ASN ARG LEU LEU PRO MET LYS ALA ASP ILE PHE SER SEQRES 7 A 367 ARG VAL ALA TRP GLN LEU ARG THR ARG SER GLY VAL ASN SEQRES 8 A 367 ILE TYR ALA TRP MET PRO VAL LEU SER TRP ASP LEU ASP SEQRES 9 A 367 PRO THR LEU THR ARG VAL LYS TYR LEU PRO THR GLY GLU SEQRES 10 A 367 LYS LYS ALA GLN ILE HIS PRO GLU GLN TYR HIS ARG LEU SEQRES 11 A 367 SER PRO PHE ASP ASP ARG VAL ARG ALA GLN VAL GLY MET SEQRES 12 A 367 LEU TYR GLU ASP LEU ALA GLY HIS ALA ALA PHE ASP GLY SEQRES 13 A 367 ILE LEU PHE HIS ASP ASP ALA LEU LEU SER ASP TYR GLU SEQRES 14 A 367 ASP ALA SER ALA PRO ALA ILE THR ALA TYR GLN GLN ALA SEQRES 15 A 367 GLY PHE SER GLY SER LEU SER GLU ILE ARG GLN ASN PRO SEQRES 16 A 367 GLU GLN PHE LYS GLN TRP ALA ARG PHE LYS SER ARG ALA SEQRES 17 A 367 LEU THR ASP PHE THR LEU GLU LEU SER ALA ARG VAL LYS SEQRES 18 A 367 ALA ILE ARG GLY PRO HIS ILE LYS THR ALA ARG ASN ILE SEQRES 19 A 367 PHE ALA LEU PRO VAL ILE GLN PRO GLU SER GLU ALA TRP SEQRES 20 A 367 PHE ALA GLN ASN TYR ALA ASP PHE LEU LYS SER TYR ASP SEQRES 21 A 367 TRP THR ALA ILE MET ALA MET PRO TYR LEU GLU GLY VAL SEQRES 22 A 367 ALA GLU LYS SER ALA ASP GLN TRP LEU ILE GLN LEU THR SEQRES 23 A 367 ASN GLN ILE LYS ASN ILE PRO GLN ALA LYS ASP LYS SER SEQRES 24 A 367 ILE LEU GLU LEU GLN ALA GLN ASN TRP GLN LYS ASN GLY SEQRES 25 A 367 GLN HIS GLN ALA ILE SER SER GLN GLN LEU ALA HIS TRP SEQRES 26 A 367 MET SER LEU LEU GLN LEU ASN GLY VAL LYS ASN TYR GLY SEQRES 27 A 367 TYR TYR PRO ASP ASN PHE LEU HIS ASN GLN PRO GLU ILE SEQRES 28 A 367 ASP LEU ILE ARG PRO GLU PHE SER THR ALA TRP TYR PRO SEQRES 29 A 367 LYS ASN ASP HET NAG B 1 15 HET NAG B 2 14 HET NAG B 3 14 HET NAG B 4 14 HET EDO A 701 4 HET EDO A 702 4 HET EDO A 703 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *221(H2 O) HELIX 1 AA1 ASN A 328 GLN A 347 1 20 HELIX 2 AA2 ILE A 381 ARG A 392 1 12 HELIX 3 AA3 ASP A 439 ALA A 457 1 19 HELIX 4 AA4 SER A 477 ALA A 487 1 11 HELIX 5 AA5 SER A 492 GLN A 498 1 7 HELIX 6 AA6 GLN A 502 GLY A 530 1 29 HELIX 7 AA7 PHE A 540 GLN A 546 1 7 HELIX 8 AA8 SER A 549 ALA A 554 1 6 HELIX 9 AA9 ASN A 556 TYR A 564 1 9 HELIX 10 AB1 ALA A 579 LYS A 581 5 3 HELIX 11 AB2 SER A 582 ASN A 596 1 15 HELIX 12 AB3 GLN A 599 ASP A 602 5 4 HELIX 13 AB4 SER A 623 ASN A 637 1 15 HELIX 14 AB5 GLU A 655 SER A 664 1 10 SHEET 1 AA1 9 ARG A 315 ILE A 319 0 SHEET 2 AA1 9 THR A 350 GLN A 354 1 O TYR A 352 N ILE A 319 SHEET 3 AA1 9 ASN A 396 MET A 401 1 O TYR A 398 N LEU A 353 SHEET 4 AA1 9 GLY A 461 PHE A 464 1 O GLY A 461 N ALA A 399 SHEET 5 AA1 9 LYS A 534 ILE A 539 1 O ALA A 536 N PHE A 464 SHEET 6 AA1 9 TRP A 566 MET A 570 1 O MET A 570 N ILE A 539 SHEET 7 AA1 9 SER A 604 GLN A 609 1 O GLU A 607 N ILE A 569 SHEET 8 AA1 9 TYR A 642 TYR A 645 1 O GLY A 643 N LEU A 608 SHEET 9 AA1 9 ARG A 315 ILE A 319 1 N HIS A 318 O TYR A 644 SHEET 1 AA2 2 GLN A 611 ASN A 612 0 SHEET 2 AA2 2 GLN A 620 ALA A 621 -1 O GLN A 620 N ASN A 612 LINK O6 NAG B 1 C1 NAG B 2 1555 1555 1.41 LINK O6 NAG B 2 C1 NAG B 3 1555 1555 1.41 LINK O6 NAG B 3 C1 NAG B 4 1555 1555 1.43 CISPEP 1 SER A 312 PRO A 313 0 -4.04 CISPEP 2 GLU A 474 ASP A 475 0 -12.98 CISPEP 3 TYR A 645 PRO A 646 0 -5.83 CISPEP 4 GLN A 653 PRO A 654 0 1.17 CRYST1 42.232 77.786 114.844 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023679 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008707 0.00000