HEADER TRANSCRIPTION 29-MAR-14 4P81 TITLE STRUCTURE OF ANCESTRAL PYRR PROTEIN (ANCORANGEPYRR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANCESTRAL PYRR PROTEIN (ORANGE); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS RNA BINDING PROTEINS, RECONSTRUCTED AMINO ACID SEQUENCE, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR T.PERICA,Y.KONDO,S.TIWARI,S.MCLAUGHLIN,A.STEWARD,N.REUTER,J.CLARKE, AUTHOR 2 S.A.TEICHMANN REVDAT 4 20-DEC-23 4P81 1 REMARK REVDAT 3 31-DEC-14 4P81 1 JRNL REVDAT 2 24-DEC-14 4P81 1 DBREF REVDAT 1 17-DEC-14 4P81 0 JRNL AUTH T.PERICA,Y.KONDO,S.P.TIWARI,S.H.MCLAUGHLIN,K.R.KEMPLEN, JRNL AUTH 2 X.ZHANG,A.STEWARD,N.REUTER,J.CLARKE,S.A.TEICHMANN JRNL TITL EVOLUTION OF OLIGOMERIC STATE THROUGH ALLOSTERIC PATHWAYS JRNL TITL 2 THAT MIMIC LIGAND BINDING. JRNL REF SCIENCE V. 346 54346 2014 JRNL REFN ESSN 1095-9203 JRNL PMID 25525255 JRNL DOI 10.1126/SCIENCE.1254346 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 55721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2914 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4122 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5244 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : -0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.100 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5384 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5546 ; 0.011 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7264 ; 1.823 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12713 ; 1.662 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 672 ; 6.065 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;33.603 ;23.278 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1061 ;15.854 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 67 ;21.234 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 873 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5945 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1110 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2694 ; 2.602 ; 2.438 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2693 ; 2.599 ; 2.438 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3364 ; 3.498 ; 3.630 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3365 ; 3.498 ; 3.631 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2690 ; 4.049 ; 2.993 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2690 ; 4.049 ; 2.993 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3901 ; 6.033 ; 4.277 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 22543 ; 7.474 ;24.037 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 22542 ; 7.474 ;24.037 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 180 B 4 180 10991 0.12 0.05 REMARK 3 2 A 4 179 C 4 179 10421 0.12 0.05 REMARK 3 3 A 4 179 D 4 179 10613 0.13 0.05 REMARK 3 4 B 3 179 C 3 179 10567 0.12 0.05 REMARK 3 5 B 3 180 D 3 180 10793 0.13 0.05 REMARK 3 6 C 2 179 D 2 179 10469 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4P81 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.64600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1A3C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-300, 10% GLYCEROL, 0.1M TRIS REMARK 280 PH 8.5, 5% PEG-8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.95500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.85000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.85000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.95500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 ASP A 75 REMARK 465 ASP A 76 REMARK 465 LEU A 77 REMARK 465 THR A 78 REMARK 465 VAL A 79 REMARK 465 THR A 80 REMARK 465 SER A 81 REMARK 465 ASN A 82 REMARK 465 LYS A 83 REMARK 465 GLU A 84 REMARK 465 PRO A 85 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 ASP B 76 REMARK 465 LEU B 77 REMARK 465 THR B 78 REMARK 465 VAL B 79 REMARK 465 THR B 80 REMARK 465 SER B 81 REMARK 465 ASN B 82 REMARK 465 LYS B 83 REMARK 465 GLU B 84 REMARK 465 GLY C 1 REMARK 465 ARG C 74 REMARK 465 ASP C 75 REMARK 465 ASP C 76 REMARK 465 LEU C 77 REMARK 465 THR C 78 REMARK 465 VAL C 79 REMARK 465 THR C 80 REMARK 465 SER C 81 REMARK 465 ASN C 82 REMARK 465 LYS C 83 REMARK 465 GLU C 84 REMARK 465 PRO C 85 REMARK 465 LEU C 86 REMARK 465 VAL C 87 REMARK 465 LYS C 180 REMARK 465 ASP D 76 REMARK 465 LEU D 77 REMARK 465 THR D 78 REMARK 465 VAL D 79 REMARK 465 THR D 80 REMARK 465 SER D 81 REMARK 465 ASN D 82 REMARK 465 LYS D 83 REMARK 465 GLU D 84 REMARK 465 PRO D 85 REMARK 465 LEU D 86 REMARK 465 VAL D 87 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU C 72 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 342 O HOH C 397 2.01 REMARK 500 O HOH C 392 O HOH C 396 2.09 REMARK 500 NH1 ARG D 54 OE1 GLN D 57 2.10 REMARK 500 OE1 GLU C 179 O HOH C 389 2.15 REMARK 500 O HOH B 332 O HOH B 399 2.16 REMARK 500 O HOH C 359 O HOH C 362 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 24 CD GLU C 24 OE2 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 161 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 141 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP C 106 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP C 173 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP D 106 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 98 19.92 57.05 REMARK 500 TYR A 109 -96.15 -116.12 REMARK 500 TYR B 109 -92.40 -117.98 REMARK 500 LYS C 41 -169.00 61.62 REMARK 500 TYR C 109 -97.94 -115.34 REMARK 500 ASP D 98 18.89 59.78 REMARK 500 TYR D 109 -96.07 -116.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P80 RELATED DB: PDB REMARK 900 RELATED ID: 4P82 RELATED DB: PDB REMARK 900 RELATED ID: 4P83 RELATED DB: PDB REMARK 900 RELATED ID: 4P84 RELATED DB: PDB REMARK 900 RELATED ID: 4P86 RELATED DB: PDB DBREF 4P81 A 1 180 PDB 4P81 4P81 1 180 DBREF 4P81 B 1 180 PDB 4P81 4P81 1 180 DBREF 4P81 C 1 180 PDB 4P81 4P81 1 180 DBREF 4P81 D 1 180 PDB 4P81 4P81 1 180 SEQRES 1 A 180 GLY SER GLN GLU LYS ALA VAL VAL LEU ASP GLU GLN ALA SEQRES 2 A 180 ILE ARG ARG ALA LEU THR ARG ILE ALA HIS GLU ILE ILE SEQRES 3 A 180 GLU ARG ASN LYS GLY VAL ASP ASN CYS VAL LEU VAL GLY SEQRES 4 A 180 ILE LYS THR ARG GLY ILE TYR LEU ALA LYS ARG LEU ALA SEQRES 5 A 180 GLU ARG ILE GLU GLN ILE GLU GLY LYS LYS VAL PRO VAL SEQRES 6 A 180 GLY GLU LEU ASP ILE THR LEU TYR ARG ASP ASP LEU THR SEQRES 7 A 180 VAL THR SER ASN LYS GLU PRO LEU VAL LYS GLY THR ASP SEQRES 8 A 180 ILE PRO VAL ASP ILE THR ASP LYS LYS VAL ILE LEU VAL SEQRES 9 A 180 ASP ASP VAL LEU TYR THR GLY ARG THR VAL ARG ALA ALA SEQRES 10 A 180 MET ASP ALA LEU MET ASP LEU GLY ARG PRO SER GLN ILE SEQRES 11 A 180 GLN LEU ALA VAL LEU VAL ASP ARG GLY HIS ARG GLU LEU SEQRES 12 A 180 PRO ILE ARG ALA ASP TYR VAL GLY LYS ASN VAL PRO THR SEQRES 13 A 180 SER LYS SER GLU ARG ILE VAL VAL GLN LEU SER GLU VAL SEQRES 14 A 180 ASP GLY GLN ASP ARG VAL SER ILE TYR GLU LYS SEQRES 1 B 180 GLY SER GLN GLU LYS ALA VAL VAL LEU ASP GLU GLN ALA SEQRES 2 B 180 ILE ARG ARG ALA LEU THR ARG ILE ALA HIS GLU ILE ILE SEQRES 3 B 180 GLU ARG ASN LYS GLY VAL ASP ASN CYS VAL LEU VAL GLY SEQRES 4 B 180 ILE LYS THR ARG GLY ILE TYR LEU ALA LYS ARG LEU ALA SEQRES 5 B 180 GLU ARG ILE GLU GLN ILE GLU GLY LYS LYS VAL PRO VAL SEQRES 6 B 180 GLY GLU LEU ASP ILE THR LEU TYR ARG ASP ASP LEU THR SEQRES 7 B 180 VAL THR SER ASN LYS GLU PRO LEU VAL LYS GLY THR ASP SEQRES 8 B 180 ILE PRO VAL ASP ILE THR ASP LYS LYS VAL ILE LEU VAL SEQRES 9 B 180 ASP ASP VAL LEU TYR THR GLY ARG THR VAL ARG ALA ALA SEQRES 10 B 180 MET ASP ALA LEU MET ASP LEU GLY ARG PRO SER GLN ILE SEQRES 11 B 180 GLN LEU ALA VAL LEU VAL ASP ARG GLY HIS ARG GLU LEU SEQRES 12 B 180 PRO ILE ARG ALA ASP TYR VAL GLY LYS ASN VAL PRO THR SEQRES 13 B 180 SER LYS SER GLU ARG ILE VAL VAL GLN LEU SER GLU VAL SEQRES 14 B 180 ASP GLY GLN ASP ARG VAL SER ILE TYR GLU LYS SEQRES 1 C 180 GLY SER GLN GLU LYS ALA VAL VAL LEU ASP GLU GLN ALA SEQRES 2 C 180 ILE ARG ARG ALA LEU THR ARG ILE ALA HIS GLU ILE ILE SEQRES 3 C 180 GLU ARG ASN LYS GLY VAL ASP ASN CYS VAL LEU VAL GLY SEQRES 4 C 180 ILE LYS THR ARG GLY ILE TYR LEU ALA LYS ARG LEU ALA SEQRES 5 C 180 GLU ARG ILE GLU GLN ILE GLU GLY LYS LYS VAL PRO VAL SEQRES 6 C 180 GLY GLU LEU ASP ILE THR LEU TYR ARG ASP ASP LEU THR SEQRES 7 C 180 VAL THR SER ASN LYS GLU PRO LEU VAL LYS GLY THR ASP SEQRES 8 C 180 ILE PRO VAL ASP ILE THR ASP LYS LYS VAL ILE LEU VAL SEQRES 9 C 180 ASP ASP VAL LEU TYR THR GLY ARG THR VAL ARG ALA ALA SEQRES 10 C 180 MET ASP ALA LEU MET ASP LEU GLY ARG PRO SER GLN ILE SEQRES 11 C 180 GLN LEU ALA VAL LEU VAL ASP ARG GLY HIS ARG GLU LEU SEQRES 12 C 180 PRO ILE ARG ALA ASP TYR VAL GLY LYS ASN VAL PRO THR SEQRES 13 C 180 SER LYS SER GLU ARG ILE VAL VAL GLN LEU SER GLU VAL SEQRES 14 C 180 ASP GLY GLN ASP ARG VAL SER ILE TYR GLU LYS SEQRES 1 D 180 GLY SER GLN GLU LYS ALA VAL VAL LEU ASP GLU GLN ALA SEQRES 2 D 180 ILE ARG ARG ALA LEU THR ARG ILE ALA HIS GLU ILE ILE SEQRES 3 D 180 GLU ARG ASN LYS GLY VAL ASP ASN CYS VAL LEU VAL GLY SEQRES 4 D 180 ILE LYS THR ARG GLY ILE TYR LEU ALA LYS ARG LEU ALA SEQRES 5 D 180 GLU ARG ILE GLU GLN ILE GLU GLY LYS LYS VAL PRO VAL SEQRES 6 D 180 GLY GLU LEU ASP ILE THR LEU TYR ARG ASP ASP LEU THR SEQRES 7 D 180 VAL THR SER ASN LYS GLU PRO LEU VAL LYS GLY THR ASP SEQRES 8 D 180 ILE PRO VAL ASP ILE THR ASP LYS LYS VAL ILE LEU VAL SEQRES 9 D 180 ASP ASP VAL LEU TYR THR GLY ARG THR VAL ARG ALA ALA SEQRES 10 D 180 MET ASP ALA LEU MET ASP LEU GLY ARG PRO SER GLN ILE SEQRES 11 D 180 GLN LEU ALA VAL LEU VAL ASP ARG GLY HIS ARG GLU LEU SEQRES 12 D 180 PRO ILE ARG ALA ASP TYR VAL GLY LYS ASN VAL PRO THR SEQRES 13 D 180 SER LYS SER GLU ARG ILE VAL VAL GLN LEU SER GLU VAL SEQRES 14 D 180 ASP GLY GLN ASP ARG VAL SER ILE TYR GLU LYS HET SO4 A 201 5 HET SO4 B 201 5 HET SO4 C 201 5 HET GOL C 202 6 HET SO4 D 201 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 4(O4 S 2-) FORMUL 8 GOL C3 H8 O3 FORMUL 10 HOH *382(H2 O) HELIX 1 AA1 ASP A 10 LYS A 30 1 21 HELIX 2 AA2 THR A 42 GLY A 60 1 19 HELIX 3 AA3 GLY A 111 GLY A 125 1 15 HELIX 4 AA4 LEU A 166 GLY A 171 1 6 HELIX 5 AA5 ASP B 10 LYS B 30 1 21 HELIX 6 AA6 THR B 42 GLY B 60 1 19 HELIX 7 AA7 GLY B 111 GLY B 125 1 15 HELIX 8 AA8 LEU B 166 GLY B 171 1 6 HELIX 9 AA9 ASP C 10 LYS C 30 1 21 HELIX 10 AB1 LYS C 41 GLY C 60 1 20 HELIX 11 AB2 GLY C 111 GLY C 125 1 15 HELIX 12 AB3 LEU C 166 GLY C 171 1 6 HELIX 13 AB4 ASP D 10 LYS D 30 1 21 HELIX 14 AB5 THR D 42 GLY D 60 1 19 HELIX 15 AB6 GLY D 111 GLY D 125 1 15 HELIX 16 AB7 LEU D 166 GLY D 171 1 6 SHEET 1 AA1 3 ALA A 6 LEU A 9 0 SHEET 2 AA1 3 ARG A 174 GLU A 179 -1 O ILE A 177 N ALA A 6 SHEET 3 AA1 3 GLU A 160 GLN A 165 -1 N GLN A 165 O ARG A 174 SHEET 1 AA2 6 VAL A 87 ASP A 91 0 SHEET 2 AA2 6 VAL A 65 ILE A 70 -1 N ASP A 69 O GLY A 89 SHEET 3 AA2 6 CYS A 35 ILE A 40 1 N LEU A 37 O GLY A 66 SHEET 4 AA2 6 LYS A 100 LEU A 108 1 O ILE A 102 N VAL A 36 SHEET 5 AA2 6 GLN A 129 ASP A 137 1 O ALA A 133 N LEU A 103 SHEET 6 AA2 6 TYR A 149 ASN A 153 1 O TYR A 149 N VAL A 134 SHEET 1 AA3 3 GLU B 4 LEU B 9 0 SHEET 2 AA3 3 ARG B 174 GLU B 179 -1 O ILE B 177 N LYS B 5 SHEET 3 AA3 3 GLU B 160 GLN B 165 -1 N GLN B 165 O ARG B 174 SHEET 1 AA4 6 VAL B 87 ASP B 91 0 SHEET 2 AA4 6 VAL B 65 ILE B 70 -1 N ASP B 69 O GLY B 89 SHEET 3 AA4 6 CYS B 35 ILE B 40 1 N LEU B 37 O GLY B 66 SHEET 4 AA4 6 LYS B 100 LEU B 108 1 O ILE B 102 N VAL B 36 SHEET 5 AA4 6 GLN B 129 ASP B 137 1 O ALA B 133 N LEU B 103 SHEET 6 AA4 6 TYR B 149 ASN B 153 1 O TYR B 149 N VAL B 134 SHEET 1 AA5 3 GLU C 4 LEU C 9 0 SHEET 2 AA5 3 ARG C 174 TYR C 178 -1 O ILE C 177 N LYS C 5 SHEET 3 AA5 3 ARG C 161 GLN C 165 -1 N GLN C 165 O ARG C 174 SHEET 1 AA6 6 GLY C 89 ASP C 91 0 SHEET 2 AA6 6 VAL C 65 ASP C 69 -1 N ASP C 69 O GLY C 89 SHEET 3 AA6 6 CYS C 35 ILE C 40 1 N LEU C 37 O GLY C 66 SHEET 4 AA6 6 LYS C 100 LEU C 108 1 O ILE C 102 N VAL C 36 SHEET 5 AA6 6 GLN C 129 ASP C 137 1 O ALA C 133 N LEU C 103 SHEET 6 AA6 6 TYR C 149 ASN C 153 1 O TYR C 149 N VAL C 134 SHEET 1 AA7 3 GLN D 3 LEU D 9 0 SHEET 2 AA7 3 ARG D 174 GLU D 179 -1 O ILE D 177 N LYS D 5 SHEET 3 AA7 3 ARG D 161 GLN D 165 -1 N GLN D 165 O ARG D 174 SHEET 1 AA8 6 GLY D 89 ASP D 91 0 SHEET 2 AA8 6 VAL D 65 ASP D 69 -1 N ASP D 69 O GLY D 89 SHEET 3 AA8 6 CYS D 35 ILE D 40 1 N LEU D 37 O GLY D 66 SHEET 4 AA8 6 LYS D 100 LEU D 108 1 O ILE D 102 N VAL D 36 SHEET 5 AA8 6 GLN D 129 ASP D 137 1 O ALA D 133 N LEU D 103 SHEET 6 AA8 6 TYR D 149 ASN D 153 1 O TYR D 149 N VAL D 134 CISPEP 1 LYS A 41 THR A 42 0 -5.89 CISPEP 2 LYS B 41 THR B 42 0 -11.73 CISPEP 3 LYS D 41 THR D 42 0 -6.45 SITE 1 AC1 8 TYR A 73 ARG A 74 TYR A 109 THR A 110 SITE 2 AC1 8 GLY A 111 ARG A 112 THR A 113 HOH A 325 SITE 1 AC2 8 TYR B 73 ARG B 74 TYR B 109 THR B 110 SITE 2 AC2 8 GLY B 111 ARG B 112 THR B 113 HOH B 321 SITE 1 AC3 7 TYR C 109 THR C 110 GLY C 111 ARG C 112 SITE 2 AC3 7 THR C 113 HOH C 320 HOH C 342 SITE 1 AC4 7 ARG D 74 TYR D 109 THR D 110 GLY D 111 SITE 2 AC4 7 ARG D 112 THR D 113 HOH D 313 CRYST1 59.910 102.300 107.700 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009285 0.00000