HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 31-MAR-14 4P8H TITLE CRYSTAL STRUCTURE OF M. TUBERCULOSIS DPRE1 IN COMPLEX WITH THE NITRO- TITLE 2 BENZOTHIAZOLE 6A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE DECAPRENYLPHOSPHORYL-BETA-D-RIBOSE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DPRE1; COMPND 5 EC: 1.-.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: DPRE1, RV3790, MT3898; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS DPRE1, INHIBITOR, COMPLEX, COVALENT, NITRO-BENZOTHIAZOLE 6A, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.NERES,S.T.COLE REVDAT 2 27-DEC-23 4P8H 1 REMARK REVDAT 1 28-OCT-15 4P8H 0 JRNL AUTH J.NERES,S.T.COLE JRNL TITL NON-MUTAGENIC NITROBENZOTHIAZOLES AS NOVEL ANTI-TUBERCULAR JRNL TITL 2 AGENTS: A BALANCE BETWEEN POTENCY AND ELECTRON AFFINITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 16784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 902 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1116 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.4380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6370 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 162 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.586 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.444 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.816 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.891 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.802 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6690 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9111 ; 1.101 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 823 ; 4.696 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 281 ;34.231 ;22.633 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1042 ;17.244 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;15.247 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1006 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5078 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4P8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200922. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR WITH DUAL REMARK 200 CHANNEL CUT CRYSTALS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33780 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 48.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 2.440 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.21 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RMEAS 0.129 (OVERALL), 0.444 (OUTER SHELL) REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 34% POLYPROPYLENE GLYCOL 400, 100 MM REMARK 280 IMIDAZOLE, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.64850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 THR A 7 REMARK 465 ALA A 269 REMARK 465 PRO A 270 REMARK 465 GLN A 271 REMARK 465 LEU A 272 REMARK 465 LEU A 273 REMARK 465 THR A 274 REMARK 465 LEU A 275 REMARK 465 PRO A 276 REMARK 465 ASP A 277 REMARK 465 VAL A 278 REMARK 465 PHE A 279 REMARK 465 PRO A 280 REMARK 465 ASN A 281 REMARK 465 GLY A 282 REMARK 465 LEU A 283 REMARK 465 ALA A 284 REMARK 465 ASN A 285 REMARK 465 LYS A 286 REMARK 465 TYR A 287 REMARK 465 THR A 288 REMARK 465 PHE A 289 REMARK 465 GLY A 290 REMARK 465 PRO A 291 REMARK 465 ILE A 292 REMARK 465 GLY A 293 REMARK 465 HIS A 315 REMARK 465 PRO A 316 REMARK 465 LEU A 317 REMARK 465 ASP A 318 REMARK 465 MET A 319 REMARK 465 PHE A 320 REMARK 465 GLY A 321 REMARK 465 GLU A 322 REMARK 465 TRP A 323 REMARK 465 ASN A 324 REMARK 465 ARG A 325 REMARK 465 ALA A 326 REMARK 465 TYR A 327 REMARK 465 GLY A 328 REMARK 465 PRO A 329 REMARK 465 ALA A 330 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 GLY B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 269 REMARK 465 PRO B 270 REMARK 465 GLN B 271 REMARK 465 LEU B 272 REMARK 465 LEU B 273 REMARK 465 THR B 274 REMARK 465 LEU B 275 REMARK 465 PRO B 276 REMARK 465 ASP B 277 REMARK 465 VAL B 278 REMARK 465 PHE B 279 REMARK 465 PRO B 280 REMARK 465 ASN B 281 REMARK 465 GLY B 282 REMARK 465 LEU B 283 REMARK 465 ALA B 284 REMARK 465 ASN B 285 REMARK 465 LYS B 286 REMARK 465 TYR B 287 REMARK 465 THR B 288 REMARK 465 PHE B 289 REMARK 465 GLY B 290 REMARK 465 TYR B 314 REMARK 465 HIS B 315 REMARK 465 PRO B 316 REMARK 465 LEU B 317 REMARK 465 ASP B 318 REMARK 465 MET B 319 REMARK 465 PHE B 320 REMARK 465 GLY B 321 REMARK 465 GLU B 322 REMARK 465 TRP B 323 REMARK 465 ASN B 324 REMARK 465 ARG B 325 REMARK 465 ALA B 326 REMARK 465 TYR B 327 REMARK 465 GLY B 328 REMARK 465 PRO B 329 REMARK 465 ALA B 330 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 20 76.86 47.16 REMARK 500 VAL A 175 106.25 -57.81 REMARK 500 ASN A 178 28.33 48.76 REMARK 500 ALA A 343 56.83 -90.87 REMARK 500 PRO A 382 105.30 -56.86 REMARK 500 ASP B 130 71.93 52.72 REMARK 500 GLU B 263 67.92 -117.85 REMARK 500 ALA B 343 49.97 -79.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O95 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O95 B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P8C RELATED DB: PDB REMARK 900 RELATED ID: 4P8K RELATED DB: PDB REMARK 900 RELATED ID: 4P8L RELATED DB: PDB REMARK 900 RELATED ID: 4P8M RELATED DB: PDB REMARK 900 RELATED ID: 4P8N RELATED DB: PDB REMARK 900 RELATED ID: 4P8P RELATED DB: PDB REMARK 900 RELATED ID: 4P8T RELATED DB: PDB REMARK 900 RELATED ID: 4P8Y RELATED DB: PDB DBREF 4P8H A 1 461 UNP P72056 DPRE1_MYCTU 1 461 DBREF 4P8H B 1 461 UNP P72056 DPRE1_MYCTU 1 461 SEQADV 4P8H MET A -19 UNP P72056 EXPRESSION TAG SEQADV 4P8H GLY A -18 UNP P72056 EXPRESSION TAG SEQADV 4P8H SER A -17 UNP P72056 EXPRESSION TAG SEQADV 4P8H SER A -16 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS A -15 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS A -14 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS A -13 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS A -12 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS A -11 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS A -10 UNP P72056 EXPRESSION TAG SEQADV 4P8H SER A -9 UNP P72056 EXPRESSION TAG SEQADV 4P8H SER A -8 UNP P72056 EXPRESSION TAG SEQADV 4P8H GLY A -7 UNP P72056 EXPRESSION TAG SEQADV 4P8H LEU A -6 UNP P72056 EXPRESSION TAG SEQADV 4P8H VAL A -5 UNP P72056 EXPRESSION TAG SEQADV 4P8H PRO A -4 UNP P72056 EXPRESSION TAG SEQADV 4P8H ARG A -3 UNP P72056 EXPRESSION TAG SEQADV 4P8H GLY A -2 UNP P72056 EXPRESSION TAG SEQADV 4P8H SER A -1 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS A 0 UNP P72056 EXPRESSION TAG SEQADV 4P8H MET B -19 UNP P72056 EXPRESSION TAG SEQADV 4P8H GLY B -18 UNP P72056 EXPRESSION TAG SEQADV 4P8H SER B -17 UNP P72056 EXPRESSION TAG SEQADV 4P8H SER B -16 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS B -15 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS B -14 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS B -13 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS B -12 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS B -11 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS B -10 UNP P72056 EXPRESSION TAG SEQADV 4P8H SER B -9 UNP P72056 EXPRESSION TAG SEQADV 4P8H SER B -8 UNP P72056 EXPRESSION TAG SEQADV 4P8H GLY B -7 UNP P72056 EXPRESSION TAG SEQADV 4P8H LEU B -6 UNP P72056 EXPRESSION TAG SEQADV 4P8H VAL B -5 UNP P72056 EXPRESSION TAG SEQADV 4P8H PRO B -4 UNP P72056 EXPRESSION TAG SEQADV 4P8H ARG B -3 UNP P72056 EXPRESSION TAG SEQADV 4P8H GLY B -2 UNP P72056 EXPRESSION TAG SEQADV 4P8H SER B -1 UNP P72056 EXPRESSION TAG SEQADV 4P8H HIS B 0 UNP P72056 EXPRESSION TAG SEQRES 1 A 481 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 481 LEU VAL PRO ARG GLY SER HIS MET LEU SER VAL GLY ALA SEQRES 3 A 481 THR THR THR ALA THR ARG LEU THR GLY TRP GLY ARG THR SEQRES 4 A 481 ALA PRO SER VAL ALA ASN VAL LEU ARG THR PRO ASP ALA SEQRES 5 A 481 GLU MET ILE VAL LYS ALA VAL ALA ARG VAL ALA GLU SER SEQRES 6 A 481 GLY GLY GLY ARG GLY ALA ILE ALA ARG GLY LEU GLY ARG SEQRES 7 A 481 SER TYR GLY ASP ASN ALA GLN ASN GLY GLY GLY LEU VAL SEQRES 8 A 481 ILE ASP MET THR PRO LEU ASN THR ILE HIS SER ILE ASP SEQRES 9 A 481 ALA ASP THR LYS LEU VAL ASP ILE ASP ALA GLY VAL ASN SEQRES 10 A 481 LEU ASP GLN LEU MET LYS ALA ALA LEU PRO PHE GLY LEU SEQRES 11 A 481 TRP VAL PRO VAL LEU PRO GLY THR ARG GLN VAL THR VAL SEQRES 12 A 481 GLY GLY ALA ILE ALA CYS ASP ILE HIS GLY LYS ASN HIS SEQRES 13 A 481 HIS SER ALA GLY SER PHE GLY ASN HIS VAL ARG SER MET SEQRES 14 A 481 ASP LEU LEU THR ALA ASP GLY GLU ILE ARG HIS LEU THR SEQRES 15 A 481 PRO THR GLY GLU ASP ALA GLU LEU PHE TRP ALA THR VAL SEQRES 16 A 481 GLY GLY ASN GLY LEU THR GLY ILE ILE MET ARG ALA THR SEQRES 17 A 481 ILE GLU MET THR PRO THR SER THR ALA TYR PHE ILE ALA SEQRES 18 A 481 ASP GLY ASP VAL THR ALA SER LEU ASP GLU THR ILE ALA SEQRES 19 A 481 LEU HIS SER ASP GLY SER GLU ALA ARG TYR THR TYR SER SEQRES 20 A 481 SER ALA TRP PHE ASP ALA ILE SER ALA PRO PRO LYS LEU SEQRES 21 A 481 GLY ARG ALA ALA VAL SER ARG GLY ARG LEU ALA THR VAL SEQRES 22 A 481 GLU GLN LEU PRO ALA LYS LEU ARG SER GLU PRO LEU LYS SEQRES 23 A 481 PHE ASP ALA PRO GLN LEU LEU THR LEU PRO ASP VAL PHE SEQRES 24 A 481 PRO ASN GLY LEU ALA ASN LYS TYR THR PHE GLY PRO ILE SEQRES 25 A 481 GLY GLU LEU TRP TYR ARG LYS SER GLY THR TYR ARG GLY SEQRES 26 A 481 LYS VAL GLN ASN LEU THR GLN PHE TYR HIS PRO LEU ASP SEQRES 27 A 481 MET PHE GLY GLU TRP ASN ARG ALA TYR GLY PRO ALA GLY SEQRES 28 A 481 PHE LEU GLN TYR GLN PHE VAL ILE PRO THR GLU ALA VAL SEQRES 29 A 481 ASP GLU PHE LYS LYS ILE ILE GLY VAL ILE GLN ALA SER SEQRES 30 A 481 GLY HIS TYR SER PHE LEU ASN VAL PHE LYS LEU PHE GLY SEQRES 31 A 481 PRO ARG ASN GLN ALA PRO LEU SER PHE PRO ILE PRO GLY SEQRES 32 A 481 TRP ASN ILE CYS VAL ASP PHE PRO ILE LYS ASP GLY LEU SEQRES 33 A 481 GLY LYS PHE VAL SER GLU LEU ASP ARG ARG VAL LEU GLU SEQRES 34 A 481 PHE GLY GLY ARG LEU TYR THR ALA LYS ASP SER ARG THR SEQRES 35 A 481 THR ALA GLU THR PHE HIS ALA MET TYR PRO ARG VAL ASP SEQRES 36 A 481 GLU TRP ILE SER VAL ARG ARG LYS VAL ASP PRO LEU ARG SEQRES 37 A 481 VAL PHE ALA SER ASP MET ALA ARG ARG LEU GLU LEU LEU SEQRES 1 B 481 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 481 LEU VAL PRO ARG GLY SER HIS MET LEU SER VAL GLY ALA SEQRES 3 B 481 THR THR THR ALA THR ARG LEU THR GLY TRP GLY ARG THR SEQRES 4 B 481 ALA PRO SER VAL ALA ASN VAL LEU ARG THR PRO ASP ALA SEQRES 5 B 481 GLU MET ILE VAL LYS ALA VAL ALA ARG VAL ALA GLU SER SEQRES 6 B 481 GLY GLY GLY ARG GLY ALA ILE ALA ARG GLY LEU GLY ARG SEQRES 7 B 481 SER TYR GLY ASP ASN ALA GLN ASN GLY GLY GLY LEU VAL SEQRES 8 B 481 ILE ASP MET THR PRO LEU ASN THR ILE HIS SER ILE ASP SEQRES 9 B 481 ALA ASP THR LYS LEU VAL ASP ILE ASP ALA GLY VAL ASN SEQRES 10 B 481 LEU ASP GLN LEU MET LYS ALA ALA LEU PRO PHE GLY LEU SEQRES 11 B 481 TRP VAL PRO VAL LEU PRO GLY THR ARG GLN VAL THR VAL SEQRES 12 B 481 GLY GLY ALA ILE ALA CYS ASP ILE HIS GLY LYS ASN HIS SEQRES 13 B 481 HIS SER ALA GLY SER PHE GLY ASN HIS VAL ARG SER MET SEQRES 14 B 481 ASP LEU LEU THR ALA ASP GLY GLU ILE ARG HIS LEU THR SEQRES 15 B 481 PRO THR GLY GLU ASP ALA GLU LEU PHE TRP ALA THR VAL SEQRES 16 B 481 GLY GLY ASN GLY LEU THR GLY ILE ILE MET ARG ALA THR SEQRES 17 B 481 ILE GLU MET THR PRO THR SER THR ALA TYR PHE ILE ALA SEQRES 18 B 481 ASP GLY ASP VAL THR ALA SER LEU ASP GLU THR ILE ALA SEQRES 19 B 481 LEU HIS SER ASP GLY SER GLU ALA ARG TYR THR TYR SER SEQRES 20 B 481 SER ALA TRP PHE ASP ALA ILE SER ALA PRO PRO LYS LEU SEQRES 21 B 481 GLY ARG ALA ALA VAL SER ARG GLY ARG LEU ALA THR VAL SEQRES 22 B 481 GLU GLN LEU PRO ALA LYS LEU ARG SER GLU PRO LEU LYS SEQRES 23 B 481 PHE ASP ALA PRO GLN LEU LEU THR LEU PRO ASP VAL PHE SEQRES 24 B 481 PRO ASN GLY LEU ALA ASN LYS TYR THR PHE GLY PRO ILE SEQRES 25 B 481 GLY GLU LEU TRP TYR ARG LYS SER GLY THR TYR ARG GLY SEQRES 26 B 481 LYS VAL GLN ASN LEU THR GLN PHE TYR HIS PRO LEU ASP SEQRES 27 B 481 MET PHE GLY GLU TRP ASN ARG ALA TYR GLY PRO ALA GLY SEQRES 28 B 481 PHE LEU GLN TYR GLN PHE VAL ILE PRO THR GLU ALA VAL SEQRES 29 B 481 ASP GLU PHE LYS LYS ILE ILE GLY VAL ILE GLN ALA SER SEQRES 30 B 481 GLY HIS TYR SER PHE LEU ASN VAL PHE LYS LEU PHE GLY SEQRES 31 B 481 PRO ARG ASN GLN ALA PRO LEU SER PHE PRO ILE PRO GLY SEQRES 32 B 481 TRP ASN ILE CYS VAL ASP PHE PRO ILE LYS ASP GLY LEU SEQRES 33 B 481 GLY LYS PHE VAL SER GLU LEU ASP ARG ARG VAL LEU GLU SEQRES 34 B 481 PHE GLY GLY ARG LEU TYR THR ALA LYS ASP SER ARG THR SEQRES 35 B 481 THR ALA GLU THR PHE HIS ALA MET TYR PRO ARG VAL ASP SEQRES 36 B 481 GLU TRP ILE SER VAL ARG ARG LYS VAL ASP PRO LEU ARG SEQRES 37 B 481 VAL PHE ALA SER ASP MET ALA ARG ARG LEU GLU LEU LEU HET FAD A 501 53 HET O95 A 502 28 HET FAD B 501 53 HET O95 B 502 28 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM O95 {(4S)-2-[7-(HYDROXYAMINO)-6-METHYL-5-(TRIFLUOROMETHYL)- HETNAM 2 O95 1,3-BENZOTHIAZOL-2-YL]-4,5-DIHYDRO-1,3-OXAZOL-4- HETNAM 3 O95 YL}(PYRROLIDIN-1-YL)METHANONE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 O95 2(C17 H17 F3 N4 O3 S) FORMUL 7 HOH *18(H2 O) HELIX 1 AA1 ASP A 31 GLU A 44 1 14 HELIX 2 AA2 ASN A 97 LEU A 106 1 10 HELIX 3 AA3 THR A 122 ASP A 130 1 9 HELIX 4 AA4 ASN A 135 GLY A 140 1 6 HELIX 5 AA5 SER A 141 ASN A 144 5 4 HELIX 6 AA6 ASP A 167 VAL A 175 1 9 HELIX 7 AA7 SER A 208 ASP A 218 1 11 HELIX 8 AA8 GLY A 219 TYR A 224 5 6 HELIX 9 AA9 LYS A 259 GLU A 263 5 5 HELIX 10 AB1 LEU A 295 THR A 302 1 8 HELIX 11 AB2 LEU A 310 TYR A 314 1 5 HELIX 12 AB3 ALA A 343 SER A 357 1 15 HELIX 13 AB4 GLY A 395 PHE A 410 1 16 HELIX 14 AB5 THR A 423 TYR A 431 1 9 HELIX 15 AB6 ARG A 433 ASP A 445 1 13 HELIX 16 AB7 SER A 452 LEU A 458 1 7 HELIX 17 AB8 ASP B 31 ARG B 41 1 11 HELIX 18 AB9 ARG B 41 GLY B 46 1 6 HELIX 19 AC1 GLY B 61 GLN B 65 5 5 HELIX 20 AC2 ASN B 97 LEU B 106 1 10 HELIX 21 AC3 THR B 122 ASP B 130 1 9 HELIX 22 AC4 ASN B 135 GLY B 140 1 6 HELIX 23 AC5 SER B 141 ASN B 144 5 4 HELIX 24 AC6 ASP B 167 VAL B 175 1 9 HELIX 25 AC7 SER B 208 ASP B 218 1 11 HELIX 26 AC8 GLY B 219 TYR B 224 5 6 HELIX 27 AC9 PRO B 257 SER B 262 5 6 HELIX 28 AD1 ILE B 292 GLY B 301 1 10 HELIX 29 AD2 ALA B 343 ALA B 356 1 14 HELIX 30 AD3 GLY B 395 PHE B 410 1 16 HELIX 31 AD4 THR B 416 ASP B 419 5 4 HELIX 32 AD5 THR B 423 TYR B 431 1 9 HELIX 33 AD6 ARG B 433 ASP B 445 1 13 HELIX 34 AD7 SER B 452 LEU B 458 1 7 SHEET 1 AA1 4 THR A 9 LEU A 13 0 SHEET 2 AA1 4 SER A 22 ARG A 28 -1 O ALA A 24 N THR A 11 SHEET 3 AA1 4 LEU A 70 ASP A 73 1 O VAL A 71 N ASN A 25 SHEET 4 AA1 4 ALA A 51 ARG A 54 1 N ARG A 54 O ILE A 72 SHEET 1 AA210 ILE A 158 LEU A 161 0 SHEET 2 AA210 VAL A 146 LEU A 152 -1 N MET A 149 O LEU A 161 SHEET 3 AA210 ILE A 183 GLU A 190 -1 O ILE A 183 N LEU A 152 SHEET 4 AA210 LEU A 89 ASP A 93 -1 N ILE A 92 O ALA A 187 SHEET 5 AA210 ILE A 80 ASP A 84 -1 N ASP A 84 O LEU A 89 SHEET 6 AA210 ILE B 80 ASP B 84 -1 O ILE B 83 N ILE A 83 SHEET 7 AA210 LEU B 89 ASP B 93 -1 O LEU B 89 N ASP B 84 SHEET 8 AA210 ILE B 183 GLU B 190 -1 O ALA B 187 N ILE B 92 SHEET 9 AA210 VAL B 146 LEU B 152 -1 N LEU B 152 O ILE B 183 SHEET 10 AA210 ILE B 158 LEU B 161 -1 O LEU B 161 N MET B 149 SHEET 1 AA3 2 LEU A 110 TRP A 111 0 SHEET 2 AA3 2 THR A 192 PRO A 193 -1 O THR A 192 N TRP A 111 SHEET 1 AA4 8 TYR A 303 ASN A 309 0 SHEET 2 AA4 8 TYR A 198 VAL A 205 -1 N PHE A 199 O GLN A 308 SHEET 3 AA4 8 ALA A 243 LEU A 250 -1 O ARG A 247 N ASP A 202 SHEET 4 AA4 8 TYR A 226 PHE A 231 -1 N TRP A 230 O ALA A 244 SHEET 5 AA4 8 ASN A 364 LEU A 368 -1 O ASN A 364 N PHE A 231 SHEET 6 AA4 8 GLY A 383 PRO A 391 -1 O ASN A 385 N LYS A 367 SHEET 7 AA4 8 PHE A 332 PRO A 340 -1 N TYR A 335 O VAL A 388 SHEET 8 AA4 8 ARG A 413 LEU A 414 -1 O ARG A 413 N VAL A 338 SHEET 1 AA5 4 THR B 9 LEU B 13 0 SHEET 2 AA5 4 SER B 22 LEU B 27 -1 O SER B 22 N LEU B 13 SHEET 3 AA5 4 LEU B 70 ASP B 73 1 O VAL B 71 N ASN B 25 SHEET 4 AA5 4 ALA B 51 ARG B 54 1 N ILE B 52 O ILE B 72 SHEET 1 AA6 2 LEU B 110 TRP B 111 0 SHEET 2 AA6 2 THR B 192 PRO B 193 -1 O THR B 192 N TRP B 111 SHEET 1 AA7 8 TYR B 303 GLN B 308 0 SHEET 2 AA7 8 PHE B 199 VAL B 205 -1 N PHE B 199 O GLN B 308 SHEET 3 AA7 8 ALA B 243 LEU B 250 -1 O ARG B 247 N ASP B 202 SHEET 4 AA7 8 TYR B 226 PHE B 231 -1 N TYR B 226 O GLY B 248 SHEET 5 AA7 8 ASN B 364 LEU B 368 -1 O ASN B 364 N PHE B 231 SHEET 6 AA7 8 GLY B 383 VAL B 388 -1 O ASN B 385 N LYS B 367 SHEET 7 AA7 8 TYR B 335 PRO B 340 -1 N TYR B 335 O VAL B 388 SHEET 8 AA7 8 ARG B 413 LEU B 414 -1 O ARG B 413 N VAL B 338 LINK SG CYS A 387 N3 O95 A 502 1555 1555 1.61 LINK SG CYS B 387 N3 O95 B 502 1555 1555 1.62 CISPEP 1 PRO A 237 PRO A 238 0 4.20 CISPEP 2 PRO B 237 PRO B 238 0 1.88 SITE 1 AC1 29 TRP A 16 ILE A 52 ALA A 53 ARG A 54 SITE 2 AC1 29 GLY A 55 LEU A 56 GLY A 57 ARG A 58 SITE 3 AC1 29 SER A 59 ASN A 63 ALA A 64 MET A 74 SITE 4 AC1 29 ALA A 94 PRO A 116 GLY A 117 THR A 118 SITE 5 AC1 29 VAL A 121 THR A 122 GLY A 124 GLY A 125 SITE 6 AC1 29 ALA A 128 ILE A 131 HIS A 132 ASN A 178 SITE 7 AC1 29 GLY A 179 GLY A 182 ILE A 184 TYR A 415 SITE 8 AC1 29 ALA A 417 SITE 1 AC2 10 GLY A 117 HIS A 132 TRP A 230 TYR A 314 SITE 2 AC2 10 GLN A 336 VAL A 365 LYS A 367 ASN A 385 SITE 3 AC2 10 LYS A 418 FAD A 501 SITE 1 AC3 25 TRP B 16 ILE B 52 ALA B 53 GLY B 55 SITE 2 AC3 25 LEU B 56 GLY B 57 ARG B 58 SER B 59 SITE 3 AC3 25 TYR B 60 ASN B 63 ALA B 64 MET B 74 SITE 4 AC3 25 ALA B 94 GLY B 117 VAL B 121 THR B 122 SITE 5 AC3 25 GLY B 125 ALA B 128 ILE B 131 HIS B 132 SITE 6 AC3 25 ASN B 178 GLY B 179 ILE B 184 TYR B 415 SITE 7 AC3 25 ALA B 417 SITE 1 AC4 11 GLY B 117 HIS B 132 GLY B 133 LYS B 134 SITE 2 AC4 11 TRP B 230 GLN B 336 VAL B 365 LYS B 367 SITE 3 AC4 11 ASN B 385 LYS B 418 FAD B 501 CRYST1 72.045 77.297 81.209 90.00 100.31 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013880 0.000000 0.002525 0.00000 SCALE2 0.000000 0.012937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012516 0.00000