HEADER TRANSPORT PROTEIN 31-MAR-14 4P8B TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 RALSTONIA EUTROPHA H16 (H16_A1328), TARGET EFI-510189, WITH BOUND TITLE 3 (S)-2-HYDROXY-2-METHYL-3-OXOBUTANOATE ((S)-2-ACETOLACTATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP-TYPE TRANSPORTER, PERIPLASMIC COMPONENT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRAP PERIPLASMIC SOLUTE BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUPRIAVIDUS NECATOR; SOURCE 3 ORGANISM_TAXID: 381666; SOURCE 4 STRAIN: ATCC 17699 / H16 / DSM 428 / STANIER 337; SOURCE 5 GENE: H16_A1328, H16_A1328; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 5 27-DEC-23 4P8B 1 REMARK REVDAT 4 25-DEC-19 4P8B 1 REMARK REVDAT 3 20-SEP-17 4P8B 1 SOURCE KEYWDS JRNL REMARK REVDAT 2 25-FEB-15 4P8B 1 JRNL REVDAT 1 07-MAY-14 4P8B 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 137239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 6934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.4995 - 4.0350 0.96 4267 199 0.1349 0.1669 REMARK 3 2 4.0350 - 3.2044 1.00 4412 222 0.1336 0.1539 REMARK 3 3 3.2044 - 2.7999 1.00 4382 232 0.1506 0.1630 REMARK 3 4 2.7999 - 2.5441 1.00 4389 268 0.1456 0.1608 REMARK 3 5 2.5441 - 2.3619 1.00 4390 238 0.1334 0.1523 REMARK 3 6 2.3619 - 2.2227 1.00 4346 278 0.1346 0.1566 REMARK 3 7 2.2227 - 2.1114 1.00 4370 244 0.1342 0.1575 REMARK 3 8 2.1114 - 2.0196 0.99 4375 214 0.1402 0.1335 REMARK 3 9 2.0196 - 1.9418 1.00 4448 222 0.1445 0.1713 REMARK 3 10 1.9418 - 1.8749 0.99 4349 238 0.1527 0.1611 REMARK 3 11 1.8749 - 1.8162 0.99 4338 226 0.1522 0.1606 REMARK 3 12 1.8162 - 1.7643 1.00 4443 240 0.1468 0.1834 REMARK 3 13 1.7643 - 1.7179 0.99 4362 222 0.1508 0.1636 REMARK 3 14 1.7179 - 1.6760 1.00 4348 228 0.1520 0.1720 REMARK 3 15 1.6760 - 1.6379 0.98 4293 250 0.1543 0.1959 REMARK 3 16 1.6379 - 1.6031 0.99 4379 255 0.1598 0.1787 REMARK 3 17 1.6031 - 1.5710 0.98 4266 246 0.1667 0.1980 REMARK 3 18 1.5710 - 1.5413 1.00 4370 236 0.1670 0.2092 REMARK 3 19 1.5413 - 1.5138 0.97 4344 216 0.1733 0.1668 REMARK 3 20 1.5138 - 1.4882 1.00 4375 185 0.1848 0.2109 REMARK 3 21 1.4882 - 1.4642 0.97 4392 184 0.1893 0.2249 REMARK 3 22 1.4642 - 1.4416 0.99 4326 232 0.2026 0.2113 REMARK 3 23 1.4416 - 1.4204 0.98 4332 260 0.2102 0.2101 REMARK 3 24 1.4204 - 1.4004 0.97 4318 214 0.2181 0.2471 REMARK 3 25 1.4004 - 1.3815 1.00 4329 244 0.2227 0.2952 REMARK 3 26 1.3815 - 1.3636 0.97 4252 272 0.2375 0.2842 REMARK 3 27 1.3636 - 1.3465 0.97 4222 215 0.2462 0.2588 REMARK 3 28 1.3465 - 1.3303 0.99 4409 212 0.2536 0.3205 REMARK 3 29 1.3303 - 1.3148 0.97 4295 222 0.2505 0.2681 REMARK 3 30 1.3148 - 1.3001 0.97 4184 220 0.2590 0.2293 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2537 REMARK 3 ANGLE : 1.246 3454 REMARK 3 CHIRALITY : 0.070 376 REMARK 3 PLANARITY : 0.007 449 REMARK 3 DIHEDRAL : 13.127 927 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0922 55.9344 4.2952 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.0973 REMARK 3 T33: 0.2770 T12: 0.0362 REMARK 3 T13: 0.0264 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 1.1902 L22: 1.5048 REMARK 3 L33: 0.4836 L12: -0.2883 REMARK 3 L13: -0.4645 L23: -0.3814 REMARK 3 S TENSOR REMARK 3 S11: -0.1969 S12: -0.0998 S13: -0.4328 REMARK 3 S21: 0.0552 S22: -0.0079 S23: -0.2891 REMARK 3 S31: 0.2224 S32: 0.1489 S33: 0.0939 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8445 61.6232 0.5971 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: 0.0775 REMARK 3 T33: 0.0859 T12: -0.0157 REMARK 3 T13: 0.0156 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 1.7600 L22: 1.6000 REMARK 3 L33: 0.7074 L12: 0.0985 REMARK 3 L13: -0.2109 L23: -0.2285 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: 0.0797 S13: -0.2848 REMARK 3 S21: -0.0460 S22: -0.0098 S23: 0.0319 REMARK 3 S31: 0.1431 S32: -0.1002 S33: 0.0638 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3519 84.8518 -7.1032 REMARK 3 T TENSOR REMARK 3 T11: 0.1196 T22: 0.1327 REMARK 3 T33: 0.1306 T12: 0.0135 REMARK 3 T13: 0.0027 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 2.9063 L22: 3.3923 REMARK 3 L33: 2.2098 L12: -1.1162 REMARK 3 L13: -0.2061 L23: 0.7389 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: 0.3212 S13: 0.2783 REMARK 3 S21: -0.3182 S22: -0.1434 S23: 0.1408 REMARK 3 S31: -0.1939 S32: -0.1617 S33: 0.0356 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9742 76.0738 -12.0355 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.1741 REMARK 3 T33: 0.0662 T12: -0.0048 REMARK 3 T13: 0.0226 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 4.6089 L22: 2.0557 REMARK 3 L33: 2.0737 L12: -1.1700 REMARK 3 L13: 1.4749 L23: -0.7619 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: 0.4825 S13: 0.1453 REMARK 3 S21: -0.3840 S22: -0.0062 S23: -0.1257 REMARK 3 S31: 0.0555 S32: -0.0291 S33: 0.0195 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9816 66.0960 3.8355 REMARK 3 T TENSOR REMARK 3 T11: 0.0872 T22: 0.0564 REMARK 3 T33: 0.1206 T12: 0.0081 REMARK 3 T13: 0.0026 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.7127 L22: 1.7087 REMARK 3 L33: 1.1290 L12: -0.3175 REMARK 3 L13: -0.5829 L23: -0.2837 REMARK 3 S TENSOR REMARK 3 S11: -0.1186 S12: -0.0560 S13: -0.2139 REMARK 3 S21: 0.0111 S22: -0.0373 S23: -0.2720 REMARK 3 S31: 0.1626 S32: 0.0933 S33: 0.0690 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4402 82.6510 11.3648 REMARK 3 T TENSOR REMARK 3 T11: 0.1952 T22: 0.1510 REMARK 3 T33: 0.1442 T12: -0.0030 REMARK 3 T13: 0.0188 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 1.3588 L22: 2.8672 REMARK 3 L33: 1.1798 L12: -0.5107 REMARK 3 L13: 0.9046 L23: -0.5106 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: -0.3269 S13: 0.2336 REMARK 3 S21: 0.6668 S22: 0.0204 S23: 0.1148 REMARK 3 S31: -0.1733 S32: -0.1561 S33: 0.0092 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8134 70.5928 -3.8122 REMARK 3 T TENSOR REMARK 3 T11: 0.0851 T22: 0.1670 REMARK 3 T33: 0.1606 T12: -0.0117 REMARK 3 T13: -0.0233 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 1.8324 L22: 3.0626 REMARK 3 L33: 0.9351 L12: 0.9099 REMARK 3 L13: -0.1027 L23: -1.1296 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.0942 S13: 0.2357 REMARK 3 S21: -0.1676 S22: 0.0827 S23: 0.4582 REMARK 3 S31: 0.1035 S32: -0.1182 S33: -0.0652 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68680 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.83800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (35.72 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT); RESERVOIR (0.1 M HEPES PH 7.0, 30 %(V/V) REMARK 280 JEFFAMINE ED-2001 PH 7.0); CRYOPROTECTION (RESERVOIR, PAUSE 5 REMARK 280 SECS IN AIR, PRIOR TO VITRIFICATION IN LIQUID NITROGEN), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.09650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.47023 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.85967 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 70.09650 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 40.47023 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.85967 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 70.09650 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 40.47023 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.85967 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.94047 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.71933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 80.94047 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.71933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 80.94047 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.71933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 MSE A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ILE A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 PHE A 19 REMARK 465 ALA A 20 REMARK 465 PRO A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 MSE A 25 REMARK 465 ALA A 26 REMARK 465 GLN A 27 REMARK 465 THR A 28 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 318 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 300 O HOH A 501 1.54 REMARK 500 NZ LYS A 300 O HOH A 501 1.92 REMARK 500 O HOH A 570 O HOH A 827 2.01 REMARK 500 O HOH A 756 O HOH A 883 2.14 REMARK 500 O HOH A 847 O HOH A 884 2.15 REMARK 500 O HOH A 761 O HOH A 827 2.16 REMARK 500 O HOH A 712 O HOH A 877 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 152 -65.28 -91.19 REMARK 500 ALA A 284 46.72 -88.66 REMARK 500 ALA A 288 74.23 23.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 820 DISTANCE = 6.14 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue X2X A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510189 RELATED DB: TARGETTRACK DBREF 4P8B A 1 342 UNP Q0KC03 Q0KC03_CUPNH 1 342 SEQRES 1 A 342 MSE LYS ARG ARG ALA LEU MSE LEU ALA THR ALA ALA ALA SEQRES 2 A 342 ILE ALA ALA SER ALA PHE ALA PRO ALA GLY ALA MSE ALA SEQRES 3 A 342 GLN THR TYR LYS SER GLU TYR LYS MSE SER LEU VAL LEU SEQRES 4 A 342 GLY PRO ALA PHE PRO TRP GLY LYS GLY GLY GLU ILE TRP SEQRES 5 A 342 ALA ASP LEU VAL LYS GLN ARG THR ASN GLY ARG ILE ASN SEQRES 6 A 342 ILE LYS LEU TYR PRO GLY THR SER LEU VAL ALA GLY ASP SEQRES 7 A 342 GLN THR ARG GLU PHE SER ALA ILE ARG GLN GLY VAL ILE SEQRES 8 A 342 ASP MSE ALA VAL GLY SER THR ILE ASN TRP SER PRO GLN SEQRES 9 A 342 VAL ARG GLU LEU ASN LEU PHE SER LEU PRO PHE LEU MSE SEQRES 10 A 342 PRO ASP TYR LYS ALA LEU ASP ALA LEU THR GLN GLY GLU SEQRES 11 A 342 VAL GLY LYS SER ILE PHE ALA THR LEU GLU LYS ALA GLY SEQRES 12 A 342 VAL VAL PRO LEU ALA TRP GLY GLU ASN GLY PHE ARG GLU SEQRES 13 A 342 VAL SER ASN SER LYS ARG GLU ILE ARG LYS PRO GLU ASP SEQRES 14 A 342 LEU LYS GLY MSE LYS LEU ARG VAL VAL GLY SER PRO LEU SEQRES 15 A 342 TYR ILE GLU THR PHE ASN ALA LEU GLY ALA ASN PRO THR SEQRES 16 A 342 GLN MSE SER TRP ALA ASP ALA GLN PRO ALA MSE ALA SER SEQRES 17 A 342 GLY ALA VAL ASP GLY GLN GLU ASN PRO GLN SER VAL PHE SEQRES 18 A 342 ALA ALA ALA LYS LEU TYR THR VAL GLY GLN LYS PHE VAL SEQRES 19 A 342 THR THR TRP GLY TYR VAL ALA ASP PRO LEU ILE PHE VAL SEQRES 20 A 342 VAL ASN LYS GLN ILE TRP GLU SER TRP THR PRO ALA ASP SEQRES 21 A 342 ARG GLU ILE VAL LYS GLN ALA ALA VAL ASP ALA GLY LYS SEQRES 22 A 342 GLN GLU ILE ALA LEU ALA ARG LYS GLY LEU ALA GLU PRO SEQRES 23 A 342 GLY ALA PRO ALA TRP LYS ASP MSE GLU ALA HIS GLY VAL SEQRES 24 A 342 LYS VAL THR HIS LEU THR PRO ALA GLU HIS ASP ALA PHE SEQRES 25 A 342 ARG LYS ALA THR ALA LYS VAL TYR ASP LYS TRP LYS LYS SEQRES 26 A 342 GLN ILE GLY THR ASP LEU VAL THR LYS ALA GLU GLY ALA SEQRES 27 A 342 ILE ALA LYS ARG MODRES 4P8B MSE A 35 MET MODIFIED RESIDUE MODRES 4P8B MSE A 93 MET MODIFIED RESIDUE MODRES 4P8B MSE A 117 MET MODIFIED RESIDUE MODRES 4P8B MSE A 173 MET MODIFIED RESIDUE MODRES 4P8B MSE A 197 MET MODIFIED RESIDUE MODRES 4P8B MSE A 206 MET MODIFIED RESIDUE MODRES 4P8B MSE A 294 MET MODIFIED RESIDUE HET MSE A 35 17 HET MSE A 93 17 HET MSE A 117 17 HET MSE A 173 17 HET MSE A 197 17 HET MSE A 206 17 HET MSE A 294 17 HET CL A 401 1 HET CL A 402 1 HET X2X A 403 9 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM X2X (2S)-2-HYDROXY-2-METHYL-3-OXOBUTANOIC ACID FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 CL 2(CL 1-) FORMUL 4 X2X C5 H8 O4 FORMUL 5 HOH *415(H2 O) HELIX 1 AA1 PHE A 43 THR A 60 1 18 HELIX 2 AA2 PRO A 70 ALA A 76 5 7 HELIX 3 AA3 ASP A 78 THR A 80 5 3 HELIX 4 AA4 ARG A 81 GLN A 88 1 8 HELIX 5 AA5 THR A 98 SER A 102 1 5 HELIX 6 AA6 VAL A 105 LEU A 113 5 9 HELIX 7 AA7 ASP A 119 GLN A 128 1 10 HELIX 8 AA8 GLY A 129 ALA A 142 1 14 HELIX 9 AA9 LYS A 166 LYS A 171 5 6 HELIX 10 AB1 SER A 180 LEU A 190 1 11 HELIX 11 AB2 SER A 198 SER A 208 1 11 HELIX 12 AB3 PRO A 217 ALA A 224 1 8 HELIX 13 AB4 LYS A 225 GLY A 230 5 6 HELIX 14 AB5 LYS A 250 TRP A 256 1 7 HELIX 15 AB6 THR A 257 ARG A 280 1 24 HELIX 16 AB7 ALA A 288 ALA A 296 1 9 HELIX 17 AB8 THR A 305 THR A 316 1 12 HELIX 18 AB9 THR A 316 GLY A 328 1 13 HELIX 19 AC1 GLY A 328 LYS A 341 1 14 SHEET 1 AA1 5 ILE A 66 TYR A 69 0 SHEET 2 AA1 5 TYR A 33 SER A 36 1 N TYR A 33 O LYS A 67 SHEET 3 AA1 5 MSE A 93 SER A 97 1 O MSE A 93 N SER A 36 SHEET 4 AA1 5 ALA A 241 ASN A 249 -1 O VAL A 247 N ALA A 94 SHEET 5 AA1 5 VAL A 144 PHE A 154 -1 N LEU A 147 O PHE A 246 SHEET 1 AA2 4 GLY A 213 ASN A 216 0 SHEET 2 AA2 4 GLU A 156 ASN A 159 -1 N SER A 158 O GLN A 214 SHEET 3 AA2 4 PHE A 233 THR A 235 -1 O THR A 235 N VAL A 157 SHEET 4 AA2 4 LYS A 300 THR A 302 1 O THR A 302 N VAL A 234 SHEET 1 AA3 2 LYS A 174 VAL A 177 0 SHEET 2 AA3 2 ASN A 193 GLN A 196 1 O THR A 195 N VAL A 177 LINK C LYS A 34 N MSE A 35 1555 1555 1.34 LINK C MSE A 35 N SER A 36 1555 1555 1.32 LINK C ASP A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N ALA A 94 1555 1555 1.32 LINK C LEU A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N PRO A 118 1555 1555 1.33 LINK C GLY A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N LYS A 174 1555 1555 1.33 LINK C GLN A 196 N MSE A 197 1555 1555 1.33 LINK C MSE A 197 N SER A 198 1555 1555 1.33 LINK C ALA A 205 N MSE A 206 1555 1555 1.33 LINK C MSE A 206 N ALA A 207 1555 1555 1.33 LINK C ASP A 293 N MSE A 294 1555 1555 1.32 LINK C MSE A 294 N GLU A 295 1555 1555 1.33 SITE 1 AC1 6 GLY A 40 PRO A 41 ALA A 42 HOH A 611 SITE 2 AC1 6 HOH A 642 HOH A 806 SITE 1 AC2 3 ASP A 119 TYR A 120 LYS A 121 SITE 1 AC3 9 TRP A 45 GLN A 79 ASN A 100 ASN A 152 SITE 2 AC3 9 ARG A 155 ARG A 176 VAL A 178 TRP A 199 SITE 3 AC3 9 ASN A 216 CRYST1 140.193 140.193 38.579 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007133 0.004118 0.000000 0.00000 SCALE2 0.000000 0.008237 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025921 0.00000