HEADER HYDROLASE 30-MAR-14 4P87 TITLE CRYSTAL STRUCTURE OF EST-Y29, A NOVEL PENICILLIN-BINDING PROTEIN/BETA- TITLE 2 LACTAMASE HOMOLOG FROM A METAGENOMIC LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: EST-Y29; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METAGENOME; SOURCE 3 ORGANISM_TAXID: 256318; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE KEYWDS HYDROLASE, PENICILLIN-BINDING PROTEIN, BETA-LACTAMASE, METAGENOME EXPDTA X-RAY DIFFRACTION AUTHOR T.D.NGO,B.H.RYU,H.S.JU,E.J.JANG,K.K.KIM,D.H.KIM REVDAT 4 27-DEC-23 4P87 1 SOURCE REMARK REVDAT 3 17-DEC-14 4P87 1 DBREF REVDAT 2 24-SEP-14 4P87 1 JRNL REVDAT 1 10-SEP-14 4P87 0 JRNL AUTH T.D.NGO,B.H.RYU,H.JU,E.J.JANG,K.K.KIM,T.D.KIM JRNL TITL CRYSTALLOGRAPHIC ANALYSIS AND BIOCHEMICAL APPLICATIONS OF A JRNL TITL 2 NOVEL PENICILLIN-BINDING PROTEIN/ BETA-LACTAMASE HOMOLOGUE JRNL TITL 3 FROM A METAGENOMIC LIBRARY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2455 2014 JRNL REFN ESSN 1399-0047 JRNL PMID 25195758 JRNL DOI 10.1107/S1399004714015272 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 72376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3834 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5243 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 286 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6010 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 816 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6193 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8417 ; 1.247 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 775 ; 5.604 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 270 ;35.404 ;23.630 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 983 ;13.101 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;20.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 920 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4754 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3870 ; 0.631 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6212 ; 1.142 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2323 ; 1.958 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2205 ; 3.036 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4P87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76224 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.999 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M SODIUM CITRATE AND 100 MM SODIUM REMARK 280 ACETATE, PH 4.6, EVAPORATION, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.86550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.86550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.91450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.86550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.86550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.91450 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 60.86550 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 60.86550 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 77.91450 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 60.86550 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 60.86550 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 77.91450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 104970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 MET B -11 REMARK 465 ARG B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS B 295 O HOH B 547 2.12 REMARK 500 CE LYS A 295 O HOH A 557 2.17 REMARK 500 CG LYS A 295 O HOH A 557 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 57 -122.91 45.52 REMARK 500 SER A 122 -148.26 -130.77 REMARK 500 ILE A 197 -59.23 -122.73 REMARK 500 HIS A 228 1.71 -150.58 REMARK 500 SER A 279 -21.29 -140.87 REMARK 500 ALA A 306 -56.76 72.16 REMARK 500 ASN A 322 -167.97 -115.07 REMARK 500 TRP A 345 -159.25 -156.68 REMARK 500 ALA A 350 5.93 80.83 REMARK 500 TYR B 57 -118.34 38.58 REMARK 500 SER B 122 -146.27 -132.22 REMARK 500 ILE B 172 8.91 -67.79 REMARK 500 ILE B 197 -54.72 -124.57 REMARK 500 HIS B 228 -5.68 -140.75 REMARK 500 ASP B 252 48.61 -145.46 REMARK 500 HIS B 261 -178.94 -170.76 REMARK 500 SER B 279 -22.82 -143.27 REMARK 500 ASN B 322 -168.50 -116.61 REMARK 500 ALA B 350 9.17 81.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 789 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 904 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 913 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH B 792 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 796 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B 807 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH B 809 DISTANCE = 6.55 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4NP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4NP B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P6B RELATED DB: PDB DBREF 4P87 A -11 389 PDB 4P87 4P87 -11 389 DBREF 4P87 B -11 389 PDB 4P87 4P87 -11 389 SEQRES 1 A 401 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 401 PRO ASP LEU LEU THR ASN VAL ALA GLU ASN TYR VAL ASN SEQRES 3 A 401 GLN ASP LEU PHE ALA GLY ILE GLU TRP ARG ILE ASP GLN SEQRES 4 A 401 ASP GLY LYS PRO ILE PHE GLN GLY CYS ALA GLY VAL LYS SEQRES 5 A 401 ASP ILE GLU THR ARG THR PHE ILE PRO LYS ASN ALA ILE SEQRES 6 A 401 TYR ARG ILE TYR SER MET THR LYS PRO ILE VAL SER PHE SEQRES 7 A 401 LEU ALA MET MET LEU ILE GLU ARG GLY VAL PHE ARG LEU SEQRES 8 A 401 SER SER PRO ILE GLN ASN PHE ASP PRO ARG PHE LYS SER SEQRES 9 A 401 MET LYS VAL ILE ASP GLN HIS ALA HIS ILE GLU PRO ALA SEQRES 10 A 401 THR ALA LEU ILE THR ILE GLU HIS LEU LEU THR HIS GLN SEQRES 11 A 401 ALA GLY PHE SER TYR ASP PHE SER LEU GLY CYS PRO ILE SEQRES 12 A 401 SER ALA HIS TYR ARG ASP ALA GLN LEU ILE GLU ASP GLY SEQRES 13 A 401 GLY ARG ASP LEU THR ASP MET MET GLY VAL LEU ALA GLU SEQRES 14 A 401 LEU PRO LEU VAL PHE HIS PRO GLY THR GLN TRP LYS TYR SEQRES 15 A 401 SER ILE SER THR ASP VAL LEU ALA HIS ILE ILE GLU CYS SEQRES 16 A 401 ALA THR GLY GLU ARG VAL ASP ASP LEU LEU GLN ARG LEU SEQRES 17 A 401 ILE PHE ASP PRO LEU ASP MET GLN ASP THR GLY PHE SER SEQRES 18 A 401 LEU PRO LEU ASP GLY ALA SER ARG LEU MET GLU VAL TYR SEQRES 19 A 401 GLY MET ARG SER LEU HIS GLY LEU PRO ALA LEU LYS PRO SEQRES 20 A 401 ALA PRO HIS VAL LEU VAL PRO ALA ASP LEU GLY SER SER SEQRES 21 A 401 HIS PRO THR ASP ASP PRO ASP PHE ARG ARG GLY GLY HIS SEQRES 22 A 401 GLY LEU TYR SER THR LEU ASP ASP TYR MET ALA PHE ALA SEQRES 23 A 401 ASN MET LEU LEU SER GLY GLN THR PRO GLU GLY GLU THR SEQRES 24 A 401 LEU LEU SER PRO ALA VAL LEU LYS LEU ALA LEU ALA PRO SEQRES 25 A 401 ARG VAL HIS PHE GLY ALA ARG GLY MET ARG ILE ASN ASP SEQRES 26 A 401 GLU PRO PHE ALA GLY TYR SER TRP ASN LEU LEU GLY ARG SEQRES 27 A 401 VAL MET THR ASP VAL GLY ALA ALA ALA TYR ALA THR HIS SEQRES 28 A 401 LEU GLY GLU PHE GLY TRP SER GLY ALA ALA ALA THR TYR SEQRES 29 A 401 PHE TRP VAL ASP PRO THR LYS ASN MET THR GLY CYS VAL SEQRES 30 A 401 MET THR GLN PHE LEU GLY SER GLN HIS PRO ILE GLY SER SEQRES 31 A 401 ASP MET GLN ALA ALA ALA MET SER MET LEU GLY SEQRES 1 B 401 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 B 401 PRO ASP LEU LEU THR ASN VAL ALA GLU ASN TYR VAL ASN SEQRES 3 B 401 GLN ASP LEU PHE ALA GLY ILE GLU TRP ARG ILE ASP GLN SEQRES 4 B 401 ASP GLY LYS PRO ILE PHE GLN GLY CYS ALA GLY VAL LYS SEQRES 5 B 401 ASP ILE GLU THR ARG THR PHE ILE PRO LYS ASN ALA ILE SEQRES 6 B 401 TYR ARG ILE TYR SER MET THR LYS PRO ILE VAL SER PHE SEQRES 7 B 401 LEU ALA MET MET LEU ILE GLU ARG GLY VAL PHE ARG LEU SEQRES 8 B 401 SER SER PRO ILE GLN ASN PHE ASP PRO ARG PHE LYS SER SEQRES 9 B 401 MET LYS VAL ILE ASP GLN HIS ALA HIS ILE GLU PRO ALA SEQRES 10 B 401 THR ALA LEU ILE THR ILE GLU HIS LEU LEU THR HIS GLN SEQRES 11 B 401 ALA GLY PHE SER TYR ASP PHE SER LEU GLY CYS PRO ILE SEQRES 12 B 401 SER ALA HIS TYR ARG ASP ALA GLN LEU ILE GLU ASP GLY SEQRES 13 B 401 GLY ARG ASP LEU THR ASP MET MET GLY VAL LEU ALA GLU SEQRES 14 B 401 LEU PRO LEU VAL PHE HIS PRO GLY THR GLN TRP LYS TYR SEQRES 15 B 401 SER ILE SER THR ASP VAL LEU ALA HIS ILE ILE GLU CYS SEQRES 16 B 401 ALA THR GLY GLU ARG VAL ASP ASP LEU LEU GLN ARG LEU SEQRES 17 B 401 ILE PHE ASP PRO LEU ASP MET GLN ASP THR GLY PHE SER SEQRES 18 B 401 LEU PRO LEU ASP GLY ALA SER ARG LEU MET GLU VAL TYR SEQRES 19 B 401 GLY MET ARG SER LEU HIS GLY LEU PRO ALA LEU LYS PRO SEQRES 20 B 401 ALA PRO HIS VAL LEU VAL PRO ALA ASP LEU GLY SER SER SEQRES 21 B 401 HIS PRO THR ASP ASP PRO ASP PHE ARG ARG GLY GLY HIS SEQRES 22 B 401 GLY LEU TYR SER THR LEU ASP ASP TYR MET ALA PHE ALA SEQRES 23 B 401 ASN MET LEU LEU SER GLY GLN THR PRO GLU GLY GLU THR SEQRES 24 B 401 LEU LEU SER PRO ALA VAL LEU LYS LEU ALA LEU ALA PRO SEQRES 25 B 401 ARG VAL HIS PHE GLY ALA ARG GLY MET ARG ILE ASN ASP SEQRES 26 B 401 GLU PRO PHE ALA GLY TYR SER TRP ASN LEU LEU GLY ARG SEQRES 27 B 401 VAL MET THR ASP VAL GLY ALA ALA ALA TYR ALA THR HIS SEQRES 28 B 401 LEU GLY GLU PHE GLY TRP SER GLY ALA ALA ALA THR TYR SEQRES 29 B 401 PHE TRP VAL ASP PRO THR LYS ASN MET THR GLY CYS VAL SEQRES 30 B 401 MET THR GLN PHE LEU GLY SER GLN HIS PRO ILE GLY SER SEQRES 31 B 401 ASP MET GLN ALA ALA ALA MET SER MET LEU GLY HET 4NP A 401 14 HET 4NP B 401 14 HETNAM 4NP 4-NITROPHENYL PHOSPHATE FORMUL 3 4NP 2(C6 H6 N O6 P) FORMUL 5 HOH *816(H2 O) HELIX 1 AA1 ASP A 3 GLN A 15 1 13 HELIX 2 AA2 MET A 59 ARG A 74 1 16 HELIX 3 AA3 PRO A 82 PHE A 86 5 5 HELIX 4 AA4 ASP A 87 LYS A 91 5 5 HELIX 5 AA5 THR A 110 THR A 116 1 7 HELIX 6 AA6 ILE A 131 GLN A 139 1 9 HELIX 7 AA7 ASP A 147 GLU A 157 1 11 HELIX 8 AA8 ILE A 172 GLY A 186 1 15 HELIX 9 AA9 ARG A 188 ILE A 197 1 10 HELIX 10 AB1 GLY A 214 LEU A 218 5 5 HELIX 11 AB2 LEU A 267 LEU A 277 1 11 HELIX 12 AB3 SER A 290 ALA A 299 1 10 HELIX 13 AB4 ASP A 330 ALA A 334 5 5 HELIX 14 AB5 PRO A 357 LYS A 359 5 3 HELIX 15 AB6 PRO A 375 LEU A 388 1 14 HELIX 16 AB7 ASP B 3 GLN B 15 1 13 HELIX 17 AB8 MET B 59 ARG B 74 1 16 HELIX 18 AB9 PRO B 82 PHE B 86 5 5 HELIX 19 AC1 ASP B 87 LYS B 91 5 5 HELIX 20 AC2 THR B 110 THR B 116 1 7 HELIX 21 AC3 ILE B 131 GLN B 139 1 9 HELIX 22 AC4 ASP B 147 ALA B 156 1 10 HELIX 23 AC5 ILE B 172 GLY B 186 1 15 HELIX 24 AC6 ARG B 188 ILE B 197 1 10 HELIX 25 AC7 GLY B 214 LEU B 218 5 5 HELIX 26 AC8 LEU B 267 LEU B 277 1 11 HELIX 27 AC9 SER B 290 ALA B 299 1 10 HELIX 28 AD1 ASP B 330 ALA B 334 5 5 HELIX 29 AD2 PRO B 357 LYS B 359 5 3 HELIX 30 AD3 PRO B 375 LEU B 388 1 14 SHEET 1 AA1 4 LYS A 30 GLY A 38 0 SHEET 2 AA1 4 GLY A 20 GLN A 27 -1 N ILE A 25 O ILE A 32 SHEET 3 AA1 4 MET A 361 MET A 366 -1 O MET A 366 N GLU A 22 SHEET 4 AA1 4 TYR A 352 ASP A 356 -1 N ASP A 356 O MET A 361 SHEET 1 AA2 2 ILE A 53 ARG A 55 0 SHEET 2 AA2 2 TYR A 264 THR A 266 -1 O SER A 265 N TYR A 54 SHEET 1 AA3 2 LYS A 94 ILE A 96 0 SHEET 2 AA3 2 ILE A 102 PRO A 104 -1 O GLU A 103 N VAL A 95 SHEET 1 AA4 2 MET A 309 ILE A 311 0 SHEET 2 AA4 2 GLU A 314 PHE A 316 -1 O GLU A 314 N ILE A 311 SHEET 1 AA5 3 TYR A 319 TRP A 321 0 SHEET 2 AA5 3 ARG A 326 MET A 328 -1 O VAL A 327 N SER A 320 SHEET 3 AA5 3 PHE A 343 GLY A 344 -1 O GLY A 344 N ARG A 326 SHEET 1 AA6 4 LYS B 30 GLY B 38 0 SHEET 2 AA6 4 GLY B 20 GLN B 27 -1 N ILE B 25 O ILE B 32 SHEET 3 AA6 4 MET B 361 THR B 367 -1 O MET B 366 N GLU B 22 SHEET 4 AA6 4 TYR B 352 ASP B 356 -1 N ASP B 356 O MET B 361 SHEET 1 AA7 2 ILE B 53 ARG B 55 0 SHEET 2 AA7 2 TYR B 264 THR B 266 -1 O SER B 265 N TYR B 54 SHEET 1 AA8 2 LYS B 94 ILE B 96 0 SHEET 2 AA8 2 ILE B 102 PRO B 104 -1 O GLU B 103 N VAL B 95 SHEET 1 AA9 2 TYR B 222 GLY B 223 0 SHEET 2 AA9 2 PHE B 369 LEU B 370 1 O LEU B 370 N TYR B 222 SHEET 1 AB1 2 MET B 309 ILE B 311 0 SHEET 2 AB1 2 GLU B 314 PHE B 316 -1 O GLU B 314 N ILE B 311 SHEET 1 AB2 3 TYR B 319 ASN B 322 0 SHEET 2 AB2 3 GLY B 325 MET B 328 -1 O VAL B 327 N SER B 320 SHEET 3 AB2 3 PHE B 343 GLY B 344 -1 O GLY B 344 N ARG B 326 SITE 1 AC1 11 TYR A 57 SER A 58 TYR A 123 ILE A 141 SITE 2 AC1 11 TYR A 170 ARG A 225 LEU A 227 HIS A 261 SITE 3 AC1 11 GLY A 347 ALA A 348 HOH A 674 SITE 1 AC2 9 TYR B 57 SER B 58 TYR B 123 ILE B 141 SITE 2 AC2 9 TYR B 170 ARG B 225 LEU B 227 HIS B 261 SITE 3 AC2 9 ALA B 348 CRYST1 121.731 121.731 155.829 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008215 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006417 0.00000