data_4P8Z # _entry.id 4P8Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4P8Z pdb_00004p8z 10.2210/pdb4p8z/pdb WWPDB D_1000200926 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Lariat-capping ribozyme' _pdbx_database_related.db_id 4P95 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 4P8Z _pdbx_database_status.recvd_initial_deposition_date 2014-04-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.methods_development_category . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Meyer, M.' 1 ? 'Nielsen, H.' 2 ? 'Olieric, V.' 3 ? 'Roblin, P.' 4 ? 'Johansen, S.D.' 5 ? 'Westhof, E.' 6 ? 'Masquida, B.' 7 ? # _citation.abstract . _citation.abstract_id_CAS . _citation.book_id_ISBN . _citation.book_publisher ? _citation.book_publisher_city . _citation.book_title . _citation.coordinate_linkage . _citation.country US _citation.database_id_Medline . _citation.details . _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full . _citation.journal_issue . _citation.journal_volume 111 _citation.language . _citation.page_first 7659 _citation.page_last 7664 _citation.title 'Speciation of a group I intron into a lariat capping ribozyme.' _citation.year 2014 _citation.database_id_CSD . _citation.pdbx_database_id_DOI 10.1073/pnas.1322248111 _citation.pdbx_database_id_PubMed 24821772 _citation.unpublished_flag . # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Meyer, M.' 1 ? primary 'Nielsen, H.' 2 ? primary 'Olieric, V.' 3 ? primary 'Roblin, P.' 4 ? primary 'Johansen, S.D.' 5 ? primary 'Westhof, E.' 6 ? primary 'Masquida, B.' 7 ? # _cell.entry_id 4P8Z _cell.length_a 52.560 _cell.length_b 88.860 _cell.length_c 105.700 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P8Z _symmetry.cell_setting . _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M . # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Didymium iridis partial IGS, 18S rRNA gene, I-DirI gene and partial ITS1' _entity.formula_weight 60628.977 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation U140C _entity.pdbx_fragment 1502-1689 _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGUUGGGUUGGGAAGUAUCAUGGCUAAUCACCAUGAUGCAAUCGGGUUGAACACUUAAUUGGGUUAAAACGGUGGGGGAC GAUCCCGUAACAUCCGUCCUAACGGCGACAGACUGCACGGCCCUGCCUCUUAGGUGUGUCCAAUGAACAGUCGUUCCGAA AGGAAGCAUCCGGUAUCCCAAGACAAUC ; _entity_poly.pdbx_seq_one_letter_code_can ;GGUUGGGUUGGGAAGUAUCAUGGCUAAUCACCAUGAUGCAAUCGGGUUGAACACUUAAUUGGGUUAAAACGGUGGGGGAC GAUCCCGUAACAUCCGUCCUAACGGCGACAGACUGCACGGCCCUGCCUCUUAGGUGUGUCCAAUGAACAGUCGUUCCGAA AGGAAGCAUCCGGUAUCCCAAGACAAUC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 U n 1 5 G n 1 6 G n 1 7 G n 1 8 U n 1 9 U n 1 10 G n 1 11 G n 1 12 G n 1 13 A n 1 14 A n 1 15 G n 1 16 U n 1 17 A n 1 18 U n 1 19 C n 1 20 A n 1 21 U n 1 22 G n 1 23 G n 1 24 C n 1 25 U n 1 26 A n 1 27 A n 1 28 U n 1 29 C n 1 30 A n 1 31 C n 1 32 C n 1 33 A n 1 34 U n 1 35 G n 1 36 A n 1 37 U n 1 38 G n 1 39 C n 1 40 A n 1 41 A n 1 42 U n 1 43 C n 1 44 G n 1 45 G n 1 46 G n 1 47 U n 1 48 U n 1 49 G n 1 50 A n 1 51 A n 1 52 C n 1 53 A n 1 54 C n 1 55 U n 1 56 U n 1 57 A n 1 58 A n 1 59 U n 1 60 U n 1 61 G n 1 62 G n 1 63 G n 1 64 U n 1 65 U n 1 66 A n 1 67 A n 1 68 A n 1 69 A n 1 70 C n 1 71 G n 1 72 G n 1 73 U n 1 74 G n 1 75 G n 1 76 G n 1 77 G n 1 78 G n 1 79 A n 1 80 C n 1 81 G n 1 82 A n 1 83 U n 1 84 C n 1 85 C n 1 86 C n 1 87 G n 1 88 U n 1 89 A n 1 90 A n 1 91 C n 1 92 A n 1 93 U n 1 94 C n 1 95 C n 1 96 G n 1 97 U n 1 98 C n 1 99 C n 1 100 U n 1 101 A n 1 102 A n 1 103 C n 1 104 G n 1 105 G n 1 106 C n 1 107 G n 1 108 A n 1 109 C n 1 110 A n 1 111 G n 1 112 A n 1 113 C n 1 114 U n 1 115 G n 1 116 C n 1 117 A n 1 118 C n 1 119 G n 1 120 G n 1 121 C n 1 122 C n 1 123 C n 1 124 U n 1 125 G n 1 126 C n 1 127 C n 1 128 U n 1 129 C n 1 130 U n 1 131 U n 1 132 A n 1 133 G n 1 134 G n 1 135 U n 1 136 G n 1 137 U n 1 138 G n 1 139 U n 1 140 C n 1 141 C n 1 142 A n 1 143 A n 1 144 U n 1 145 G n 1 146 A n 1 147 A n 1 148 C n 1 149 A n 1 150 G n 1 151 U n 1 152 C n 1 153 G n 1 154 U n 1 155 U n 1 156 C n 1 157 C n 1 158 G n 1 159 A n 1 160 A n 1 161 A n 1 162 G n 1 163 G n 1 164 A n 1 165 A n 1 166 G n 1 167 C n 1 168 A n 1 169 U n 1 170 C n 1 171 C n 1 172 G n 1 173 G n 1 174 U n 1 175 A n 1 176 U n 1 177 C n 1 178 C n 1 179 C n 1 180 A n 1 181 A n 1 182 G n 1 183 A n 1 184 C n 1 185 A n 1 186 A n 1 187 U n 1 188 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 188 _pdbx_entity_src_syn.organism_scientific 'Didymium iridis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 5793 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AJ938153.1 _struct_ref.pdbx_db_accession 62750861 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GGUUGGGUUGGGAAGUAUCAUGGCUAAUCACCAUGAUGCAAUCGGGUUGAACACUUAAUUGGGUUAAAACGGUGGGGGAC GAUCCCGUAACAUCCGUCCUAACGGCGACAGACUGCACGGCCCUGCCUCUUAGGUGUGUUCAAUGAACAGUCGUUCCGAA AGGAAGCAUCCGGUAUCCCAAGACAAUC ; _struct_ref.pdbx_align_begin 1502 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4P8Z _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 188 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 62750861 _struct_ref_seq.db_align_beg 1502 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1689 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 188 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4P8Z _struct_ref_seq_dif.mon_id C _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 140 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name GB _struct_ref_seq_dif.pdbx_seq_db_accession_code 62750861 _struct_ref_seq_dif.db_mon_id U _struct_ref_seq_dif.pdbx_seq_db_seq_num 1641 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 140 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu . _exptl.absorpt_correction_T_max . _exptl.absorpt_correction_T_min . _exptl.absorpt_correction_type . _exptl.absorpt_process_details . _exptl.entry_id 4P8Z _exptl.crystals_number . _exptl.details . _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details . # _exptl_crystal.colour . _exptl_crystal.density_diffrn . _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_method . _exptl_crystal.density_percent_sol 39.58 _exptl_crystal.description . _exptl_crystal.F_000 . _exptl_crystal.id 1 _exptl_crystal.preparation . _exptl_crystal.size_max . _exptl_crystal.size_mid . _exptl_crystal.size_min . _exptl_crystal.size_rad . _exptl_crystal.colour_lustre . _exptl_crystal.colour_modifier . _exptl_crystal.colour_primary . _exptl_crystal.density_meas . _exptl_crystal.density_meas_esd . _exptl_crystal.density_meas_gt . _exptl_crystal.density_meas_lt . _exptl_crystal.density_meas_temp . _exptl_crystal.density_meas_temp_esd . _exptl_crystal.density_meas_temp_gt . _exptl_crystal.density_meas_temp_lt . _exptl_crystal.pdbx_crystal_image_url . _exptl_crystal.pdbx_crystal_image_format . _exptl_crystal.pdbx_mosaicity . _exptl_crystal.pdbx_mosaicity_esd . # _exptl_crystal_grow.apparatus . _exptl_crystal_grow.atmosphere . _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details . _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref . _exptl_crystal_grow.pH . _exptl_crystal_grow.pressure . _exptl_crystal_grow.pressure_esd . _exptl_crystal_grow.seeding . _exptl_crystal_grow.seeding_ref . _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details . _exptl_crystal_grow.temp_esd . _exptl_crystal_grow.time . _exptl_crystal_grow.pdbx_details '0.1 M Sodium citrate tribasic dihydrate pH 5.0, 30% v/v Jeffamine ED-2001 pH 7.0' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.ambient_environment . _diffrn.ambient_temp 100 _diffrn.ambient_temp_details . _diffrn.ambient_temp_esd . _diffrn.crystal_id 1 _diffrn.crystal_support . _diffrn.crystal_treatment . _diffrn.details . _diffrn.id 1 _diffrn.ambient_pressure . _diffrn.ambient_pressure_esd . _diffrn.ambient_pressure_gt . _diffrn.ambient_pressure_lt . _diffrn.ambient_temp_gt . _diffrn.ambient_temp_lt . # _diffrn_detector.details . _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean . _diffrn_detector.dtime . _diffrn_detector.pdbx_frames_total . _diffrn_detector.pdbx_collection_time_total . _diffrn_detector.pdbx_collection_date 2013-03-14 # _diffrn_radiation.collimation . _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge . _diffrn_radiation.inhomogeneity . _diffrn_radiation.monochromator . _diffrn_radiation.polarisn_norm . _diffrn_radiation.polarisn_ratio . _diffrn_radiation.probe . _diffrn_radiation.type . _diffrn_radiation.xray_symbol . _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list . _diffrn_radiation.pdbx_wavelength . _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer . _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98011 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current . _diffrn_source.details . _diffrn_source.diffrn_id 1 _diffrn_source.power . _diffrn_source.size . _diffrn_source.source SYNCHROTRON _diffrn_source.target . _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.voltage . _diffrn_source.take-off_angle . _diffrn_source.pdbx_wavelength_list 0.98011 _diffrn_source.pdbx_wavelength . _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate . _reflns.entry_id 4P8Z _reflns.data_reduction_details . _reflns.data_reduction_method . _reflns.d_resolution_high 3.85 _reflns.d_resolution_low 28.55 _reflns.details . _reflns.limit_h_max . _reflns.limit_h_min . _reflns.limit_k_max . _reflns.limit_k_min . _reflns.limit_l_max . _reflns.limit_l_min . _reflns.number_all 34494 _reflns.number_obs 5021 _reflns.observed_criterion . _reflns.observed_criterion_F_max . _reflns.observed_criterion_F_min . _reflns.observed_criterion_I_max . _reflns.observed_criterion_I_min . _reflns.observed_criterion_sigma_F . _reflns.observed_criterion_sigma_I . _reflns.percent_possible_obs 99.6 _reflns.R_free_details . _reflns.Rmerge_F_all . _reflns.Rmerge_F_obs . _reflns.Friedel_coverage . _reflns.number_gt . _reflns.threshold_expression . _reflns.pdbx_redundancy 6.87 _reflns.pdbx_Rmerge_I_obs . _reflns.pdbx_Rmerge_I_all . _reflns.pdbx_Rsym_value . _reflns.pdbx_netI_over_av_sigmaI . _reflns.pdbx_netI_over_sigmaI 9.63 _reflns.pdbx_res_netI_over_av_sigmaI_2 . _reflns.pdbx_res_netI_over_sigmaI_2 . _reflns.pdbx_chi_squared . _reflns.pdbx_scaling_rejects . _reflns.pdbx_d_res_high_opt . _reflns.pdbx_d_res_low_opt . _reflns.pdbx_d_res_opt_method . _reflns.phase_calculation_details . _reflns.pdbx_Rrim_I_all . _reflns.pdbx_Rpim_I_all . _reflns.pdbx_d_opt . _reflns.pdbx_number_measured_all . _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.aniso_B[1][1] . _refine.aniso_B[1][2] . _refine.aniso_B[1][3] . _refine.aniso_B[2][2] . _refine.aniso_B[2][3] . _refine.aniso_B[3][3] . _refine.B_iso_max . _refine.B_iso_mean . _refine.B_iso_min . _refine.correlation_coeff_Fo_to_Fc . _refine.correlation_coeff_Fo_to_Fc_free . _refine.details . _refine.diff_density_max . _refine.diff_density_max_esd . _refine.diff_density_min . _refine.diff_density_min_esd . _refine.diff_density_rms . _refine.diff_density_rms_esd . _refine.entry_id 4P8Z _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details . _refine.ls_abs_structure_Flack . _refine.ls_abs_structure_Flack_esd . _refine.ls_abs_structure_Rogers . _refine.ls_abs_structure_Rogers_esd . _refine.ls_d_res_high 3.850 _refine.ls_d_res_low 28.55 _refine.ls_extinction_coef . _refine.ls_extinction_coef_esd . _refine.ls_extinction_expression . _refine.ls_extinction_method . _refine.ls_goodness_of_fit_all . _refine.ls_goodness_of_fit_all_esd . _refine.ls_goodness_of_fit_obs . _refine.ls_goodness_of_fit_obs_esd . _refine.ls_hydrogen_treatment . _refine.ls_matrix_type . _refine.ls_number_constraints . _refine.ls_number_parameters . _refine.ls_number_reflns_all . _refine.ls_number_reflns_obs 5010 _refine.ls_number_reflns_R_free 251 _refine.ls_number_reflns_R_work . _refine.ls_number_restraints . _refine.ls_percent_reflns_obs 99.68 _refine.ls_percent_reflns_R_free 5.01 _refine.ls_R_factor_all . _refine.ls_R_factor_obs 0.2481 _refine.ls_R_factor_R_free 0.2977 _refine.ls_R_factor_R_free_error . _refine.ls_R_factor_R_free_error_details . _refine.ls_R_factor_R_work 0.2455 _refine.ls_R_Fsqd_factor_obs . _refine.ls_R_I_factor_obs . _refine.ls_redundancy_reflns_all . _refine.ls_redundancy_reflns_obs . _refine.ls_restrained_S_all . _refine.ls_restrained_S_obs . _refine.ls_shift_over_esd_max . _refine.ls_shift_over_esd_mean . _refine.ls_structure_factor_coef . _refine.ls_weighting_details . _refine.ls_weighting_scheme . _refine.ls_wR_factor_all . _refine.ls_wR_factor_obs . _refine.ls_wR_factor_R_free . _refine.ls_wR_factor_R_work . _refine.occupancy_max . _refine.occupancy_min . _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol . _refine.solvent_model_param_ksol . _refine.ls_R_factor_gt . _refine.ls_goodness_of_fit_gt . _refine.ls_goodness_of_fit_ref . _refine.ls_shift_over_su_max . _refine.ls_shift_over_su_max_lt . _refine.ls_shift_over_su_mean . _refine.ls_shift_over_su_mean_lt . _refine.pdbx_ls_sigma_I . _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd . _refine.pdbx_data_cutoff_high_absF . _refine.pdbx_data_cutoff_high_rms_absF . _refine.pdbx_data_cutoff_low_absF . _refine.pdbx_isotropic_thermal_model . _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4P95 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details . _refine.pdbx_stereochem_target_val_spec_case . _refine.pdbx_overall_ESU_R . _refine.pdbx_overall_ESU_R_Free . _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii . _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R . _refine.pdbx_density_correlation . _refine.pdbx_pd_number_of_powder_patterns . _refine.pdbx_pd_number_of_points . _refine.pdbx_pd_meas_number_of_points . _refine.pdbx_pd_proc_ls_prof_R_factor . _refine.pdbx_pd_proc_ls_prof_wR_factor . _refine.pdbx_pd_Marquardt_correlation_coeff . _refine.pdbx_pd_Fsqrd_R_factor . _refine.pdbx_pd_ls_matrix_band_width . _refine.pdbx_overall_phase_error 35.95 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI . _refine.pdbx_overall_SU_R_free_Blow_DPI . _refine.pdbx_overall_SU_R_Blow_DPI . _refine.pdbx_TLS_residual_ADP_flag . _refine.pdbx_diffrn_id 1 _refine.overall_SU_B . _refine.overall_SU_ML 0.61 _refine.overall_SU_R_Cruickshank_DPI . _refine.overall_SU_R_free . _refine.overall_FOM_free_R_set . _refine.overall_FOM_work_R_set . # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 4014 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 4014 _refine_hist.d_res_high 3.850 _refine_hist.d_res_low 28.55 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' . 0.001 . 4490 . f_bond_d . . 'X-RAY DIFFRACTION' . 0.842 . 6997 . f_angle_d . . 'X-RAY DIFFRACTION' . 12.918 . 2253 . f_dihedral_angle_d . . 'X-RAY DIFFRACTION' . 0.080 . 940 . f_chiral_restr . . 'X-RAY DIFFRACTION' . 0.002 . 188 . f_plane_restr . . # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error 'X-RAY DIFFRACTION' 3.8500 4.8467 . . 122 2320 99.00 . . . 0.4005 . 0.3302 . . . . . . . . 'X-RAY DIFFRACTION' 4.8467 28.5537 . . 129 2439 100.00 . . . 0.2685 . 0.2207 . . . . . . . . # _struct.entry_id 4P8Z _struct.title 'Speciation of a group I intron into a lariat capping ribozyme' _struct.pdbx_model_details . _struct.pdbx_formula_weight . _struct.pdbx_formula_weight_method . _struct.pdbx_model_type_details . _struct.pdbx_CASP_flag . # _struct_keywords.entry_id 4P8Z _struct_keywords.text 'Catalytic RNA, Lariat-capping ribozyme, Branching reaction, Lariat fold, RNA' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 188 N3 ? ? A G 1 A C 188 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 188 O2 ? ? A G 1 A C 188 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 188 N4 ? ? A G 1 A C 188 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 187 O2 ? ? A G 2 A U 187 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 187 N3 ? ? A G 2 A U 187 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 186 N1 ? ? A U 3 A A 186 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 186 N6 ? ? A U 3 A A 186 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 185 N1 ? ? A U 4 A A 185 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 A A 183 N6 ? ? A G 5 A A 183 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog10 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 184 N3 ? ? A G 5 A C 184 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog11 hydrog ? ? A G 6 N2 ? ? ? 1_555 A A 161 N1 ? ? A G 6 A A 161 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 A A 183 N1 ? ? A G 6 A A 183 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog13 hydrog ? ? A G 6 O6 ? ? ? 1_555 A A 183 N6 ? ? A G 6 A A 183 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog14 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 181 N1 ? ? A U 8 A A 181 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 181 N6 ? ? A U 8 A A 181 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 180 N1 ? ? A U 9 A A 180 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 180 N6 ? ? A U 9 A A 180 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 179 N3 ? ? A G 10 A C 179 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog19 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 178 N3 ? ? A G 11 A C 178 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 178 O2 ? ? A G 11 A C 178 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 178 N4 ? ? A G 11 A C 178 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 179 N3 ? ? A G 11 A C 179 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 179 O2 ? ? A G 11 A C 179 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 179 N4 ? ? A G 11 A C 179 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 177 N3 ? ? A G 12 A C 177 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 177 O2 ? ? A G 12 A C 177 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 177 N4 ? ? A G 12 A C 177 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 15 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 15 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 15 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 16 N3 ? ? ? 1_555 A G 38 O6 ? ? A U 16 A G 38 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog32 hydrog ? ? A U 16 O2 ? ? ? 1_555 A G 38 N1 ? ? A U 16 A G 38 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog33 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 37 N3 ? ? A A 17 A U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 37 O4 ? ? A A 17 A U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 36 N1 ? ? A U 18 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 36 N6 ? ? A U 18 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 19 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 19 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 19 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 20 N1 ? ? ? 1_555 A U 34 N3 ? ? A A 20 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 34 O4 ? ? A A 20 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 21 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 21 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 21 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 22 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 22 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 22 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 23 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 23 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 23 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 24 O2 ? ? ? 1_555 A A 30 N6 ? ? A C 24 A A 30 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog51 hydrog ? ? A A 27 N1 ? ? ? 1_555 A A 82 N6 ? ? A A 27 A A 82 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog52 hydrog ? ? A A 27 N1 ? ? ? 1_555 A U 83 N3 ? ? A A 27 A U 83 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog53 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 82 N1 ? ? A U 28 A A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 28 O4 ? ? ? 1_555 A A 82 N6 ? ? A U 28 A A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 29 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 29 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 29 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 41 N3 ? ? ? 1_555 A A 146 N6 ? ? A A 41 A A 146 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog59 hydrog ? ? A U 42 N3 ? ? ? 1_555 A G 173 O6 ? ? A U 42 A G 173 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog60 hydrog ? ? A U 42 O2 ? ? ? 1_555 A G 173 N1 ? ? A U 42 A G 173 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog61 hydrog ? ? A C 43 N3 ? ? ? 1_555 A G 172 N1 ? ? A C 43 A G 172 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 43 N4 ? ? ? 1_555 A G 172 O6 ? ? A C 43 A G 172 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 43 O2 ? ? ? 1_555 A G 172 N2 ? ? A C 43 A G 172 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 171 N3 ? ? A G 44 A C 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 171 O2 ? ? A G 44 A C 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 171 N4 ? ? A G 44 A C 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 170 N3 ? ? A G 45 A C 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 170 O2 ? ? A G 45 A C 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 170 N4 ? ? A G 45 A C 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 46 N1 ? ? ? 1_555 A U 144 O4 ? ? A G 46 A U 144 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog71 hydrog ? ? A G 46 O6 ? ? ? 1_555 A U 144 N3 ? ? A G 46 A U 144 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog72 hydrog ? ? A U 47 N3 ? ? ? 1_555 A A 143 N1 ? ? A U 47 A A 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 47 O4 ? ? ? 1_555 A A 143 N6 ? ? A U 47 A A 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 48 N3 ? ? ? 1_555 A A 142 N1 ? ? A U 48 A A 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 48 O4 ? ? ? 1_555 A A 142 N6 ? ? A U 48 A A 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 49 N1 ? ? ? 1_555 A C 141 N3 ? ? A G 49 A C 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 49 N2 ? ? ? 1_555 A C 141 O2 ? ? A G 49 A C 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 49 O6 ? ? ? 1_555 A C 141 N4 ? ? A G 49 A C 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 51 N1 ? ? ? 1_555 A U 139 N3 ? ? A A 51 A U 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A A 51 N6 ? ? ? 1_555 A U 139 O4 ? ? A A 51 A U 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 52 N3 ? ? ? 1_555 A G 138 N1 ? ? A C 52 A G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 52 N4 ? ? ? 1_555 A G 138 O6 ? ? A C 52 A G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 52 O2 ? ? ? 1_555 A G 138 N2 ? ? A C 52 A G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A A 53 N1 ? ? ? 1_555 A U 137 N3 ? ? A A 53 A U 137 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A A 53 N6 ? ? ? 1_555 A U 137 O4 ? ? A A 53 A U 137 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 54 N3 ? ? ? 1_555 A G 136 N1 ? ? A C 54 A G 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A C 54 N4 ? ? ? 1_555 A G 136 O6 ? ? A C 54 A G 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A C 54 O2 ? ? ? 1_555 A G 136 N2 ? ? A C 54 A G 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A U 55 N3 ? ? ? 1_555 A U 59 O2 ? ? A U 55 A U 59 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog90 hydrog ? ? A U 55 O2 ? ? ? 1_555 A U 59 N3 ? ? A U 55 A U 59 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog91 hydrog ? ? A A 58 N3 ? ? ? 1_555 A G 134 N2 ? ? A A 58 A G 134 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog92 hydrog ? ? A U 60 N3 ? ? ? 1_555 A U 124 O2 ? ? A U 60 A U 124 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog93 hydrog ? ? A U 60 O4 ? ? ? 1_555 A U 124 N3 ? ? A U 60 A U 124 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog94 hydrog ? ? A G 61 N1 ? ? ? 1_555 A C 123 N3 ? ? A G 61 A C 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 61 N2 ? ? ? 1_555 A C 123 O2 ? ? A G 61 A C 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 61 O6 ? ? ? 1_555 A C 123 N4 ? ? A G 61 A C 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A G 62 N1 ? ? ? 1_555 A C 122 N3 ? ? A G 62 A C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A G 62 N2 ? ? ? 1_555 A C 122 O2 ? ? A G 62 A C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A G 62 O6 ? ? ? 1_555 A C 122 N4 ? ? A G 62 A C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A G 62 N1 ? ? ? 1_555 A C 123 N3 ? ? A G 62 A C 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A G 62 N2 ? ? ? 1_555 A C 123 O2 ? ? A G 62 A C 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A G 62 O6 ? ? ? 1_555 A C 123 N4 ? ? A G 62 A C 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A G 63 N1 ? ? ? 1_555 A C 121 N3 ? ? A G 63 A C 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A G 63 N2 ? ? ? 1_555 A C 121 O2 ? ? A G 63 A C 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A G 63 O6 ? ? ? 1_555 A C 121 N4 ? ? A G 63 A C 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A U 64 N3 ? ? ? 1_555 A G 120 O6 ? ? A U 64 A G 120 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog107 hydrog ? ? A U 64 O2 ? ? ? 1_555 A G 120 N1 ? ? A U 64 A G 120 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog108 hydrog ? ? A U 65 N3 ? ? ? 1_555 A G 119 O6 ? ? A U 65 A G 119 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog109 hydrog ? ? A U 65 O2 ? ? ? 1_555 A G 119 N1 ? ? A U 65 A G 119 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog110 hydrog ? ? A A 67 N1 ? ? ? 1_555 A A 102 N6 ? ? A A 67 A A 102 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog111 hydrog ? ? A A 67 N1 ? ? ? 1_555 A C 103 N4 ? ? A A 67 A C 103 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog112 hydrog ? ? A A 67 N6 ? ? ? 1_555 A C 103 N3 ? ? A A 67 A C 103 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog113 hydrog ? ? A A 69 N1 ? ? ? 1_555 A U 97 N3 ? ? A A 69 A U 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A A 69 N6 ? ? ? 1_555 A U 97 O4 ? ? A A 69 A U 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A A 69 N6 ? ? ? 1_555 A C 106 O2 ? ? A A 69 A C 106 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog116 hydrog ? ? A C 70 N3 ? ? ? 1_555 A G 96 N1 ? ? A C 70 A G 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A C 70 N4 ? ? ? 1_555 A G 96 O6 ? ? A C 70 A G 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? A C 70 O2 ? ? ? 1_555 A G 96 N2 ? ? A C 70 A G 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? A G 71 N1 ? ? ? 1_555 A C 95 N3 ? ? A G 71 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? A G 71 N2 ? ? ? 1_555 A C 95 O2 ? ? A G 71 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? A G 71 O6 ? ? ? 1_555 A C 95 N4 ? ? A G 71 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? A G 72 N2 ? ? ? 1_555 A A 90 N3 ? ? A G 72 A A 90 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog123 hydrog ? ? A G 72 N1 ? ? ? 1_555 A C 94 N3 ? ? A G 72 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A G 72 N2 ? ? ? 1_555 A C 94 O2 ? ? A G 72 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? A G 72 O6 ? ? ? 1_555 A C 94 N4 ? ? A G 72 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? A U 73 N3 ? ? ? 1_555 A A 92 N1 ? ? A U 73 A A 92 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog127 hydrog ? ? A U 73 O2 ? ? ? 1_555 A A 92 N6 ? ? A U 73 A A 92 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog128 hydrog ? ? A G 75 N1 ? ? ? 1_555 A C 86 N3 ? ? A G 75 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? A G 75 N2 ? ? ? 1_555 A C 86 O2 ? ? A G 75 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? A G 75 O6 ? ? ? 1_555 A C 86 N4 ? ? A G 75 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? A G 76 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 76 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? A G 76 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 76 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? A G 76 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 76 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? A G 76 N1 ? ? ? 1_555 A C 86 N3 ? ? A G 76 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? A G 76 N2 ? ? ? 1_555 A C 86 O2 ? ? A G 76 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? A G 76 O6 ? ? ? 1_555 A C 86 N4 ? ? A G 76 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? A G 77 N1 ? ? ? 1_555 A C 84 N3 ? ? A G 77 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? A G 77 N2 ? ? ? 1_555 A C 84 O2 ? ? A G 77 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? A G 77 O6 ? ? ? 1_555 A C 84 N4 ? ? A G 77 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? A G 77 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 77 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? A G 77 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 77 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? A G 77 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 77 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? A C 98 N3 ? ? ? 1_555 A G 105 N1 ? ? A C 98 A G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? A C 98 N4 ? ? ? 1_555 A G 105 O6 ? ? A C 98 A G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? A C 98 O2 ? ? ? 1_555 A G 105 N2 ? ? A C 98 A G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? A C 99 N3 ? ? ? 1_555 A G 104 N1 ? ? A C 99 A G 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? A C 99 N4 ? ? ? 1_555 A G 104 O6 ? ? A C 99 A G 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? A C 99 O2 ? ? ? 1_555 A G 104 N2 ? ? A C 99 A G 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? A U 100 O2 ? ? ? 1_555 A C 103 N4 ? ? A U 100 A C 103 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog150 hydrog ? ? A A 110 N1 ? ? ? 1_555 A A 168 N6 ? ? A A 110 A A 168 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog151 hydrog ? ? A A 110 N6 ? ? ? 1_555 A A 168 N7 ? ? A A 110 A A 168 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog152 hydrog ? ? A G 111 N1 ? ? ? 1_555 A C 152 N3 ? ? A G 111 A C 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? A G 111 N2 ? ? ? 1_555 A C 152 O2 ? ? A G 111 A C 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? A G 111 O6 ? ? ? 1_555 A C 152 N4 ? ? A G 111 A C 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? A A 112 N1 ? ? ? 1_555 A U 151 N3 ? ? A A 112 A U 151 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog156 hydrog ? ? A A 112 N6 ? ? ? 1_555 A U 151 O4 ? ? A A 112 A U 151 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog157 hydrog ? ? A C 113 N3 ? ? ? 1_555 A G 150 N1 ? ? A C 113 A G 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog158 hydrog ? ? A C 113 N4 ? ? ? 1_555 A G 150 O6 ? ? A C 113 A G 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog159 hydrog ? ? A C 113 O2 ? ? ? 1_555 A G 150 N2 ? ? A C 113 A G 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog160 hydrog ? ? A U 114 N3 ? ? ? 1_555 A A 149 N1 ? ? A U 114 A A 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog161 hydrog ? ? A U 114 O4 ? ? ? 1_555 A A 149 N6 ? ? A U 114 A A 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog162 hydrog ? ? A G 115 N1 ? ? ? 1_555 A C 148 N3 ? ? A G 115 A C 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog163 hydrog ? ? A G 115 N2 ? ? ? 1_555 A C 148 O2 ? ? A G 115 A C 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog164 hydrog ? ? A G 115 O6 ? ? ? 1_555 A C 148 N4 ? ? A G 115 A C 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog165 hydrog ? ? A G 125 N1 ? ? ? 1_555 A U 135 O2 ? ? A G 125 A U 135 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog166 hydrog ? ? A G 125 O6 ? ? ? 1_555 A U 135 N3 ? ? A G 125 A U 135 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog167 hydrog ? ? A C 126 N3 ? ? ? 1_555 A G 134 N1 ? ? A C 126 A G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog168 hydrog ? ? A C 126 N4 ? ? ? 1_555 A G 134 O6 ? ? A C 126 A G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog169 hydrog ? ? A C 126 O2 ? ? ? 1_555 A G 134 N2 ? ? A C 126 A G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog170 hydrog ? ? A C 127 N3 ? ? ? 1_555 A G 133 N1 ? ? A C 127 A G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog171 hydrog ? ? A C 127 N4 ? ? ? 1_555 A G 133 O6 ? ? A C 127 A G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog172 hydrog ? ? A C 127 O2 ? ? ? 1_555 A G 133 N2 ? ? A C 127 A G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog173 hydrog ? ? A U 128 O2 ? ? ? 1_555 A A 132 N6 ? ? A U 128 A A 132 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog174 hydrog ? ? A G 145 O6 ? ? ? 1_555 A C 170 N4 ? ? A G 145 A C 170 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog175 hydrog ? ? A A 146 N6 ? ? ? 1_555 A U 174 O2 ? ? A A 146 A U 174 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog176 hydrog ? ? A A 146 N7 ? ? ? 1_555 A U 174 N3 ? ? A A 146 A U 174 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog177 hydrog ? ? A A 147 N1 ? ? ? 1_555 A C 170 N4 ? ? A A 147 A C 170 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog178 hydrog ? ? A A 147 N1 ? ? ? 1_555 A C 171 N4 ? ? A A 147 A C 171 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog179 hydrog ? ? A U 154 N3 ? ? ? 1_555 A A 165 N1 ? ? A U 154 A A 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog180 hydrog ? ? A U 154 O4 ? ? ? 1_555 A A 165 N6 ? ? A U 154 A A 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog181 hydrog ? ? A U 155 N3 ? ? ? 1_555 A A 164 N1 ? ? A U 155 A A 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog182 hydrog ? ? A U 155 O4 ? ? ? 1_555 A A 164 N6 ? ? A U 155 A A 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog183 hydrog ? ? A C 156 N3 ? ? ? 1_555 A G 163 N1 ? ? A C 156 A G 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog184 hydrog ? ? A C 156 N4 ? ? ? 1_555 A G 163 O6 ? ? A C 156 A G 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog185 hydrog ? ? A C 156 O2 ? ? ? 1_555 A G 163 N2 ? ? A C 156 A G 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog186 hydrog ? ? A C 157 N3 ? ? ? 1_555 A G 162 N1 ? ? A C 157 A G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog187 hydrog ? ? A C 157 N4 ? ? ? 1_555 A G 162 O6 ? ? A C 157 A G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog188 hydrog ? ? A C 157 O2 ? ? ? 1_555 A G 162 N2 ? ? A C 157 A G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog189 hydrog ? ? A G 158 N2 ? ? ? 1_555 A A 161 N7 ? ? A G 158 A A 161 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog190 hydrog ? ? A A 159 N6 ? ? ? 1_555 A A 185 N3 ? ? A A 159 A A 185 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 4P8Z _atom_sites.fract_transf_matrix[1][1] 0.019026 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011254 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009461 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 U 8 8 8 U U A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 G 11 11 11 G G A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 U 16 16 16 U U A . n A 1 17 A 17 17 17 A A A . n A 1 18 U 18 18 18 U U A . n A 1 19 C 19 19 19 C C A . n A 1 20 A 20 20 20 A A A . n A 1 21 U 21 21 21 U U A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 C 24 24 24 C C A . n A 1 25 U 25 25 25 U U A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 U 28 28 28 U U A . n A 1 29 C 29 29 29 C C A . n A 1 30 A 30 30 30 A A A . n A 1 31 C 31 31 31 C C A . n A 1 32 C 32 32 32 C C A . n A 1 33 A 33 33 33 A A A . n A 1 34 U 34 34 34 U U A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 U 37 37 37 U U A . n A 1 38 G 38 38 38 G G A . n A 1 39 C 39 39 39 C C A . n A 1 40 A 40 40 40 A A A . n A 1 41 A 41 41 41 A A A . n A 1 42 U 42 42 42 U U A . n A 1 43 C 43 43 43 C C A . n A 1 44 G 44 44 44 G G A . n A 1 45 G 45 45 45 G G A . n A 1 46 G 46 46 46 G G A . n A 1 47 U 47 47 47 U U A . n A 1 48 U 48 48 48 U U A . n A 1 49 G 49 49 49 G G A . n A 1 50 A 50 50 50 A A A . n A 1 51 A 51 51 51 A A A . n A 1 52 C 52 52 52 C C A . n A 1 53 A 53 53 53 A A A . n A 1 54 C 54 54 54 C C A . n A 1 55 U 55 55 55 U U A . n A 1 56 U 56 56 56 U U A . n A 1 57 A 57 57 57 A A A . n A 1 58 A 58 58 58 A A A . n A 1 59 U 59 59 59 U U A . n A 1 60 U 60 60 60 U U A . n A 1 61 G 61 61 61 G G A . n A 1 62 G 62 62 62 G G A . n A 1 63 G 63 63 63 G G A . n A 1 64 U 64 64 64 U U A . n A 1 65 U 65 65 65 U U A . n A 1 66 A 66 66 66 A A A . n A 1 67 A 67 67 67 A A A . n A 1 68 A 68 68 68 A A A . n A 1 69 A 69 69 69 A A A . n A 1 70 C 70 70 70 C C A . n A 1 71 G 71 71 71 G G A . n A 1 72 G 72 72 72 G G A . n A 1 73 U 73 73 73 U U A . n A 1 74 G 74 74 74 G G A . n A 1 75 G 75 75 75 G G A . n A 1 76 G 76 76 76 G G A . n A 1 77 G 77 77 77 G G A . n A 1 78 G 78 78 78 G G A . n A 1 79 A 79 79 79 A A A . n A 1 80 C 80 80 80 C C A . n A 1 81 G 81 81 81 G G A . n A 1 82 A 82 82 82 A A A . n A 1 83 U 83 83 83 U U A . n A 1 84 C 84 84 84 C C A . n A 1 85 C 85 85 85 C C A . n A 1 86 C 86 86 86 C C A . n A 1 87 G 87 87 87 G G A . n A 1 88 U 88 88 88 U U A . n A 1 89 A 89 89 89 A A A . n A 1 90 A 90 90 90 A A A . n A 1 91 C 91 91 91 C C A . n A 1 92 A 92 92 92 A A A . n A 1 93 U 93 93 93 U U A . n A 1 94 C 94 94 94 C C A . n A 1 95 C 95 95 95 C C A . n A 1 96 G 96 96 96 G G A . n A 1 97 U 97 97 97 U U A . n A 1 98 C 98 98 98 C C A . n A 1 99 C 99 99 99 C C A . n A 1 100 U 100 100 100 U U A . n A 1 101 A 101 101 101 A A A . n A 1 102 A 102 102 102 A A A . n A 1 103 C 103 103 103 C C A . n A 1 104 G 104 104 104 G G A . n A 1 105 G 105 105 105 G G A . n A 1 106 C 106 106 106 C C A . n A 1 107 G 107 107 107 G G A . n A 1 108 A 108 108 108 A A A . n A 1 109 C 109 109 109 C C A . n A 1 110 A 110 110 110 A A A . n A 1 111 G 111 111 111 G G A . n A 1 112 A 112 112 112 A A A . n A 1 113 C 113 113 113 C C A . n A 1 114 U 114 114 114 U U A . n A 1 115 G 115 115 115 G G A . n A 1 116 C 116 116 116 C C A . n A 1 117 A 117 117 117 A A A . n A 1 118 C 118 118 118 C C A . n A 1 119 G 119 119 119 G G A . n A 1 120 G 120 120 120 G G A . n A 1 121 C 121 121 121 C C A . n A 1 122 C 122 122 122 C C A . n A 1 123 C 123 123 123 C C A . n A 1 124 U 124 124 124 U U A . n A 1 125 G 125 125 125 G G A . n A 1 126 C 126 126 126 C C A . n A 1 127 C 127 127 127 C C A . n A 1 128 U 128 128 128 U U A . n A 1 129 C 129 129 129 C C A . n A 1 130 U 130 130 130 U U A . n A 1 131 U 131 131 131 U U A . n A 1 132 A 132 132 132 A A A . n A 1 133 G 133 133 133 G G A . n A 1 134 G 134 134 134 G G A . n A 1 135 U 135 135 135 U U A . n A 1 136 G 136 136 136 G G A . n A 1 137 U 137 137 137 U U A . n A 1 138 G 138 138 138 G G A . n A 1 139 U 139 139 139 U U A . n A 1 140 C 140 140 140 C C A . n A 1 141 C 141 141 141 C C A . n A 1 142 A 142 142 142 A A A . n A 1 143 A 143 143 143 A A A . n A 1 144 U 144 144 144 U U A . n A 1 145 G 145 145 145 G G A . n A 1 146 A 146 146 146 A A A . n A 1 147 A 147 147 147 A A A . n A 1 148 C 148 148 148 C C A . n A 1 149 A 149 149 149 A A A . n A 1 150 G 150 150 150 G G A . n A 1 151 U 151 151 151 U U A . n A 1 152 C 152 152 152 C C A . n A 1 153 G 153 153 153 G G A . n A 1 154 U 154 154 154 U U A . n A 1 155 U 155 155 155 U U A . n A 1 156 C 156 156 156 C C A . n A 1 157 C 157 157 157 C C A . n A 1 158 G 158 158 158 G G A . n A 1 159 A 159 159 159 A A A . n A 1 160 A 160 160 160 A A A . n A 1 161 A 161 161 161 A A A . n A 1 162 G 162 162 162 G G A . n A 1 163 G 163 163 163 G G A . n A 1 164 A 164 164 164 A A A . n A 1 165 A 165 165 165 A A A . n A 1 166 G 166 166 166 G G A . n A 1 167 C 167 167 167 C C A . n A 1 168 A 168 168 168 A A A . n A 1 169 U 169 169 169 U U A . n A 1 170 C 170 170 170 C C A . n A 1 171 C 171 171 171 C C A . n A 1 172 G 172 172 172 G G A . n A 1 173 G 173 173 173 G G A . n A 1 174 U 174 174 174 U U A . n A 1 175 A 175 175 175 A A A . n A 1 176 U 176 176 176 U U A . n A 1 177 C 177 177 177 C C A . n A 1 178 C 178 178 178 C C A . n A 1 179 C 179 179 179 C C A . n A 1 180 A 180 180 180 A A A . n A 1 181 A 181 181 181 A A A . n A 1 182 G 182 182 182 G G A . n A 1 183 A 183 183 183 A A A . n A 1 184 C 184 184 184 C C A . n A 1 185 A 185 185 185 A A A . n A 1 186 A 186 186 186 A A A . n A 1 187 U 187 187 187 U U A . n A 1 188 C 188 188 188 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 28680 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-05-28 2 'Structure model' 1 1 2014-10-01 3 'Structure model' 1 2 2017-10-04 4 'Structure model' 1 3 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Source and taxonomy' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_entity_src_syn 5 3 'Structure model' pdbx_struct_assembly 6 3 'Structure model' pdbx_struct_assembly_prop 7 3 'Structure model' pdbx_struct_oper_list 8 4 'Structure model' chem_comp_atom 9 4 'Structure model' chem_comp_bond 10 4 'Structure model' database_2 11 4 'Structure model' pdbx_initial_refinement_model 12 4 'Structure model' refine_hist # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 3 'Structure model' '_pdbx_database_status.pdb_format_compatible' 4 3 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 5 3 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 6 3 'Structure model' '_pdbx_struct_assembly_prop.type' 7 3 'Structure model' '_pdbx_struct_assembly_prop.value' 8 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 9 4 'Structure model' '_database_2.pdbx_DOI' 10 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details . _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 9.9188 _pdbx_refine_tls.origin_y -0.5759 _pdbx_refine_tls.origin_z -16.7119 _pdbx_refine_tls.T[1][1] 1.6212 _pdbx_refine_tls.T[1][1]_esd . _pdbx_refine_tls.T[1][2] -0.0984 _pdbx_refine_tls.T[1][2]_esd . _pdbx_refine_tls.T[1][3] -0.1729 _pdbx_refine_tls.T[1][3]_esd . _pdbx_refine_tls.T[2][2] 1.1925 _pdbx_refine_tls.T[2][2]_esd . _pdbx_refine_tls.T[2][3] -0.0928 _pdbx_refine_tls.T[2][3]_esd . _pdbx_refine_tls.T[3][3] 1.1305 _pdbx_refine_tls.T[3][3]_esd . _pdbx_refine_tls.L[1][1] 1.1789 _pdbx_refine_tls.L[1][1]_esd . _pdbx_refine_tls.L[1][2] -0.2632 _pdbx_refine_tls.L[1][2]_esd . _pdbx_refine_tls.L[1][3] -1.6798 _pdbx_refine_tls.L[1][3]_esd . _pdbx_refine_tls.L[2][2] 1.3925 _pdbx_refine_tls.L[2][2]_esd . _pdbx_refine_tls.L[2][3] -0.7456 _pdbx_refine_tls.L[2][3]_esd . _pdbx_refine_tls.L[3][3] 3.3798 _pdbx_refine_tls.L[3][3]_esd . _pdbx_refine_tls.S[1][1] -0.0001 _pdbx_refine_tls.S[1][1]_esd . _pdbx_refine_tls.S[1][2] 0.1041 _pdbx_refine_tls.S[1][2]_esd . _pdbx_refine_tls.S[1][3] -0.1262 _pdbx_refine_tls.S[1][3]_esd . _pdbx_refine_tls.S[2][1] -0.2339 _pdbx_refine_tls.S[2][1]_esd . _pdbx_refine_tls.S[2][2] -0.2021 _pdbx_refine_tls.S[2][2]_esd . _pdbx_refine_tls.S[2][3] 0.0352 _pdbx_refine_tls.S[2][3]_esd . _pdbx_refine_tls.S[3][1] -0.2573 _pdbx_refine_tls.S[3][1]_esd . _pdbx_refine_tls.S[3][2] -0.0300 _pdbx_refine_tls.S[3][2]_esd . _pdbx_refine_tls.S[3][3] 0.2015 _pdbx_refine_tls.S[3][3]_esd . # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.beg_auth_asym_id . _pdbx_refine_tls_group.beg_auth_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.end_auth_asym_id . _pdbx_refine_tls_group.end_auth_seq_id . _pdbx_refine_tls_group.selection . _pdbx_refine_tls_group.selection_details all # _software.citation_id ? _software.classification refinement _software.compiler_name . _software.compiler_version . _software.contact_author . _software.contact_author_email . _software.date . _software.description . _software.dependencies . _software.hardware . _software.language . _software.location . _software.mods . _software.name PHENIX _software.os . _software.os_version . _software.type . _software.version '(phenix.refine: 1.8.4_1496)' _software.pdbx_ordinal 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O2'" A C 80 ? ? OP2 A A 82 ? ? 2.14 2 1 OP2 A A 69 ? ? "O2'" A G 105 ? ? 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A C 129 ? ? N1 A C 129 ? ? C2 A C 129 ? ? 123.06 120.30 2.76 0.40 N 2 1 C6 A U 130 ? ? N1 A U 130 ? ? C2 A U 130 ? ? 117.24 121.00 -3.76 0.60 N 3 1 "O3'" A U 130 ? ? P A U 131 ? ? OP2 A U 131 ? ? 83.80 105.20 -21.40 2.20 Y 4 1 "O3'" A U 130 ? ? P A U 131 ? ? OP1 A U 131 ? ? 80.49 105.20 -24.71 2.20 Y 5 1 OP1 A U 131 ? ? P A U 131 ? ? OP2 A U 131 ? ? 133.66 119.60 14.06 1.50 N 6 1 "O3'" A A 146 ? ? P A A 147 ? ? OP2 A A 147 ? ? 80.95 105.20 -24.25 2.20 Y 7 1 "O3'" A A 146 ? ? P A A 147 ? ? OP1 A A 147 ? ? 74.89 105.20 -30.31 2.20 Y 8 1 OP1 A A 147 ? ? P A A 147 ? ? OP2 A A 147 ? ? 140.83 119.60 21.23 1.50 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4P8Z 'double helix' 4P8Z 'a-form double helix' 4P8Z 'hairpin loop' 4P8Z 'bulge loop' 4P8Z 'mismatched base pair' 4P8Z 'internal loop' 4P8Z 'triple helix' 4P8Z 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 188 1_555 -0.361 -0.161 -0.057 -3.733 -2.473 -8.392 1 A_G1:C188_A A 1 ? A 188 ? 19 1 1 A G 2 1_555 A U 187 1_555 -1.857 -0.460 0.350 5.771 -19.585 2.390 2 A_G2:U187_A A 2 ? A 187 ? 28 1 1 A U 3 1_555 A A 186 1_555 -0.936 0.098 -0.488 1.752 -37.092 1.771 3 A_U3:A186_A A 3 ? A 186 ? 20 1 1 A U 4 1_555 A A 185 1_555 0.163 0.525 0.298 -6.049 -11.330 8.647 4 A_U4:A185_A A 4 ? A 185 ? ? ? 1 A G 5 1_555 A C 184 1_555 -0.048 0.155 1.075 1.698 -11.625 9.413 5 A_G5:C184_A A 5 ? A 184 ? ? 1 1 A G 6 1_555 A A 183 1_555 0.864 1.552 0.821 17.254 -14.290 -12.548 6 A_G6:A183_A A 6 ? A 183 ? 8 1 1 A U 8 1_555 A A 181 1_555 0.194 0.084 0.650 -8.729 -21.541 -4.751 7 A_U8:A181_A A 8 ? A 181 ? 20 1 1 A U 9 1_555 A A 180 1_555 -0.186 0.065 0.161 2.929 -14.115 -7.005 8 A_U9:A180_A A 9 ? A 180 ? 20 1 1 A G 10 1_555 A C 179 1_555 0.780 0.345 -0.966 -10.281 -4.693 -3.681 9 A_G10:C179_A A 10 ? A 179 ? ? 1 1 A G 11 1_555 A C 178 1_555 0.168 0.188 -0.804 -7.677 -2.332 -7.090 10 A_G11:C178_A A 11 ? A 178 ? 19 1 1 A G 12 1_555 A C 177 1_555 1.280 0.239 -0.598 -15.598 -10.618 -3.087 11 A_G12:C177_A A 12 ? A 177 ? 19 1 1 A G 15 1_555 A C 39 1_555 -0.800 -0.156 -0.123 -12.877 -9.602 -4.645 12 A_G15:C39_A A 15 ? A 39 ? 19 1 1 A U 16 1_555 A G 38 1_555 1.674 -0.176 0.096 3.256 -2.207 3.872 13 A_U16:G38_A A 16 ? A 38 ? 28 1 1 A A 17 1_555 A U 37 1_555 -0.457 0.278 -0.722 -0.663 -12.230 0.004 14 A_A17:U37_A A 17 ? A 37 ? 20 1 1 A U 18 1_555 A A 36 1_555 -0.267 -0.148 0.065 -4.742 -11.566 -6.511 15 A_U18:A36_A A 18 ? A 36 ? 20 1 1 A C 19 1_555 A G 35 1_555 -0.376 -0.362 0.062 3.408 -16.279 0.141 16 A_C19:G35_A A 19 ? A 35 ? 19 1 1 A A 20 1_555 A U 34 1_555 -0.465 -0.306 0.317 0.653 -5.381 2.637 17 A_A20:U34_A A 20 ? A 34 ? 20 1 1 A U 21 1_555 A A 33 1_555 0.162 -0.144 0.100 9.369 -4.555 1.078 18 A_U21:A33_A A 21 ? A 33 ? 20 1 1 A G 22 1_555 A C 32 1_555 0.765 0.153 -0.275 -5.251 -10.402 7.719 19 A_G22:C32_A A 22 ? A 32 ? 19 1 1 A G 23 1_555 A C 31 1_555 0.390 0.147 -0.780 -21.638 -10.878 -1.624 20 A_G23:C31_A A 23 ? A 31 ? 19 1 1 A C 24 1_555 A A 30 1_555 4.694 -0.613 0.289 -15.715 2.408 -8.201 21 A_C24:A30_A A 24 ? A 30 ? ? ? 1 A G 81 1_555 A C 29 1_555 0.670 -0.195 -0.218 -7.631 -19.048 -5.663 22 A_G81:C29_A A 81 ? A 29 ? 19 1 1 A A 82 1_555 A U 28 1_555 0.164 -0.175 0.434 -5.614 -18.055 -3.476 23 A_A82:U28_A A 82 ? A 28 ? 20 1 1 A U 83 1_555 A A 27 1_555 -0.416 0.505 0.058 23.487 -0.365 4.191 24 A_U83:A27_A A 83 ? A 27 ? ? ? 1 A A 41 1_555 A A 146 1_555 6.161 -1.007 -0.198 13.701 -44.720 60.513 25 A_A41:A146_A A 41 ? A 146 ? ? 5 1 A U 42 1_555 A G 173 1_555 2.111 -0.064 -0.530 2.710 1.692 3.510 26 A_U42:G173_A A 42 ? A 173 ? 28 1 1 A C 43 1_555 A G 172 1_555 0.244 -0.426 -0.459 9.573 4.354 -1.934 27 A_C43:G172_A A 43 ? A 172 ? 19 1 1 A G 44 1_555 A C 171 1_555 0.071 -0.242 -0.266 2.547 -2.632 6.550 28 A_G44:C171_A A 44 ? A 171 ? 19 1 1 A G 45 1_555 A C 170 1_555 0.506 -0.360 -0.570 -9.332 -1.375 -1.282 29 A_G45:C170_A A 45 ? A 170 ? 19 1 1 A G 46 1_555 A U 144 1_555 0.195 -1.546 -0.356 19.497 -1.414 178.117 30 A_G46:U144_A A 46 ? A 144 ? 27 2 1 A U 47 1_555 A A 143 1_555 -0.271 0.016 0.015 17.716 -20.656 2.156 31 A_U47:A143_A A 47 ? A 143 ? 20 1 1 A U 48 1_555 A A 142 1_555 -0.213 0.071 -0.153 5.345 -8.500 5.662 32 A_U48:A142_A A 48 ? A 142 ? 20 1 1 A G 49 1_555 A C 141 1_555 0.409 -0.199 -0.328 -13.073 -13.843 -1.155 33 A_G49:C141_A A 49 ? A 141 ? 19 1 1 A A 51 1_555 A U 139 1_555 -0.586 -0.254 -0.322 5.069 -19.113 -1.977 34 A_A51:U139_A A 51 ? A 139 ? 20 1 1 A C 52 1_555 A G 138 1_555 0.273 -0.064 -0.109 4.295 -5.715 -5.331 35 A_C52:G138_A A 52 ? A 138 ? 19 1 1 A A 53 1_555 A U 137 1_555 0.392 0.399 -0.111 -4.461 -7.778 2.175 36 A_A53:U137_A A 53 ? A 137 ? 20 1 1 A C 54 1_555 A G 136 1_555 0.047 -0.076 0.086 8.907 -11.645 5.924 37 A_C54:G136_A A 54 ? A 136 ? 19 1 1 A U 55 1_555 A U 59 1_555 2.482 3.280 0.174 25.567 1.791 176.381 38 A_U55:U59_A A 55 ? A 59 ? 13 2 1 A G 119 1_555 A U 65 1_555 -1.996 -0.783 -0.122 6.743 -7.894 -4.319 39 A_G119:U65_A A 119 ? A 65 ? 28 1 1 A G 120 1_555 A U 64 1_555 -2.027 -0.386 -0.362 -0.454 -10.498 4.560 40 A_G120:U64_A A 120 ? A 64 ? 28 1 1 A C 121 1_555 A G 63 1_555 -0.243 -0.110 -0.376 8.499 -7.519 -0.831 41 A_C121:G63_A A 121 ? A 63 ? 19 1 1 A C 122 1_555 A G 62 1_555 -0.150 -0.158 -0.739 10.239 4.560 -5.789 42 A_C122:G62_A A 122 ? A 62 ? 19 1 1 A C 123 1_555 A G 61 1_555 0.596 -0.273 -0.910 18.565 4.880 -9.371 43 A_C123:G61_A A 123 ? A 61 ? 19 1 1 A U 124 1_555 A U 60 1_555 1.766 -1.781 0.026 27.264 -12.673 3.203 44 A_U124:U60_A A 124 ? A 60 ? 16 1 1 A G 125 1_555 A U 135 1_555 -1.376 -0.076 0.108 0.087 -12.480 1.065 45 A_G125:U135_A A 125 ? A 135 ? 28 1 1 A C 126 1_555 A G 134 1_555 0.269 -0.606 -0.031 5.993 -20.613 2.216 46 A_C126:G134_A A 126 ? A 134 ? 19 1 1 A C 127 1_555 A G 133 1_555 -0.743 -0.169 -0.072 -6.395 -4.457 0.682 47 A_C127:G133_A A 127 ? A 133 ? 19 1 1 A U 128 1_555 A A 132 1_555 7.006 -3.092 0.663 -0.506 -11.156 -27.231 48 A_U128:A132_A A 128 ? A 132 ? ? ? 1 A A 92 1_555 A U 73 1_555 0.060 1.344 0.715 14.262 7.021 143.829 49 A_A92:U73_A A 92 ? A 73 ? 21 2 1 A C 94 1_555 A G 72 1_555 -0.598 -0.182 -0.426 9.369 -11.614 2.328 50 A_C94:G72_A A 94 ? A 72 ? 19 1 1 A C 95 1_555 A G 71 1_555 -0.170 -0.083 -0.134 4.883 -3.175 1.355 51 A_C95:G71_A A 95 ? A 71 ? 19 1 1 A G 96 1_555 A C 70 1_555 -0.264 -0.319 -0.281 4.999 -7.522 -2.166 52 A_G96:C70_A A 96 ? A 70 ? 19 1 1 A U 97 1_555 A A 69 1_555 0.207 -0.192 -0.324 14.902 -8.787 5.084 53 A_U97:A69_A A 97 ? A 69 ? 20 1 1 A C 98 1_555 A G 105 1_555 -0.534 0.013 0.180 1.425 -16.559 5.752 54 A_C98:G105_A A 98 ? A 105 ? 19 1 1 A C 99 1_555 A G 104 1_555 -0.154 0.065 -0.312 13.716 9.286 2.180 55 A_C99:G104_A A 99 ? A 104 ? 19 1 1 A A 67 1_555 A C 103 1_555 0.239 -1.369 -0.699 15.428 14.698 170.387 56 A_A67:C103_A A 67 ? A 103 ? 26 2 1 A G 75 1_555 A C 86 1_555 -0.286 -0.587 -0.918 -10.446 -8.927 2.027 57 A_G75:C86_A A 75 ? A 86 ? 19 1 1 A G 76 1_555 A C 85 1_555 0.567 0.013 -0.785 -14.378 -2.003 0.817 58 A_G76:C85_A A 76 ? A 85 ? 19 1 1 A G 77 1_555 A C 84 1_555 -0.174 -0.087 -0.852 -12.390 -4.220 -6.617 59 A_G77:C84_A A 77 ? A 84 ? 19 1 1 A A 110 1_555 A A 168 1_555 3.594 1.234 -1.859 35.842 -8.689 -119.573 60 A_A110:A168_A A 110 ? A 168 ? 5 4 1 A C 148 1_555 A G 115 1_555 1.147 -0.623 0.491 -6.483 -13.399 5.482 61 A_C148:G115_A A 148 ? A 115 ? 19 1 1 A A 149 1_555 A U 114 1_555 0.180 -0.170 -0.453 -7.506 -5.496 3.878 62 A_A149:U114_A A 149 ? A 114 ? 20 1 1 A G 150 1_555 A C 113 1_555 0.027 -0.231 -0.353 -3.845 -7.295 -0.481 63 A_G150:C113_A A 150 ? A 113 ? 19 1 1 A U 151 1_555 A A 112 1_555 0.759 -0.118 -0.478 10.334 -3.631 2.133 64 A_U151:A112_A A 151 ? A 112 ? 20 1 1 A C 152 1_555 A G 111 1_555 0.531 -0.165 -0.699 5.595 -5.293 0.811 65 A_C152:G111_A A 152 ? A 111 ? 19 1 1 A U 154 1_555 A A 165 1_555 -0.265 -0.133 0.233 18.713 -20.084 -8.786 66 A_U154:A165_A A 154 ? A 165 ? 20 1 1 A U 155 1_555 A A 164 1_555 -1.425 0.145 -0.490 21.673 -16.716 -3.537 67 A_U155:A164_A A 155 ? A 164 ? 20 1 1 A C 156 1_555 A G 163 1_555 -0.614 0.137 -0.558 18.510 -11.918 0.075 68 A_C156:G163_A A 156 ? A 163 ? 19 1 1 A C 157 1_555 A G 162 1_555 -0.400 -0.216 -0.343 14.998 -1.210 -6.955 69 A_C157:G162_A A 157 ? A 162 ? 19 1 1 A G 158 1_555 A A 161 1_555 7.614 -4.932 1.080 29.847 7.411 -41.676 70 A_G158:A161_A A 158 ? A 161 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 188 1_555 A G 2 1_555 A U 187 1_555 0.788 -1.471 2.749 -4.524 9.294 27.258 -4.451 -2.310 1.996 18.881 9.191 29.118 1 AA_G1G2:U187C188_AA A 1 ? A 188 ? A 2 ? A 187 ? 1 A G 2 1_555 A U 187 1_555 A U 3 1_555 A A 186 1_555 -0.476 -0.974 3.180 1.494 14.531 38.526 -2.840 0.827 2.641 21.120 -2.172 41.104 2 AA_G2U3:A186U187_AA A 2 ? A 187 ? A 3 ? A 186 ? 1 A U 3 1_555 A A 186 1_555 A U 4 1_555 A A 185 1_555 0.715 -0.821 3.630 -6.084 4.265 37.803 -1.817 -1.900 3.370 6.507 9.281 38.500 3 AA_U3U4:A185A186_AA A 3 ? A 186 ? A 4 ? A 185 ? 1 A U 4 1_555 A A 185 1_555 A G 5 1_555 A C 184 1_555 -0.146 -1.445 2.733 -4.357 7.779 28.036 -4.153 -0.443 2.256 15.567 8.719 29.393 4 AA_U4G5:C184A185_AA A 4 ? A 185 ? A 5 ? A 184 ? 1 A G 5 1_555 A C 184 1_555 A G 6 1_555 A A 183 1_555 -0.770 -0.668 3.113 4.816 -1.102 32.797 -0.996 2.110 2.993 -1.939 -8.470 33.157 5 AA_G5G6:A183C184_AA A 5 ? A 184 ? A 6 ? A 183 ? 1 A G 6 1_555 A A 183 1_555 A U 8 1_555 A A 181 1_555 -0.152 -3.416 6.410 2.032 18.310 66.280 -4.295 0.275 5.413 16.421 -1.822 68.510 6 AA_G6U8:A181A183_AA A 6 ? A 183 ? A 8 ? A 181 ? 1 A U 8 1_555 A A 181 1_555 A U 9 1_555 A A 180 1_555 0.045 -1.163 2.766 2.331 -2.284 32.035 -1.748 0.277 2.836 -4.125 -4.209 32.196 7 AA_U8U9:A180A181_AA A 8 ? A 181 ? A 9 ? A 180 ? 1 A U 9 1_555 A A 180 1_555 A G 10 1_555 A C 179 1_555 -0.077 -1.486 3.675 3.836 11.257 33.902 -4.114 0.704 3.019 18.608 -6.342 35.870 8 AA_U9G10:C179A180_AA A 9 ? A 180 ? A 10 ? A 179 ? 1 A G 10 1_555 A C 179 1_555 A G 11 1_555 A C 178 1_555 -0.429 -1.526 3.084 -2.750 10.338 27.162 -4.986 0.332 2.386 21.008 5.587 29.155 9 AA_G10G11:C178C179_AA A 10 ? A 179 ? A 11 ? A 178 ? 1 A G 11 1_555 A C 178 1_555 A G 12 1_555 A C 177 1_555 0.325 -1.545 3.432 -0.323 12.181 36.285 -3.859 -0.536 2.786 18.914 0.501 38.211 10 AA_G11G12:C177C178_AA A 11 ? A 178 ? A 12 ? A 177 ? 1 A G 15 1_555 A C 39 1_555 A U 16 1_555 A G 38 1_555 0.259 -0.928 2.854 -0.271 5.864 42.033 -1.792 -0.381 2.705 8.128 0.376 42.422 11 AA_G15U16:G38C39_AA A 15 ? A 39 ? A 16 ? A 38 ? 1 A U 16 1_555 A G 38 1_555 A A 17 1_555 A U 37 1_555 -0.146 -1.354 3.258 8.890 17.078 25.707 -5.158 1.671 1.878 33.108 -17.235 32.020 12 AA_U16A17:U37G38_AA A 16 ? A 38 ? A 17 ? A 37 ? 1 A A 17 1_555 A U 37 1_555 A U 18 1_555 A A 36 1_555 -0.374 -1.206 3.578 -5.922 16.067 30.582 -4.491 -0.292 2.663 27.887 10.280 34.949 13 AA_A17U18:A36U37_AA A 17 ? A 37 ? A 18 ? A 36 ? 1 A U 18 1_555 A A 36 1_555 A C 19 1_555 A G 35 1_555 1.321 -1.746 2.924 6.557 10.373 29.874 -4.716 -1.386 2.428 19.137 -12.097 32.243 14 AA_U18C19:G35A36_AA A 18 ? A 36 ? A 19 ? A 35 ? 1 A C 19 1_555 A G 35 1_555 A A 20 1_555 A U 34 1_555 -0.020 -1.302 3.012 -4.399 12.586 33.381 -3.654 -0.506 2.367 20.904 7.306 35.875 15 AA_C19A20:U34G35_AA A 19 ? A 35 ? A 20 ? A 34 ? 1 A A 20 1_555 A U 34 1_555 A U 21 1_555 A A 33 1_555 0.156 -1.404 3.025 1.034 6.430 34.004 -3.239 -0.121 2.725 10.871 -1.747 34.604 16 AA_A20U21:A33U34_AA A 20 ? A 34 ? A 21 ? A 33 ? 1 A U 21 1_555 A A 33 1_555 A G 22 1_555 A C 32 1_555 0.637 -1.590 3.334 4.692 14.187 34.315 -4.250 -0.411 2.564 22.755 -7.526 37.338 17 AA_U21G22:C32A33_AA A 21 ? A 33 ? A 22 ? A 32 ? 1 A G 22 1_555 A C 32 1_555 A G 23 1_555 A C 31 1_555 -0.612 -1.880 3.660 1.615 7.833 31.850 -4.737 1.374 3.089 13.999 -2.887 32.813 18 AA_G22G23:C31C32_AA A 22 ? A 32 ? A 23 ? A 31 ? 1 A G 23 1_555 A C 31 1_555 A C 24 1_555 A A 30 1_555 -0.513 -1.362 3.154 -0.945 9.135 47.374 -2.331 0.560 2.869 11.245 1.163 48.206 19 AA_G23C24:A30C31_AA A 23 ? A 31 ? A 24 ? A 30 ? 1 A C 24 1_555 A A 30 1_555 A G 81 1_555 A C 29 1_555 -5.295 -0.178 3.123 8.016 -2.849 60.440 -0.058 5.548 2.475 -2.815 -7.921 60.979 20 AA_C24G81:C29A30_AA A 24 ? A 30 ? A 81 ? A 29 ? 1 A G 81 1_555 A C 29 1_555 A A 82 1_555 A U 28 1_555 -0.184 -1.340 2.803 -4.894 5.579 32.972 -3.055 -0.339 2.549 9.678 8.489 33.774 21 AA_G81A82:U28C29_AA A 81 ? A 29 ? A 82 ? A 28 ? 1 A A 82 1_555 A U 28 1_555 A U 83 1_555 A A 27 1_555 0.595 -1.068 2.612 5.430 14.202 26.837 -4.069 -0.334 1.904 27.933 -10.679 30.776 22 AA_A82U83:A27U28_AA A 82 ? A 28 ? A 83 ? A 27 ? 1 A A 41 1_555 A A 146 1_555 A U 42 1_555 A G 173 1_555 -3.331 -1.008 5.853 9.040 -150.617 82.622 1.824 1.836 4.531 -80.129 -4.809 158.237 23 AA_A41U42:G173A146_AA A 41 ? A 146 ? A 42 ? A 173 ? 1 A U 42 1_555 A G 173 1_555 A C 43 1_555 A G 172 1_555 -0.992 -2.139 2.955 -0.944 11.571 22.557 -7.412 2.056 1.708 27.374 2.233 25.335 24 AA_U42C43:G172G173_AA A 42 ? A 173 ? A 43 ? A 172 ? 1 A C 43 1_555 A G 172 1_555 A G 44 1_555 A C 171 1_555 0.693 -1.949 3.517 -1.225 9.134 27.845 -5.785 -1.630 2.722 18.355 2.462 29.302 25 AA_C43G44:C171G172_AA A 43 ? A 172 ? A 44 ? A 171 ? 1 A G 44 1_555 A C 171 1_555 A G 45 1_555 A C 170 1_555 -0.311 -1.954 3.357 1.251 10.071 37.358 -4.129 0.615 2.747 15.378 -1.910 38.664 26 AA_G44G45:C170C171_AA A 44 ? A 171 ? A 45 ? A 170 ? 1 A G 45 1_555 A C 170 1_555 A G 46 1_555 A U 144 1_555 2.170 -0.689 2.990 -15.431 3.523 -56.436 0.520 1.410 3.460 -3.646 -15.972 -58.437 27 AA_G45G46:U144C170_AA A 45 ? A 170 ? A 46 ? A 144 ? 1 A G 46 1_555 A U 144 1_555 A U 47 1_555 A A 143 1_555 0.934 -1.049 2.777 -7.373 -5.761 127.353 -0.547 -0.570 2.771 -3.212 4.111 127.542 28 AA_G46U47:A143U144_AA A 46 ? A 144 ? A 47 ? A 143 ? 1 A U 47 1_555 A A 143 1_555 A U 48 1_555 A A 142 1_555 0.351 -1.656 3.466 0.192 2.533 33.880 -3.256 -0.569 3.339 4.338 -0.329 33.972 29 AA_U47U48:A142A143_AA A 47 ? A 143 ? A 48 ? A 142 ? 1 A U 48 1_555 A A 142 1_555 A G 49 1_555 A C 141 1_555 -0.674 -1.611 3.513 0.353 11.141 34.604 -4.145 1.130 2.868 18.155 -0.575 36.303 30 AA_U48G49:C141A142_AA A 48 ? A 142 ? A 49 ? A 141 ? 1 A G 49 1_555 A C 141 1_555 A A 51 1_555 A U 139 1_555 -0.353 -2.328 5.624 -1.308 21.730 61.294 -3.667 0.241 4.659 20.631 1.242 64.689 31 AA_G49A51:U139C141_AA A 49 ? A 141 ? A 51 ? A 139 ? 1 A A 51 1_555 A U 139 1_555 A C 52 1_555 A G 138 1_555 0.086 -1.284 3.220 -1.063 10.862 38.004 -3.095 -0.244 2.762 16.274 1.593 39.484 32 AA_A51C52:G138U139_AA A 51 ? A 139 ? A 52 ? A 138 ? 1 A C 52 1_555 A G 138 1_555 A A 53 1_555 A U 137 1_555 0.466 -1.501 3.237 2.308 10.686 32.177 -4.156 -0.456 2.644 18.620 -4.021 33.937 33 AA_C52A53:U137G138_AA A 52 ? A 138 ? A 53 ? A 137 ? 1 A A 53 1_555 A U 137 1_555 A C 54 1_555 A G 136 1_555 0.110 -1.616 2.830 -1.605 1.630 28.256 -3.620 -0.540 2.724 3.331 3.281 28.347 34 AA_A53C54:G136U137_AA A 53 ? A 137 ? A 54 ? A 136 ? 1 A C 54 1_555 A G 136 1_555 A U 55 1_555 A U 59 1_555 0.040 -1.278 3.534 -6.854 5.674 -44.411 1.101 -0.624 3.629 -7.419 -8.961 -45.249 35 AA_C54U55:U59G136_AA A 54 ? A 136 ? A 55 ? A 59 ? 1 A G 119 1_555 A U 65 1_555 A G 120 1_555 A U 64 1_555 0.334 -1.709 3.092 -4.629 14.045 36.579 -3.953 -0.962 2.255 21.338 7.033 39.360 36 AA_G119G120:U64U65_AA A 119 ? A 65 ? A 120 ? A 64 ? 1 A G 120 1_555 A U 64 1_555 A C 121 1_555 A G 63 1_555 -0.482 -1.422 2.981 -2.216 2.233 39.629 -2.325 0.476 2.922 3.287 3.263 39.748 37 AA_G120C121:G63U64_AA A 120 ? A 64 ? A 121 ? A 63 ? 1 A C 121 1_555 A G 63 1_555 A C 122 1_555 A G 62 1_555 -0.175 -1.683 3.207 1.979 6.099 30.865 -4.157 0.665 2.815 11.306 -3.668 31.508 38 AA_C121C122:G62G63_AA A 121 ? A 63 ? A 122 ? A 62 ? 1 A C 122 1_555 A G 62 1_555 A C 123 1_555 A G 61 1_555 -0.438 -1.820 3.120 0.175 4.861 30.809 -4.229 0.845 2.805 9.079 -0.328 31.182 39 AA_C122C123:G61G62_AA A 122 ? A 62 ? A 123 ? A 61 ? 1 A C 123 1_555 A G 61 1_555 A U 124 1_555 A U 60 1_555 0.205 -1.692 2.940 -8.738 10.385 33.824 -3.898 -1.326 2.223 17.023 14.323 36.372 40 AA_C123U124:U60G61_AA A 123 ? A 61 ? A 124 ? A 60 ? 1 A U 124 1_555 A U 60 1_555 A G 125 1_555 A U 135 1_555 0.913 -3.653 3.550 -12.488 14.489 38.322 -6.272 -2.334 1.752 20.584 17.740 42.670 41 AA_U124G125:U135U60_AA A 124 ? A 60 ? A 125 ? A 135 ? 1 A G 125 1_555 A U 135 1_555 A C 126 1_555 A G 134 1_555 -0.562 -1.405 2.986 -2.782 2.433 42.957 -2.130 0.517 2.935 3.315 3.790 43.108 42 AA_G125C126:G134U135_AA A 125 ? A 135 ? A 126 ? A 134 ? 1 A C 126 1_555 A G 134 1_555 A C 127 1_555 A G 133 1_555 0.029 -1.644 3.410 0.775 10.459 30.725 -4.718 0.080 2.719 19.056 -1.413 32.425 43 AA_C126C127:G133G134_AA A 126 ? A 134 ? A 127 ? A 133 ? 1 A C 127 1_555 A G 133 1_555 A U 128 1_555 A A 132 1_555 -2.414 -0.899 3.258 3.336 15.588 56.904 -1.674 2.617 2.813 16.015 -3.428 58.914 44 AA_C127U128:A132G133_AA A 127 ? A 133 ? A 128 ? A 132 ? 1 A A 92 1_555 A U 73 1_555 A C 94 1_555 A G 72 1_555 0.126 -4.290 -0.243 125.310 -127.304 13.228 -1.239 0.829 3.097 -64.084 -63.080 178.640 45 AA_A92C94:G72U73_AA A 92 ? A 73 ? A 94 ? A 72 ? 1 A C 94 1_555 A G 72 1_555 A C 95 1_555 A G 71 1_555 -0.203 -1.849 3.393 -1.494 6.030 33.154 -4.158 0.110 3.025 10.454 2.589 33.715 46 AA_C94C95:G71G72_AA A 94 ? A 72 ? A 95 ? A 71 ? 1 A C 95 1_555 A G 71 1_555 A G 96 1_555 A C 70 1_555 -0.358 -1.414 3.146 2.124 10.743 29.286 -4.433 1.023 2.455 20.372 -4.028 31.224 47 AA_C95G96:C70G71_AA A 95 ? A 71 ? A 96 ? A 70 ? 1 A G 96 1_555 A C 70 1_555 A U 97 1_555 A A 69 1_555 0.717 -1.319 2.943 -0.795 5.599 34.156 -2.964 -1.312 2.682 9.452 1.343 34.608 48 AA_G96U97:A69C70_AA A 96 ? A 70 ? A 97 ? A 69 ? 1 A U 97 1_555 A A 69 1_555 A C 98 1_555 A G 105 1_555 1.617 -1.323 3.126 2.359 12.904 42.913 -2.811 -1.926 2.719 17.164 -3.138 44.783 49 AA_U97C98:G105A69_AA A 97 ? A 69 ? A 98 ? A 105 ? 1 A C 98 1_555 A G 105 1_555 A C 99 1_555 A G 104 1_555 -0.275 -1.584 3.338 -4.334 -1.782 31.087 -2.578 -0.337 3.427 -3.301 8.028 31.430 50 AA_C98C99:G104G105_AA A 98 ? A 105 ? A 99 ? A 104 ? 1 A C 99 1_555 A G 104 1_555 A A 67 1_555 A C 103 1_555 -3.667 4.897 -4.061 160.580 -18.784 161.355 2.409 1.484 -4.683 -9.406 -80.408 177.044 51 AA_C99A67:C103G104_AA A 99 ? A 104 ? A 67 ? A 103 ? 1 A G 75 1_555 A C 86 1_555 A G 76 1_555 A C 85 1_555 -0.292 -1.370 3.382 -0.899 12.231 35.787 -3.648 0.338 2.788 19.221 1.413 37.765 52 AA_G75G76:C85C86_AA A 75 ? A 86 ? A 76 ? A 85 ? 1 A G 76 1_555 A C 85 1_555 A G 77 1_555 A C 84 1_555 -0.257 -1.690 3.226 0.955 7.789 25.639 -5.482 0.779 2.597 17.050 -2.091 26.794 53 AA_G76G77:C84C85_AA A 76 ? A 85 ? A 77 ? A 84 ? 1 A C 148 1_555 A G 115 1_555 A A 149 1_555 A U 114 1_555 0.251 -1.257 3.232 6.283 4.808 28.249 -3.486 0.813 2.967 9.616 -12.565 29.314 54 AA_C148A149:U114G115_AA A 148 ? A 115 ? A 149 ? A 114 ? 1 A A 149 1_555 A U 114 1_555 A G 150 1_555 A C 113 1_555 -0.558 -1.387 3.099 -1.641 8.021 29.116 -4.120 0.771 2.658 15.570 3.185 30.221 55 AA_A149G150:C113U114_AA A 149 ? A 114 ? A 150 ? A 113 ? 1 A G 150 1_555 A C 113 1_555 A U 151 1_555 A A 112 1_555 0.379 -1.257 2.915 0.837 7.458 33.220 -3.160 -0.533 2.588 12.841 -1.441 34.034 56 AA_G150U151:A112C113_AA A 150 ? A 113 ? A 151 ? A 112 ? 1 A U 151 1_555 A A 112 1_555 A C 152 1_555 A G 111 1_555 0.155 -1.643 3.159 4.386 15.791 31.407 -4.711 0.301 2.120 26.992 -7.497 35.330 57 AA_U151C152:G111A112_AA A 151 ? A 112 ? A 152 ? A 111 ? 1 A C 152 1_555 A G 111 1_555 A U 154 1_555 A A 165 1_555 2.702 -3.782 5.634 -9.478 15.854 85.199 -3.314 -2.302 4.754 11.594 6.931 86.802 58 AA_C152U154:A165G111_AA A 152 ? A 111 ? A 154 ? A 165 ? 1 A U 154 1_555 A A 165 1_555 A U 155 1_555 A A 164 1_555 0.223 -1.501 3.064 0.809 4.842 30.259 -3.701 -0.278 2.800 9.199 -1.537 30.646 59 AA_U154U155:A164A165_AA A 154 ? A 165 ? A 155 ? A 164 ? 1 A U 155 1_555 A A 164 1_555 A C 156 1_555 A G 163 1_555 0.482 -1.126 3.304 -0.234 9.723 37.005 -2.905 -0.765 2.924 15.003 0.361 38.219 60 AA_U155C156:G163A164_AA A 155 ? A 164 ? A 156 ? A 163 ? 1 A C 156 1_555 A G 163 1_555 A C 157 1_555 A G 162 1_555 -0.866 -1.848 3.479 -3.870 15.362 32.737 -5.036 0.870 2.478 25.480 6.420 36.274 61 AA_C156C157:G162G163_AA A 156 ? A 163 ? A 157 ? A 162 ? 1 A C 157 1_555 A G 162 1_555 A G 158 1_555 A A 161 1_555 -3.532 -1.644 3.199 1.191 17.837 58.752 -2.384 3.522 2.585 17.737 -1.184 61.179 62 AA_C157G158:A161G162_AA A 157 ? A 162 ? A 158 ? A 161 ? # _pdbx_audit_support.funding_organization 'French National Research Agency' _pdbx_audit_support.country France _pdbx_audit_support.grant_number ANR-10-BLAN-1502-02 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4P95 _pdbx_initial_refinement_model.details ? #