HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 31-MAR-14 4P8C
TITLE CRYSTAL STRUCTURE OF M. TUBERCULOSIS DPRE1 IN COMPLEX WITH THE NON-
TITLE 2 COVALENT INHIBITOR QN127
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROBABLE DECAPRENYLPHOSPHORYL-BETA-D-RIBOSE OXIDASE;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: DPRE1;
COMPND 5 EC: 1.-.-.-;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS;
SOURCE 3 ORGANISM_TAXID: 83332;
SOURCE 4 STRAIN: H37RV;
SOURCE 5 GENE: DPRE1, RV3790, MT3898;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B
KEYWDS DPRE1, INHIBITOR, COMPLEX, NON-COVALENT, OXIDOREDUCTASE-
KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.NERES,F.POJER,S.T.COLE
REVDAT 4 27-SEP-23 4P8C 1 REMARK
REVDAT 3 22-NOV-17 4P8C 1 SOURCE REMARK
REVDAT 2 01-APR-15 4P8C 1 JRNL
REVDAT 1 10-DEC-14 4P8C 0
JRNL AUTH J.NERES,R.C.HARTKOORN,L.R.CHIARELLI,R.GADUPUDI,M.R.PASCA,
JRNL AUTH 2 G.MORI,A.VENTURELLI,S.SAVINA,V.MAKAROV,G.S.KOLLY,E.MOLTENI,
JRNL AUTH 3 C.BINDA,N.DHAR,S.FERRARI,P.BRODIN,V.DELORME,V.LANDRY,
JRNL AUTH 4 A.L.DE JESUS LOPES RIBEIRO,D.FARINA,P.SAXENA,F.POJER,
JRNL AUTH 5 A.CARTA,R.LUCIANI,A.PORTA,G.ZANONI,E.DE ROSSI,M.P.COSTI,
JRNL AUTH 6 G.RICCARDI,S.T.COLE
JRNL TITL 2-CARBOXYQUINOXALINES KILL MYCOBACTERIUM TUBERCULOSIS
JRNL TITL 2 THROUGH NONCOVALENT INHIBITION OF DPRE1.
JRNL REF ACS CHEM.BIOL. V. 10 705 2015
JRNL REFN ESSN 1554-8937
JRNL PMID 25427196
JRNL DOI 10.1021/CB5007163
REMARK 2
REMARK 2 RESOLUTION. 1.95 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.6.0117
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.24
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9
REMARK 3 NUMBER OF REFLECTIONS : 68581
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.204
REMARK 3 R VALUE (WORKING SET) : 0.202
REMARK 3 FREE R VALUE : 0.239
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 3640
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00
REMARK 3 REFLECTION IN BIN (WORKING SET) : 4686
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.06
REMARK 3 BIN R VALUE (WORKING SET) : 0.3100
REMARK 3 BIN FREE R VALUE SET COUNT : 243
REMARK 3 BIN FREE R VALUE : 0.3620
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 6654
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 182
REMARK 3 SOLVENT ATOMS : 236
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.34
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.00000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.170
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.174
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7023 ; 0.007 ; 0.020
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9567 ; 1.211 ; 1.985
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 863 ; 5.482 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 297 ;31.844 ;22.626
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1079 ;15.154 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;15.694 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1049 ; 0.080 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5353 ; 0.005 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN
REMARK 3 THE INPUT
REMARK 4
REMARK 4 4P8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-14.
REMARK 100 THE DEPOSITION ID IS D_1000200893.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-DEC-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06DA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR WITH DUAL
REMARK 200 CHANNEL CUT CRYSTALS
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : XDS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 135575
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950
REMARK 200 RESOLUTION RANGE LOW (A) : 49.240
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5
REMARK 200 DATA REDUNDANCY : 1.982
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1800
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07
REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0
REMARK 200 DATA REDUNDANCY IN SHELL : 1.98
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.180
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4FDP
REMARK 200
REMARK 200 REMARK: RMEAS 0.043 (OVERALL), 0.523 (OUTER SHELL)
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 50.07
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 34% POLYPROPYLENEGLYCOL 400, 100 MM
REMARK 280 IMIDAZOLE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE
REMARK 280 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.07900
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -18
REMARK 465 SER A -17
REMARK 465 SER A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 HIS A -12
REMARK 465 HIS A -11
REMARK 465 HIS A -10
REMARK 465 SER A -9
REMARK 465 SER A -8
REMARK 465 GLY A -7
REMARK 465 LEU A -6
REMARK 465 VAL A -5
REMARK 465 PRO A -4
REMARK 465 ARG A -3
REMARK 465 GLY A -2
REMARK 465 SER A -1
REMARK 465 HIS A 0
REMARK 465 MET A 1
REMARK 465 LEU A 2
REMARK 465 SER A 3
REMARK 465 VAL A 4
REMARK 465 GLY A 5
REMARK 465 ALA A 6
REMARK 465 ALA A 269
REMARK 465 PRO A 270
REMARK 465 GLN A 271
REMARK 465 LEU A 272
REMARK 465 LEU A 273
REMARK 465 ASN A 324
REMARK 465 ARG A 325
REMARK 465 GLY B -18
REMARK 465 SER B -17
REMARK 465 SER B -16
REMARK 465 HIS B -15
REMARK 465 HIS B -14
REMARK 465 HIS B -13
REMARK 465 HIS B -12
REMARK 465 HIS B -11
REMARK 465 HIS B -10
REMARK 465 SER B -9
REMARK 465 SER B -8
REMARK 465 GLY B -7
REMARK 465 LEU B -6
REMARK 465 VAL B -5
REMARK 465 PRO B -4
REMARK 465 ARG B -3
REMARK 465 GLY B -2
REMARK 465 SER B -1
REMARK 465 HIS B 0
REMARK 465 MET B 1
REMARK 465 LEU B 2
REMARK 465 SER B 3
REMARK 465 VAL B 4
REMARK 465 GLY B 5
REMARK 465 ALA B 6
REMARK 465 THR B 7
REMARK 465 GLN B 271
REMARK 465 LEU B 272
REMARK 465 LEU B 273
REMARK 465 THR B 274
REMARK 465 LEU B 275
REMARK 465 PRO B 276
REMARK 465 ASP B 277
REMARK 465 VAL B 278
REMARK 465 PHE B 279
REMARK 465 PRO B 280
REMARK 465 ASN B 281
REMARK 465 GLY B 282
REMARK 465 LEU B 283
REMARK 465 ALA B 284
REMARK 465 ASN B 285
REMARK 465 LYS B 286
REMARK 465 TYR B 287
REMARK 465 THR B 288
REMARK 465 PHE B 289
REMARK 465 GLY B 290
REMARK 465 PRO B 291
REMARK 465 ILE B 292
REMARK 465 GLY B 293
REMARK 465 LEU B 317
REMARK 465 ASP B 318
REMARK 465 MET B 319
REMARK 465 PHE B 320
REMARK 465 GLY B 321
REMARK 465 GLU B 322
REMARK 465 TRP B 323
REMARK 465 ASN B 324
REMARK 465 ARG B 325
REMARK 465 ALA B 326
REMARK 465 TYR B 327
REMARK 465 GLY B 328
REMARK 465 PRO B 329
REMARK 465 ALA B 330
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 155 2.25 -67.35
REMARK 500 PRO A 329 -126.64 -74.31
REMARK 500 ARG A 421 -2.20 -140.03
REMARK 500 ALA B 20 72.94 49.91
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue Y22 A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 2J3 A 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue Y22 B 502
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4P8H RELATED DB: PDB
REMARK 900 RELATED ID: 4P8K RELATED DB: PDB
REMARK 900 RELATED ID: 4P8L RELATED DB: PDB
REMARK 900 RELATED ID: 4P8M RELATED DB: PDB
REMARK 900 RELATED ID: 4P8N RELATED DB: PDB
REMARK 900 RELATED ID: 4P8P RELATED DB: PDB
REMARK 900 RELATED ID: 4P8T RELATED DB: PDB
REMARK 900 RELATED ID: 4P8Y RELATED DB: PDB
DBREF 4P8C A 1 461 UNP P72056 DPRE1_MYCTU 1 461
DBREF 4P8C B 1 461 UNP P72056 DPRE1_MYCTU 1 461
SEQRES 1 A 480 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU
SEQRES 2 A 480 VAL PRO ARG GLY SER HIS MET LEU SER VAL GLY ALA THR
SEQRES 3 A 480 THR THR ALA THR ARG LEU THR GLY TRP GLY ARG THR ALA
SEQRES 4 A 480 PRO SER VAL ALA ASN VAL LEU ARG THR PRO ASP ALA GLU
SEQRES 5 A 480 MET ILE VAL LYS ALA VAL ALA ARG VAL ALA GLU SER GLY
SEQRES 6 A 480 GLY GLY ARG GLY ALA ILE ALA ARG GLY LEU GLY ARG SER
SEQRES 7 A 480 TYR GLY ASP ASN ALA GLN ASN GLY GLY GLY LEU VAL ILE
SEQRES 8 A 480 ASP MET THR PRO LEU ASN THR ILE HIS SER ILE ASP ALA
SEQRES 9 A 480 ASP THR LYS LEU VAL ASP ILE ASP ALA GLY VAL ASN LEU
SEQRES 10 A 480 ASP GLN LEU MET LYS ALA ALA LEU PRO PHE GLY LEU TRP
SEQRES 11 A 480 VAL PRO VAL LEU PRO GLY THR ARG GLN VAL THR VAL GLY
SEQRES 12 A 480 GLY ALA ILE ALA CYS ASP ILE HIS GLY LYS ASN HIS HIS
SEQRES 13 A 480 SER ALA GLY SER PHE GLY ASN HIS VAL ARG SER MET ASP
SEQRES 14 A 480 LEU LEU THR ALA ASP GLY GLU ILE ARG HIS LEU THR PRO
SEQRES 15 A 480 THR GLY GLU ASP ALA GLU LEU PHE TRP ALA THR VAL GLY
SEQRES 16 A 480 GLY ASN GLY LEU THR GLY ILE ILE MET ARG ALA THR ILE
SEQRES 17 A 480 GLU MET THR PRO THR SER THR ALA TYR PHE ILE ALA ASP
SEQRES 18 A 480 GLY ASP VAL THR ALA SER LEU ASP GLU THR ILE ALA LEU
SEQRES 19 A 480 HIS SER ASP GLY SER GLU ALA ARG TYR THR TYR SER SER
SEQRES 20 A 480 ALA TRP PHE ASP ALA ILE SER ALA PRO PRO LYS LEU GLY
SEQRES 21 A 480 ARG ALA ALA VAL SER ARG GLY ARG LEU ALA THR VAL GLU
SEQRES 22 A 480 GLN LEU PRO ALA LYS LEU ARG SER GLU PRO LEU LYS PHE
SEQRES 23 A 480 ASP ALA PRO GLN LEU LEU THR LEU PRO ASP VAL PHE PRO
SEQRES 24 A 480 ASN GLY LEU ALA ASN LYS TYR THR PHE GLY PRO ILE GLY
SEQRES 25 A 480 GLU LEU TRP TYR ARG LYS SER GLY THR TYR ARG GLY LYS
SEQRES 26 A 480 VAL GLN ASN LEU THR GLN PHE TYR HIS PRO LEU ASP MET
SEQRES 27 A 480 PHE GLY GLU TRP ASN ARG ALA TYR GLY PRO ALA GLY PHE
SEQRES 28 A 480 LEU GLN TYR GLN PHE VAL ILE PRO THR GLU ALA VAL ASP
SEQRES 29 A 480 GLU PHE LYS LYS ILE ILE GLY VAL ILE GLN ALA SER GLY
SEQRES 30 A 480 HIS TYR SER PHE LEU ASN VAL PHE LYS LEU PHE GLY PRO
SEQRES 31 A 480 ARG ASN GLN ALA PRO LEU SER PHE PRO ILE PRO GLY TRP
SEQRES 32 A 480 ASN ILE CYS VAL ASP PHE PRO ILE LYS ASP GLY LEU GLY
SEQRES 33 A 480 LYS PHE VAL SER GLU LEU ASP ARG ARG VAL LEU GLU PHE
SEQRES 34 A 480 GLY GLY ARG LEU TYR THR ALA LYS ASP SER ARG THR THR
SEQRES 35 A 480 ALA GLU THR PHE HIS ALA MET TYR PRO ARG VAL ASP GLU
SEQRES 36 A 480 TRP ILE SER VAL ARG ARG LYS VAL ASP PRO LEU ARG VAL
SEQRES 37 A 480 PHE ALA SER ASP MET ALA ARG ARG LEU GLU LEU LEU
SEQRES 1 B 480 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU
SEQRES 2 B 480 VAL PRO ARG GLY SER HIS MET LEU SER VAL GLY ALA THR
SEQRES 3 B 480 THR THR ALA THR ARG LEU THR GLY TRP GLY ARG THR ALA
SEQRES 4 B 480 PRO SER VAL ALA ASN VAL LEU ARG THR PRO ASP ALA GLU
SEQRES 5 B 480 MET ILE VAL LYS ALA VAL ALA ARG VAL ALA GLU SER GLY
SEQRES 6 B 480 GLY GLY ARG GLY ALA ILE ALA ARG GLY LEU GLY ARG SER
SEQRES 7 B 480 TYR GLY ASP ASN ALA GLN ASN GLY GLY GLY LEU VAL ILE
SEQRES 8 B 480 ASP MET THR PRO LEU ASN THR ILE HIS SER ILE ASP ALA
SEQRES 9 B 480 ASP THR LYS LEU VAL ASP ILE ASP ALA GLY VAL ASN LEU
SEQRES 10 B 480 ASP GLN LEU MET LYS ALA ALA LEU PRO PHE GLY LEU TRP
SEQRES 11 B 480 VAL PRO VAL LEU PRO GLY THR ARG GLN VAL THR VAL GLY
SEQRES 12 B 480 GLY ALA ILE ALA CYS ASP ILE HIS GLY LYS ASN HIS HIS
SEQRES 13 B 480 SER ALA GLY SER PHE GLY ASN HIS VAL ARG SER MET ASP
SEQRES 14 B 480 LEU LEU THR ALA ASP GLY GLU ILE ARG HIS LEU THR PRO
SEQRES 15 B 480 THR GLY GLU ASP ALA GLU LEU PHE TRP ALA THR VAL GLY
SEQRES 16 B 480 GLY ASN GLY LEU THR GLY ILE ILE MET ARG ALA THR ILE
SEQRES 17 B 480 GLU MET THR PRO THR SER THR ALA TYR PHE ILE ALA ASP
SEQRES 18 B 480 GLY ASP VAL THR ALA SER LEU ASP GLU THR ILE ALA LEU
SEQRES 19 B 480 HIS SER ASP GLY SER GLU ALA ARG TYR THR TYR SER SER
SEQRES 20 B 480 ALA TRP PHE ASP ALA ILE SER ALA PRO PRO LYS LEU GLY
SEQRES 21 B 480 ARG ALA ALA VAL SER ARG GLY ARG LEU ALA THR VAL GLU
SEQRES 22 B 480 GLN LEU PRO ALA LYS LEU ARG SER GLU PRO LEU LYS PHE
SEQRES 23 B 480 ASP ALA PRO GLN LEU LEU THR LEU PRO ASP VAL PHE PRO
SEQRES 24 B 480 ASN GLY LEU ALA ASN LYS TYR THR PHE GLY PRO ILE GLY
SEQRES 25 B 480 GLU LEU TRP TYR ARG LYS SER GLY THR TYR ARG GLY LYS
SEQRES 26 B 480 VAL GLN ASN LEU THR GLN PHE TYR HIS PRO LEU ASP MET
SEQRES 27 B 480 PHE GLY GLU TRP ASN ARG ALA TYR GLY PRO ALA GLY PHE
SEQRES 28 B 480 LEU GLN TYR GLN PHE VAL ILE PRO THR GLU ALA VAL ASP
SEQRES 29 B 480 GLU PHE LYS LYS ILE ILE GLY VAL ILE GLN ALA SER GLY
SEQRES 30 B 480 HIS TYR SER PHE LEU ASN VAL PHE LYS LEU PHE GLY PRO
SEQRES 31 B 480 ARG ASN GLN ALA PRO LEU SER PHE PRO ILE PRO GLY TRP
SEQRES 32 B 480 ASN ILE CYS VAL ASP PHE PRO ILE LYS ASP GLY LEU GLY
SEQRES 33 B 480 LYS PHE VAL SER GLU LEU ASP ARG ARG VAL LEU GLU PHE
SEQRES 34 B 480 GLY GLY ARG LEU TYR THR ALA LYS ASP SER ARG THR THR
SEQRES 35 B 480 ALA GLU THR PHE HIS ALA MET TYR PRO ARG VAL ASP GLU
SEQRES 36 B 480 TRP ILE SER VAL ARG ARG LYS VAL ASP PRO LEU ARG VAL
SEQRES 37 B 480 PHE ALA SER ASP MET ALA ARG ARG LEU GLU LEU LEU
HET FAD A 501 53
HET Y22 A 502 29
HET IMD A 503 5
HET 2J3 A 504 13
HET FAD B 501 53
HET Y22 B 502 29
HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE
HETNAM Y22 6-(TRIFLUOROMETHYL)-3-{[4-(TRIFLUOROMETHYL)
HETNAM 2 Y22 BENZYL]AMINO}QUINOXALINE-2-CARBOXYLIC ACID
HETNAM IMD IMIDAZOLE
HETNAM 2J3 (2R)-2-{[(2R)-2-{[(2R)-2-
HETNAM 2 2J3 HYDROXYPROPYL]OXY}PROPYL]OXY}PROPAN-1-OL
FORMUL 3 FAD 2(C27 H33 N9 O15 P2)
FORMUL 4 Y22 2(C18 H11 F6 N3 O2)
FORMUL 5 IMD C3 H5 N2 1+
FORMUL 6 2J3 C9 H20 O4
FORMUL 9 HOH *236(H2 O)
HELIX 1 AA1 ASP A 31 GLY A 46 1 16
HELIX 2 AA2 ASN A 97 LEU A 106 1 10
HELIX 3 AA3 THR A 122 CYS A 129 1 8
HELIX 4 AA4 ASN A 135 GLY A 140 1 6
HELIX 5 AA5 SER A 141 ASN A 144 5 4
HELIX 6 AA6 ASP A 167 VAL A 175 1 9
HELIX 7 AA7 SER A 208 ASP A 218 1 11
HELIX 8 AA8 GLY A 219 TYR A 224 5 6
HELIX 9 AA9 THR A 252 LEU A 256 5 5
HELIX 10 AB1 PRO A 257 SER A 262 1 6
HELIX 11 AB2 LEU A 275 PHE A 279 1 5
HELIX 12 AB3 GLY A 290 GLY A 301 1 12
HELIX 13 AB4 ASN A 309 HIS A 315 1 7
HELIX 14 AB5 LEU A 317 GLY A 321 5 5
HELIX 15 AB6 ALA A 343 ALA A 356 1 14
HELIX 16 AB7 GLY A 395 PHE A 410 1 16
HELIX 17 AB8 THR A 416 ASP A 419 5 4
HELIX 18 AB9 THR A 423 TYR A 431 1 9
HELIX 19 AC1 ARG A 433 ASP A 445 1 13
HELIX 20 AC2 SER A 452 LEU A 458 1 7
HELIX 21 AC3 ASP B 31 GLY B 46 1 16
HELIX 22 AC4 ASN B 97 LEU B 106 1 10
HELIX 23 AC5 THR B 122 CYS B 129 1 8
HELIX 24 AC6 ASN B 135 GLY B 140 1 6
HELIX 25 AC7 SER B 141 ASN B 144 5 4
HELIX 26 AC8 ASP B 167 VAL B 175 1 9
HELIX 27 AC9 SER B 208 ASP B 218 1 11
HELIX 28 AD1 GLY B 219 TYR B 224 5 6
HELIX 29 AD2 THR B 252 LEU B 256 5 5
HELIX 30 AD3 PRO B 257 SER B 262 1 6
HELIX 31 AD4 LEU B 295 THR B 302 1 8
HELIX 32 AD5 ASN B 309 HIS B 315 1 7
HELIX 33 AD6 ALA B 343 ALA B 356 1 14
HELIX 34 AD7 GLY B 395 PHE B 410 1 16
HELIX 35 AD8 THR B 416 ASP B 419 5 4
HELIX 36 AD9 THR B 423 TYR B 431 1 9
HELIX 37 AE1 ARG B 433 LYS B 443 1 11
HELIX 38 AE2 SER B 452 LEU B 458 1 7
SHEET 1 AA1 4 THR A 8 LEU A 13 0
SHEET 2 AA1 4 SER A 22 ARG A 28 -1 O ALA A 24 N THR A 11
SHEET 3 AA1 4 LEU A 70 ASP A 73 1 O VAL A 71 N ASN A 25
SHEET 4 AA1 4 ALA A 51 ARG A 54 1 N ILE A 52 O ILE A 72
SHEET 1 AA210 ILE A 158 LEU A 161 0
SHEET 2 AA210 VAL A 146 LEU A 152 -1 N MET A 149 O LEU A 161
SHEET 3 AA210 ILE A 183 GLU A 190 -1 O ILE A 183 N LEU A 152
SHEET 4 AA210 LEU A 89 ASP A 93 -1 N ILE A 92 O ALA A 187
SHEET 5 AA210 ILE A 80 ASP A 84 -1 N SER A 82 O ASP A 91
SHEET 6 AA210 ILE B 80 ASP B 84 -1 O ILE B 83 N ILE A 83
SHEET 7 AA210 LEU B 89 ASP B 93 -1 O ASP B 91 N SER B 82
SHEET 8 AA210 ILE B 183 GLU B 190 -1 O ALA B 187 N ILE B 92
SHEET 9 AA210 VAL B 146 LEU B 152 -1 N LEU B 152 O ILE B 183
SHEET 10 AA210 ILE B 158 LEU B 161 -1 O LEU B 161 N MET B 149
SHEET 1 AA3 2 LEU A 110 TRP A 111 0
SHEET 2 AA3 2 THR A 192 PRO A 193 -1 O THR A 192 N TRP A 111
SHEET 1 AA4 8 TYR A 303 GLN A 308 0
SHEET 2 AA4 8 PHE A 199 VAL A 205 -1 N PHE A 199 O GLN A 308
SHEET 3 AA4 8 ALA A 243 LEU A 250 -1 O ARG A 247 N ASP A 202
SHEET 4 AA4 8 TYR A 226 PHE A 231 -1 N SER A 228 O SER A 246
SHEET 5 AA4 8 VAL A 365 PHE A 369 -1 O PHE A 366 N ALA A 229
SHEET 6 AA4 8 GLY A 383 PRO A 391 -1 O ASN A 385 N LYS A 367
SHEET 7 AA4 8 PHE A 332 PRO A 340 -1 N LEU A 333 O PHE A 390
SHEET 8 AA4 8 ARG A 413 LEU A 414 -1 O ARG A 413 N VAL A 338
SHEET 1 AA5 4 THR B 9 LEU B 13 0
SHEET 2 AA5 4 SER B 22 ARG B 28 -1 O ALA B 24 N THR B 11
SHEET 3 AA5 4 LEU B 70 ASP B 73 1 O VAL B 71 N ASN B 25
SHEET 4 AA5 4 ALA B 51 ARG B 54 1 N ILE B 52 O ILE B 72
SHEET 1 AA6 2 LEU B 110 TRP B 111 0
SHEET 2 AA6 2 THR B 192 PRO B 193 -1 O THR B 192 N TRP B 111
SHEET 1 AA7 4 TYR B 226 PHE B 231 0
SHEET 2 AA7 4 ALA B 243 LEU B 250 -1 O SER B 246 N SER B 228
SHEET 3 AA7 4 PHE B 199 VAL B 205 -1 N ASP B 202 O ARG B 247
SHEET 4 AA7 4 TYR B 303 GLN B 308 -1 O LYS B 306 N ALA B 201
SHEET 1 AA8 4 VAL B 365 PHE B 369 0
SHEET 2 AA8 4 GLY B 383 PRO B 391 -1 O ASN B 385 N LYS B 367
SHEET 3 AA8 4 PHE B 332 PRO B 340 -1 N TYR B 335 O VAL B 388
SHEET 4 AA8 4 ARG B 413 LEU B 414 -1 O ARG B 413 N VAL B 338
CISPEP 1 PRO A 237 PRO A 238 0 7.38
CISPEP 2 PRO B 237 PRO B 238 0 7.06
SITE 1 AC1 33 TRP A 16 ILE A 52 ALA A 53 GLY A 55
SITE 2 AC1 33 LEU A 56 GLY A 57 ARG A 58 SER A 59
SITE 3 AC1 33 TYR A 60 ASN A 63 ALA A 64 MET A 74
SITE 4 AC1 33 ALA A 94 PRO A 116 GLY A 117 THR A 118
SITE 5 AC1 33 VAL A 121 THR A 122 GLY A 124 GLY A 125
SITE 6 AC1 33 ALA A 128 CYS A 129 ILE A 131 HIS A 132
SITE 7 AC1 33 ASN A 178 GLY A 179 GLY A 182 ILE A 184
SITE 8 AC1 33 TYR A 415 ALA A 417 Y22 A 502 HOH A 643
SITE 9 AC1 33 HOH A 675
SITE 1 AC2 15 TYR A 60 HIS A 132 GLY A 133 LYS A 134
SITE 2 AC2 15 TRP A 230 GLN A 334 LEU A 363 ASN A 364
SITE 3 AC2 15 VAL A 365 LYS A 367 ASN A 385 CYS A 387
SITE 4 AC2 15 LYS A 418 FAD A 501 2J3 A 504
SITE 1 AC3 4 SER A 82 ASP A 84 SER B 82 ASP B 84
SITE 1 AC4 4 SER A 228 ALA A 229 ALA A 244 Y22 A 502
SITE 1 AC5 33 TRP B 16 ILE B 52 ALA B 53 GLY B 55
SITE 2 AC5 33 LEU B 56 GLY B 57 ARG B 58 SER B 59
SITE 3 AC5 33 TYR B 60 ASN B 63 ALA B 64 MET B 74
SITE 4 AC5 33 ALA B 94 PRO B 116 GLY B 117 THR B 118
SITE 5 AC5 33 VAL B 121 THR B 122 GLY B 124 GLY B 125
SITE 6 AC5 33 ALA B 128 CYS B 129 ILE B 131 HIS B 132
SITE 7 AC5 33 ASN B 178 GLY B 179 GLY B 182 ILE B 184
SITE 8 AC5 33 TYR B 415 ALA B 417 Y22 B 502 HOH B 643
SITE 9 AC5 33 HOH B 649
SITE 1 AC6 13 TYR B 60 HIS B 132 GLY B 133 LYS B 134
SITE 2 AC6 13 TRP B 230 LEU B 363 ASN B 364 VAL B 365
SITE 3 AC6 13 LYS B 367 ASN B 385 CYS B 387 LYS B 418
SITE 4 AC6 13 FAD B 501
CRYST1 77.678 84.158 80.905 90.00 103.17 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012874 0.000000 0.003013 0.00000
SCALE2 0.000000 0.011882 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012694 0.00000