data_4P97 # _entry.id 4P97 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4P97 pdb_00004p97 10.2210/pdb4p97/pdb WWPDB D_1000200936 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-03-04 2 'Structure model' 1 1 2017-09-20 3 'Structure model' 1 2 2019-12-11 4 'Structure model' 1 3 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Author supporting evidence' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' pdbx_audit_support 3 2 'Structure model' pdbx_entity_src_syn 4 2 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' pdbx_audit_support 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 9 4 'Structure model' pdbx_struct_conn_angle 10 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_CSD' 2 2 'Structure model' '_pdbx_audit_support.funding_organization' 3 2 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 4 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 5 3 'Structure model' '_pdbx_audit_support.funding_organization' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 27 4 'Structure model' '_pdbx_struct_conn_angle.value' 28 4 'Structure model' '_struct_conn.pdbx_dist_value' 29 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 4 'Structure model' '_struct_conn.ptnr1_symmetry' 37 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 44 4 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 4P97 _pdbx_database_status.recvd_initial_deposition_date 2014-04-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.methods_development_category . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boerneke, M.A.' 1 'Dibrov, S.M.' 2 'Hermann, T.H.' 3 # _citation.abstract . _citation.abstract_id_CAS . _citation.book_id_ISBN . _citation.book_publisher ? _citation.book_publisher_city . _citation.book_title . _citation.coordinate_linkage . _citation.country US _citation.database_id_Medline . _citation.details . _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full . _citation.journal_issue . _citation.journal_volume 111 _citation.language . _citation.page_first 15952 _citation.page_last 15957 _citation.title 'Functional conservation despite structural divergence in ligand-responsive RNA switches.' _citation.year 2014 _citation.database_id_CSD . _citation.pdbx_database_id_DOI 10.1073/pnas.1414678111 _citation.pdbx_database_id_PubMed 25349403 _citation.unpublished_flag . # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boerneke, M.A.' 1 ? primary 'Dibrov, S.M.' 2 ? primary 'Gu, J.' 3 ? primary 'Wyles, D.L.' 4 ? primary 'Hermann, T.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*CP*GP*UP*CP*UP*AP*CP*CP*CP*AP*CP*CP*UP*CP*GP*C)-3') ; 4968.999 2 ? ? ? ? 2 polymer syn ;RNA (5'-R(*CP*GP*AP*GP*AP*GP*GP*AP*CP*GP*G)-3') ; 3624.258 2 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 4 water nat water 18.015 111 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CGUCUACCCACCUCGC CGUCUACCCACCUCGC A,C ? 2 polyribonucleotide no no CGAGAGGACGG CGAGAGGACGG B,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 U n 1 4 C n 1 5 U n 1 6 A n 1 7 C n 1 8 C n 1 9 C n 1 10 A n 1 11 C n 1 12 C n 1 13 U n 1 14 C n 1 15 G n 1 16 C n 2 1 C n 2 2 G n 2 3 A n 2 4 G n 2 5 A n 2 6 G n 2 7 G n 2 8 A n 2 9 C n 2 10 G n 2 11 G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 16 'Seneca valley virus' ? 390157 ? 2 1 sample 1 11 'Seneca valley virus' ? 390157 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 2 2 C C A . n A 1 2 G 2 3 3 G G A . n A 1 3 U 3 4 4 U U A . n A 1 4 C 4 5 5 C C A . n A 1 5 U 5 6 6 U U A . n A 1 6 A 6 7 7 A A A . n A 1 7 C 7 8 8 C C A . n A 1 8 C 8 9 9 C C A . n A 1 9 C 9 10 10 C C A . n A 1 10 A 10 11 11 A A A . n A 1 11 C 11 12 12 C C A . n A 1 12 C 12 13 13 C C A . n A 1 13 U 13 14 14 U U A . n A 1 14 C 14 15 15 C C A . n A 1 15 G 15 16 16 G G A . n A 1 16 C 16 17 17 C C A . n B 2 1 C 1 35 35 C C B . n B 2 2 G 2 36 36 G G B . n B 2 3 A 3 37 37 A A B . n B 2 4 G 4 38 38 G G B . n B 2 5 A 5 39 39 A A B . n B 2 6 G 6 40 40 G G B . n B 2 7 G 7 41 41 G G B . n B 2 8 A 8 42 42 A A B . n B 2 9 C 9 43 43 C C B . n B 2 10 G 10 44 44 G G B . n B 2 11 G 11 45 45 G G B . n C 1 1 C 1 2 2 C C C . n C 1 2 G 2 3 3 G G C . n C 1 3 U 3 4 4 U U C . n C 1 4 C 4 5 5 C C C . n C 1 5 U 5 6 6 U U C . n C 1 6 A 6 7 7 A A C . n C 1 7 C 7 8 8 C C C . n C 1 8 C 8 9 9 C C C . n C 1 9 C 9 10 10 C C C . n C 1 10 A 10 11 11 A A C . n C 1 11 C 11 12 12 C C C . n C 1 12 C 12 13 13 C C C . n C 1 13 U 13 14 14 U U C . n C 1 14 C 14 15 15 C C C . n C 1 15 G 15 16 16 G G C . n C 1 16 C 16 17 17 C C C . n D 2 1 C 1 35 35 C C D . n D 2 2 G 2 36 36 G G D . n D 2 3 A 3 37 37 A A D . n D 2 4 G 4 38 38 G G D . n D 2 5 A 5 39 39 A A D . n D 2 6 G 6 40 40 G G D . n D 2 7 G 7 41 41 G G D . n D 2 8 A 8 42 42 A A D . n D 2 9 C 9 43 43 C C D . n D 2 10 G 10 44 44 G G D . n D 2 11 G 11 45 45 G G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA 1 101 1 CA CA A . F 3 CA 1 101 1 CA CA C . G 4 HOH 1 201 91 HOH HOH A . G 4 HOH 2 202 88 HOH HOH A . G 4 HOH 3 203 56 HOH HOH A . G 4 HOH 4 204 12 HOH HOH A . G 4 HOH 5 205 79 HOH HOH A . G 4 HOH 6 206 47 HOH HOH A . G 4 HOH 7 207 28 HOH HOH A . G 4 HOH 8 208 67 HOH HOH A . G 4 HOH 9 209 103 HOH HOH A . G 4 HOH 10 210 6 HOH HOH A . G 4 HOH 11 211 65 HOH HOH A . G 4 HOH 12 212 7 HOH HOH A . G 4 HOH 13 213 61 HOH HOH A . G 4 HOH 14 214 54 HOH HOH A . G 4 HOH 15 215 2 HOH HOH A . G 4 HOH 16 216 15 HOH HOH A . G 4 HOH 17 217 18 HOH HOH A . G 4 HOH 18 218 27 HOH HOH A . G 4 HOH 19 219 31 HOH HOH A . G 4 HOH 20 220 32 HOH HOH A . G 4 HOH 21 221 37 HOH HOH A . G 4 HOH 22 222 38 HOH HOH A . G 4 HOH 23 223 41 HOH HOH A . G 4 HOH 24 224 43 HOH HOH A . G 4 HOH 25 225 48 HOH HOH A . G 4 HOH 26 226 50 HOH HOH A . G 4 HOH 27 227 59 HOH HOH A . G 4 HOH 28 228 60 HOH HOH A . G 4 HOH 29 229 77 HOH HOH A . G 4 HOH 30 230 80 HOH HOH A . G 4 HOH 31 231 83 HOH HOH A . G 4 HOH 32 232 90 HOH HOH A . G 4 HOH 33 233 94 HOH HOH A . G 4 HOH 34 234 97 HOH HOH A . G 4 HOH 35 235 98 HOH HOH A . G 4 HOH 36 236 104 HOH HOH A . G 4 HOH 37 237 105 HOH HOH A . G 4 HOH 38 238 107 HOH HOH A . H 4 HOH 1 101 68 HOH HOH B . H 4 HOH 2 102 69 HOH HOH B . H 4 HOH 3 103 30 HOH HOH B . H 4 HOH 4 104 75 HOH HOH B . H 4 HOH 5 105 17 HOH HOH B . H 4 HOH 6 106 11 HOH HOH B . H 4 HOH 7 107 8 HOH HOH B . H 4 HOH 8 108 73 HOH HOH B . H 4 HOH 9 109 1 HOH HOH B . H 4 HOH 10 110 14 HOH HOH B . H 4 HOH 11 111 25 HOH HOH B . H 4 HOH 12 112 35 HOH HOH B . H 4 HOH 13 113 40 HOH HOH B . H 4 HOH 14 114 62 HOH HOH B . H 4 HOH 15 115 70 HOH HOH B . H 4 HOH 16 116 86 HOH HOH B . H 4 HOH 17 117 92 HOH HOH B . H 4 HOH 18 118 93 HOH HOH B . H 4 HOH 19 119 101 HOH HOH B . H 4 HOH 20 120 102 HOH HOH B . H 4 HOH 21 121 108 HOH HOH B . I 4 HOH 1 201 13 HOH HOH C . I 4 HOH 2 202 95 HOH HOH C . I 4 HOH 3 203 24 HOH HOH C . I 4 HOH 4 204 5 HOH HOH C . I 4 HOH 5 205 3 HOH HOH C . I 4 HOH 6 206 16 HOH HOH C . I 4 HOH 7 207 96 HOH HOH C . I 4 HOH 8 208 57 HOH HOH C . I 4 HOH 9 209 9 HOH HOH C . I 4 HOH 10 210 23 HOH HOH C . I 4 HOH 11 211 26 HOH HOH C . I 4 HOH 12 212 58 HOH HOH C . I 4 HOH 13 213 53 HOH HOH C . I 4 HOH 14 214 4 HOH HOH C . I 4 HOH 15 215 10 HOH HOH C . I 4 HOH 16 216 33 HOH HOH C . I 4 HOH 17 217 34 HOH HOH C . I 4 HOH 18 218 36 HOH HOH C . I 4 HOH 19 219 39 HOH HOH C . I 4 HOH 20 220 42 HOH HOH C . I 4 HOH 21 221 44 HOH HOH C . I 4 HOH 22 222 45 HOH HOH C . I 4 HOH 23 223 49 HOH HOH C . I 4 HOH 24 224 63 HOH HOH C . I 4 HOH 25 225 64 HOH HOH C . I 4 HOH 26 226 72 HOH HOH C . I 4 HOH 27 227 74 HOH HOH C . I 4 HOH 28 228 78 HOH HOH C . I 4 HOH 29 229 85 HOH HOH C . I 4 HOH 30 230 99 HOH HOH C . I 4 HOH 31 231 100 HOH HOH C . I 4 HOH 32 232 106 HOH HOH C . I 4 HOH 33 233 109 HOH HOH C . J 4 HOH 1 101 71 HOH HOH D . J 4 HOH 2 102 46 HOH HOH D . J 4 HOH 3 103 20 HOH HOH D . J 4 HOH 4 104 19 HOH HOH D . J 4 HOH 5 105 76 HOH HOH D . J 4 HOH 6 106 51 HOH HOH D . J 4 HOH 7 107 81 HOH HOH D . J 4 HOH 8 108 21 HOH HOH D . J 4 HOH 9 109 22 HOH HOH D . J 4 HOH 10 110 29 HOH HOH D . J 4 HOH 11 111 52 HOH HOH D . J 4 HOH 12 112 55 HOH HOH D . J 4 HOH 13 113 66 HOH HOH D . J 4 HOH 14 114 82 HOH HOH D . J 4 HOH 15 115 84 HOH HOH D . J 4 HOH 16 116 87 HOH HOH D . J 4 HOH 17 117 89 HOH HOH D . J 4 HOH 18 118 110 HOH HOH D . J 4 HOH 19 119 111 HOH HOH D . # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0103 _software.pdbx_ordinal 1 # _cell.entry_id 4P97 _cell.length_a 60.532 _cell.length_b 60.532 _cell.length_c 122.679 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P97 _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 # _exptl.absorpt_coefficient_mu . _exptl.absorpt_correction_T_max . _exptl.absorpt_correction_T_min . _exptl.absorpt_correction_type . _exptl.absorpt_process_details . _exptl.entry_id 4P97 _exptl.crystals_number . _exptl.details . _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details . # _exptl_crystal.colour . _exptl_crystal.density_diffrn . _exptl_crystal.density_Matthews 2.61 _exptl_crystal.density_method . _exptl_crystal.density_percent_sol 54.34 _exptl_crystal.description . _exptl_crystal.F_000 . _exptl_crystal.id 1 _exptl_crystal.preparation . _exptl_crystal.size_max . _exptl_crystal.size_mid . _exptl_crystal.size_min . _exptl_crystal.size_rad . _exptl_crystal.colour_lustre . _exptl_crystal.colour_modifier . _exptl_crystal.colour_primary . _exptl_crystal.density_meas . _exptl_crystal.density_meas_esd . _exptl_crystal.density_meas_gt . _exptl_crystal.density_meas_lt . _exptl_crystal.density_meas_temp . _exptl_crystal.density_meas_temp_esd . _exptl_crystal.density_meas_temp_gt . _exptl_crystal.density_meas_temp_lt . _exptl_crystal.pdbx_crystal_image_url . _exptl_crystal.pdbx_crystal_image_format . _exptl_crystal.pdbx_mosaicity . _exptl_crystal.pdbx_mosaicity_esd . # _exptl_crystal_grow.apparatus . _exptl_crystal_grow.atmosphere . _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details . _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref . _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure . _exptl_crystal_grow.pressure_esd . _exptl_crystal_grow.seeding . _exptl_crystal_grow.seeding_ref . _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details . _exptl_crystal_grow.temp_esd . _exptl_crystal_grow.time . _exptl_crystal_grow.pdbx_details '24% PEG 4000, 10mM Calcium chloride, 200 mM Ammonium Chloride' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.ambient_environment . _diffrn.ambient_temp 173 _diffrn.ambient_temp_details . _diffrn.ambient_temp_esd . _diffrn.crystal_id 1 _diffrn.crystal_support . _diffrn.crystal_treatment . _diffrn.details . _diffrn.id 1 _diffrn.ambient_pressure . _diffrn.ambient_pressure_esd . _diffrn.ambient_pressure_gt . _diffrn.ambient_pressure_lt . _diffrn.ambient_temp_gt . _diffrn.ambient_temp_lt . # _diffrn_detector.details . _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.area_resol_mean . _diffrn_detector.dtime . _diffrn_detector.pdbx_frames_total . _diffrn_detector.pdbx_collection_time_total . _diffrn_detector.pdbx_collection_date 2014-02-03 # _diffrn_radiation.collimation . _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge . _diffrn_radiation.inhomogeneity . _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm . _diffrn_radiation.polarisn_ratio . _diffrn_radiation.probe . _diffrn_radiation.type . _diffrn_radiation.xray_symbol . _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list . _diffrn_radiation.pdbx_wavelength . _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer . _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current . _diffrn_source.details . _diffrn_source.diffrn_id 1 _diffrn_source.power . _diffrn_source.size . _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target . _diffrn_source.type RIGAKU _diffrn_source.voltage . _diffrn_source.take-off_angle . _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength . _diffrn_source.pdbx_synchrotron_beamline . _diffrn_source.pdbx_synchrotron_site . # _reflns.B_iso_Wilson_estimate 38.0 _reflns.entry_id 4P97 _reflns.data_reduction_details . _reflns.data_reduction_method . _reflns.d_resolution_high 1.86 _reflns.d_resolution_low 19.56 _reflns.details . _reflns.limit_h_max . _reflns.limit_h_min . _reflns.limit_k_max . _reflns.limit_k_min . _reflns.limit_l_max . _reflns.limit_l_min . _reflns.number_all ? _reflns.number_obs 1699 _reflns.observed_criterion . _reflns.observed_criterion_F_max . _reflns.observed_criterion_F_min . _reflns.observed_criterion_I_max . _reflns.observed_criterion_I_min . _reflns.observed_criterion_sigma_F . _reflns.observed_criterion_sigma_I . _reflns.percent_possible_obs 99.12 _reflns.R_free_details . _reflns.Rmerge_F_all . _reflns.Rmerge_F_obs . _reflns.Friedel_coverage . _reflns.number_gt . _reflns.threshold_expression . _reflns.pdbx_redundancy 8.2 _reflns.pdbx_Rmerge_I_obs . _reflns.pdbx_Rmerge_I_all . _reflns.pdbx_Rsym_value . _reflns.pdbx_netI_over_av_sigmaI . _reflns.pdbx_netI_over_sigmaI 10.78 _reflns.pdbx_res_netI_over_av_sigmaI_2 . _reflns.pdbx_res_netI_over_sigmaI_2 . _reflns.pdbx_chi_squared . _reflns.pdbx_scaling_rejects . _reflns.pdbx_d_res_high_opt . _reflns.pdbx_d_res_low_opt . _reflns.pdbx_d_res_opt_method . _reflns.phase_calculation_details . _reflns.pdbx_Rrim_I_all . _reflns.pdbx_Rpim_I_all . _reflns.pdbx_d_opt . _reflns.pdbx_number_measured_all . _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.86 _reflns_shell.d_res_low 1.93 _reflns_shell.meanI_over_sigI_all . _reflns_shell.meanI_over_sigI_obs 3.67 _reflns_shell.number_measured_all . _reflns_shell.number_measured_obs . _reflns_shell.number_possible . _reflns_shell.number_unique_all . _reflns_shell.number_unique_obs . _reflns_shell.percent_possible_all 90.3 _reflns_shell.percent_possible_obs . _reflns_shell.Rmerge_F_all . _reflns_shell.Rmerge_F_obs . _reflns_shell.Rmerge_I_all . _reflns_shell.Rmerge_I_obs . _reflns_shell.meanI_over_sigI_gt . _reflns_shell.meanI_over_uI_all . _reflns_shell.meanI_over_uI_gt . _reflns_shell.number_measured_gt . _reflns_shell.number_unique_gt . _reflns_shell.percent_possible_gt . _reflns_shell.Rmerge_F_gt . _reflns_shell.Rmerge_I_gt . _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.pdbx_Rsym_value . _reflns_shell.pdbx_chi_squared . _reflns_shell.pdbx_netI_over_sigmaI_all . _reflns_shell.pdbx_netI_over_sigmaI_obs . _reflns_shell.pdbx_Rrim_I_all . _reflns_shell.pdbx_Rpim_I_all . _reflns_shell.pdbx_rejects . _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4P97 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13241 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.21 _refine.ls_d_res_high 1.86 _refine.ls_percent_reflns_obs 99.02 _refine.ls_R_factor_obs 0.21163 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21238 _refine.ls_R_factor_R_free 0.19682 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 696 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.973 _refine.B_iso_mean 35.249 _refine.aniso_B[1][1] -0.36 _refine.aniso_B[2][2] -0.36 _refine.aniso_B[3][3] 1.17 _refine.aniso_B[1][2] -0.18 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.124 _refine.pdbx_overall_ESU_R_Free 0.115 _refine.overall_SU_ML 0.000 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.004 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1136 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 1249 _refine_hist.d_res_high 1.86 _refine_hist.d_res_low 48.21 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.861 _refine_ls_shell.d_res_low 1.910 _refine_ls_shell.number_reflns_R_work 877 _refine_ls_shell.R_factor_R_work 0.320 _refine_ls_shell.percent_reflns_obs 89.47 _refine_ls_shell.R_factor_R_free 0.368 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4P97 _struct.title 'Functional conservation despite structural divergence in ligand-responsive RNA switches' _struct.pdbx_model_details . _struct.pdbx_formula_weight . _struct.pdbx_formula_weight_method . _struct.pdbx_model_type_details . _struct.pdbx_CASP_flag . # _struct_keywords.entry_id 4P97 _struct_keywords.text 'Viral genome, internal ribosome entry site, translation, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 4P97 4P97 ? 1 ? 1 2 PDB 4P97 4P97 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4P97 A 1 ? 16 ? 4P97 2 ? 17 ? 2 17 2 2 4P97 B 1 ? 11 ? 4P97 35 ? 45 ? 35 45 3 1 4P97 C 1 ? 16 ? 4P97 2 ? 17 ? 2 17 4 2 4P97 D 1 ? 11 ? 4P97 35 ? 45 ? 35 45 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1300 ? 1 MORE -10 ? 1 'SSA (A^2)' 5170 ? 2 'ABSA (A^2)' 1280 ? 2 MORE -9 ? 2 'SSA (A^2)' 5180 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,G,H 2 1 C,D,F,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A C 8 O2 ? ? ? 1_555 F CA . CA ? ? A C 9 C CA 101 6_454 ? ? ? ? ? ? ? 2.626 ? ? metalc2 metalc ? ? A G 15 "O2'" ? ? ? 1_555 E CA . CA ? ? A G 16 A CA 101 1_555 ? ? ? ? ? ? ? 2.820 ? ? metalc3 metalc ? ? E CA . CA ? ? ? 6_455 C C 9 O2 ? ? A CA 101 C C 10 1_555 ? ? ? ? ? ? ? 2.750 ? ? metalc4 metalc ? ? G HOH . O ? ? ? 8_555 F CA . CA ? ? A HOH 205 C CA 101 1_555 ? ? ? ? ? ? ? 2.432 ? ? metalc5 metalc ? ? G HOH . O ? ? ? 8_555 F CA . CA ? ? A HOH 209 C CA 101 1_555 ? ? ? ? ? ? ? 2.458 ? ? metalc6 metalc ? ? G HOH . O ? ? ? 8_555 F CA . CA ? ? A HOH 210 C CA 101 1_555 ? ? ? ? ? ? ? 2.404 ? ? metalc7 metalc ? ? G HOH . O ? ? ? 7_445 F CA . CA ? ? A HOH 212 C CA 101 1_555 ? ? ? ? ? ? ? 2.548 ? ? metalc8 metalc ? ? C C 16 "O3'" ? ? ? 1_555 F CA . CA ? ? C C 17 C CA 101 1_555 ? ? ? ? ? ? ? 2.612 ? ? metalc9 metalc ? ? C C 16 "O2'" ? ? ? 1_555 F CA . CA ? ? C C 17 C CA 101 1_555 ? ? ? ? ? ? ? 2.541 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 2 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 2 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 2 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 3 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 3 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 3 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 8 N1 ? ? A U 4 B A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 8 N6 ? ? A U 4 B A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 5 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 5 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 5 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 B A 5 N7 ? ? A U 6 B A 39 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 B A 5 N6 ? ? A U 6 B A 39 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog14 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 12 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 12 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 12 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 13 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 13 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 13 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 13 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 14 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 13 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 14 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 15 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 15 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 15 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 16 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 16 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 16 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 1 N3 ? ? ? 1_555 D G 10 N1 ? ? C C 2 D G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C C 1 N4 ? ? ? 1_555 D G 10 O6 ? ? C C 2 D G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C C 1 O2 ? ? ? 1_555 D G 10 N2 ? ? C C 2 D G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 3 D C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 3 D C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 3 D C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C U 3 N3 ? ? ? 1_555 D A 8 N1 ? ? C U 4 D A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C U 3 O4 ? ? ? 1_555 D A 8 N6 ? ? C U 4 D A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C C 4 N3 ? ? ? 1_555 D G 7 N1 ? ? C C 5 D G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C C 4 N4 ? ? ? 1_555 D G 7 O6 ? ? C C 5 D G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C C 4 O2 ? ? ? 1_555 D G 7 N2 ? ? C C 5 D G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C U 5 N3 ? ? ? 1_555 D A 5 N7 ? ? C U 6 D A 39 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog40 hydrog ? ? C U 5 O2 ? ? ? 1_555 D A 5 N6 ? ? C U 6 D A 39 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog41 hydrog ? ? C C 11 N3 ? ? ? 1_555 D G 6 N1 ? ? C C 12 D G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C C 11 N4 ? ? ? 1_555 D G 6 O6 ? ? C C 12 D G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C C 11 O2 ? ? ? 1_555 D G 6 N2 ? ? C C 12 D G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C 12 N3 ? ? ? 1_555 D G 4 N1 ? ? C C 13 D G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 4 O6 ? ? C C 13 D G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 4 N2 ? ? C C 13 D G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C U 13 N3 ? ? ? 1_555 D A 3 N1 ? ? C U 14 D A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C U 13 O4 ? ? ? 1_555 D A 3 N6 ? ? C U 14 D A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C C 14 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 15 D G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C C 14 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 15 D G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C C 14 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 15 D G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C G 15 N1 ? ? ? 1_555 D C 1 N3 ? ? C G 16 D C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C G 15 N2 ? ? ? 1_555 D C 1 O2 ? ? C G 16 D C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C G 15 O6 ? ? ? 1_555 D C 1 N4 ? ? C G 16 D C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? A C 8 ? A C 9 ? 1_555 CA ? F CA . ? C CA 101 ? 6_454 O ? G HOH . ? A HOH 205 ? 8_555 98.1 ? 2 O2 ? A C 8 ? A C 9 ? 1_555 CA ? F CA . ? C CA 101 ? 6_454 O ? G HOH . ? A HOH 209 ? 8_555 99.0 ? 3 O ? G HOH . ? A HOH 205 ? 8_555 CA ? F CA . ? C CA 101 ? 6_454 O ? G HOH . ? A HOH 209 ? 8_555 1.6 ? 4 O2 ? A C 8 ? A C 9 ? 1_555 CA ? F CA . ? C CA 101 ? 6_454 O ? G HOH . ? A HOH 210 ? 8_555 96.2 ? 5 O ? G HOH . ? A HOH 205 ? 8_555 CA ? F CA . ? C CA 101 ? 6_454 O ? G HOH . ? A HOH 210 ? 8_555 2.0 ? 6 O ? G HOH . ? A HOH 209 ? 8_555 CA ? F CA . ? C CA 101 ? 6_454 O ? G HOH . ? A HOH 210 ? 8_555 3.1 ? 7 O2 ? A C 8 ? A C 9 ? 1_555 CA ? F CA . ? C CA 101 ? 6_454 O ? G HOH . ? A HOH 212 ? 7_445 97.4 ? 8 O ? G HOH . ? A HOH 205 ? 8_555 CA ? F CA . ? C CA 101 ? 6_454 O ? G HOH . ? A HOH 212 ? 7_445 2.1 ? 9 O ? G HOH . ? A HOH 209 ? 8_555 CA ? F CA . ? C CA 101 ? 6_454 O ? G HOH . ? A HOH 212 ? 7_445 1.7 ? 10 O ? G HOH . ? A HOH 210 ? 8_555 CA ? F CA . ? C CA 101 ? 6_454 O ? G HOH . ? A HOH 212 ? 7_445 2.1 ? 11 O2 ? A C 8 ? A C 9 ? 1_555 CA ? F CA . ? C CA 101 ? 6_454 "O3'" ? C C 16 ? C C 17 ? 1_555 96.4 ? 12 O ? G HOH . ? A HOH 205 ? 8_555 CA ? F CA . ? C CA 101 ? 6_454 "O3'" ? C C 16 ? C C 17 ? 1_555 2.7 ? 13 O ? G HOH . ? A HOH 209 ? 8_555 CA ? F CA . ? C CA 101 ? 6_454 "O3'" ? C C 16 ? C C 17 ? 1_555 2.7 ? 14 O ? G HOH . ? A HOH 210 ? 8_555 CA ? F CA . ? C CA 101 ? 6_454 "O3'" ? C C 16 ? C C 17 ? 1_555 1.9 ? 15 O ? G HOH . ? A HOH 212 ? 7_445 CA ? F CA . ? C CA 101 ? 6_454 "O3'" ? C C 16 ? C C 17 ? 1_555 1.0 ? 16 O2 ? A C 8 ? A C 9 ? 1_555 CA ? F CA . ? C CA 101 ? 6_454 "O2'" ? C C 16 ? C C 17 ? 1_555 96.9 ? 17 O ? G HOH . ? A HOH 205 ? 8_555 CA ? F CA . ? C CA 101 ? 6_454 "O2'" ? C C 16 ? C C 17 ? 1_555 1.3 ? 18 O ? G HOH . ? A HOH 209 ? 8_555 CA ? F CA . ? C CA 101 ? 6_454 "O2'" ? C C 16 ? C C 17 ? 1_555 2.2 ? 19 O ? G HOH . ? A HOH 210 ? 8_555 CA ? F CA . ? C CA 101 ? 6_454 "O2'" ? C C 16 ? C C 17 ? 1_555 0.8 ? 20 O ? G HOH . ? A HOH 212 ? 7_445 CA ? F CA . ? C CA 101 ? 6_454 "O2'" ? C C 16 ? C C 17 ? 1_555 1.5 ? 21 "O3'" ? C C 16 ? C C 17 ? 1_555 CA ? F CA . ? C CA 101 ? 6_454 "O2'" ? C C 16 ? C C 17 ? 1_555 1.7 ? 22 "O2'" ? A G 15 ? A G 16 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O2 ? C C 9 ? C C 10 ? 1_555 100.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 101 ? 3 'binding site for residue CA A 101' AC2 Software C CA 101 ? 6 'binding site for residue CA C 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 G A 15 ? G A 16 . ? 1_555 ? 2 AC1 3 C C 9 ? C C 10 . ? 8_554 ? 3 AC1 3 A C 10 ? A C 11 . ? 8_554 ? 4 AC2 6 C A 8 ? C A 9 . ? 8_555 ? 5 AC2 6 HOH G . ? HOH A 205 . ? 8_555 ? 6 AC2 6 HOH G . ? HOH A 209 . ? 8_555 ? 7 AC2 6 HOH G . ? HOH A 210 . ? 8_555 ? 8 AC2 6 HOH G . ? HOH A 212 . ? 7_445 ? 9 AC2 6 C C 16 ? C C 17 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 120 ? ? O B HOH 121 ? ? 1.84 2 1 OP1 D G 40 ? ? O D HOH 117 ? ? 2.00 3 1 O A HOH 228 ? ? O B HOH 118 ? ? 2.09 4 1 O B HOH 117 ? ? O B HOH 118 ? ? 2.10 5 1 O B HOH 110 ? ? O B HOH 121 ? ? 2.15 6 1 O C HOH 232 ? ? O D HOH 119 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A U 6 ? ? C4 A U 6 ? ? O4 A U 6 ? ? 114.72 119.40 -4.68 0.70 N 2 1 N1 A C 9 ? ? C2 A C 9 ? ? O2 A C 9 ? ? 114.06 118.90 -4.84 0.60 N 3 1 C2 B G 36 ? ? N3 B G 36 ? ? C4 B G 36 ? ? 114.96 111.90 3.06 0.50 N 4 1 C8 D A 37 ? ? N9 D A 37 ? ? C4 D A 37 ? ? 109.38 105.80 3.58 0.40 N 5 1 N9 D G 45 ? ? C4 D G 45 ? ? C5 D G 45 ? ? 107.85 105.40 2.45 0.40 N 6 1 C8 D G 45 ? ? N9 D G 45 ? ? "C1'" D G 45 ? ? 135.43 127.00 8.43 1.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CA CA CA N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 HOH O O N N 112 HOH H1 H N N 113 HOH H2 H N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4P97 'double helix' 4P97 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 10 1_555 0.040 -0.273 0.067 7.535 -16.545 -1.775 1 A_C2:G44_B A 2 ? B 44 ? 19 1 1 A G 2 1_555 B C 9 1_555 -0.187 -0.162 0.001 -7.499 -17.797 0.791 2 A_G3:C43_B A 3 ? B 43 ? 19 1 1 A U 3 1_555 B A 8 1_555 0.273 -0.063 0.308 -5.676 -9.902 0.330 3 A_U4:A42_B A 4 ? B 42 ? 20 1 1 A C 4 1_555 B G 7 1_555 0.425 -0.157 0.131 -1.032 -6.397 -0.179 4 A_C5:G41_B A 5 ? B 41 ? 19 1 1 A U 5 1_555 B A 5 1_555 4.247 -2.414 -0.305 -3.903 -8.153 -90.233 5 A_U6:A39_B A 6 ? B 39 ? 24 4 1 A C 11 1_555 B G 6 1_555 0.381 -0.056 -0.415 24.890 -15.253 2.252 6 A_C12:G40_B A 12 ? B 40 ? 19 1 1 A C 12 1_555 B G 4 1_555 0.138 -0.139 0.125 11.697 -27.192 -1.505 7 A_C13:G38_B A 13 ? B 38 ? 19 1 1 A U 13 1_555 B A 3 1_555 0.000 -0.157 0.256 7.995 -14.417 -0.347 8 A_U14:A37_B A 14 ? B 37 ? 20 1 1 A C 14 1_555 B G 2 1_555 0.199 -0.192 0.072 8.037 -16.694 0.117 9 A_C15:G36_B A 15 ? B 36 ? 19 1 1 A G 15 1_555 B C 1 1_555 -0.266 -0.224 0.094 1.384 -13.977 -1.670 10 A_G16:C35_B A 16 ? B 35 ? 19 1 1 C C 1 1_555 D G 10 1_555 0.284 -0.225 0.003 11.025 -17.025 -1.562 11 C_C2:G44_D C 2 ? D 44 ? 19 1 1 C G 2 1_555 D C 9 1_555 -0.410 -0.224 0.102 -6.727 -20.934 -0.178 12 C_G3:C43_D C 3 ? D 43 ? 19 1 1 C U 3 1_555 D A 8 1_555 0.034 -0.114 0.318 -4.316 -14.608 5.369 13 C_U4:A42_D C 4 ? D 42 ? 20 1 1 C C 4 1_555 D G 7 1_555 0.177 -0.081 0.328 -4.893 -8.596 0.672 14 C_C5:G41_D C 5 ? D 41 ? 19 1 1 C U 5 1_555 D A 5 1_555 4.166 -2.167 -0.299 -7.635 -5.226 -93.418 15 C_U6:A39_D C 6 ? D 39 ? 24 4 1 C C 11 1_555 D G 6 1_555 0.240 -0.048 -0.498 27.742 -14.626 1.259 16 C_C12:G40_D C 12 ? D 40 ? 19 1 1 C C 12 1_555 D G 4 1_555 0.211 -0.104 0.113 10.753 -24.077 0.029 17 C_C13:G38_D C 13 ? D 38 ? 19 1 1 C U 13 1_555 D A 3 1_555 -0.193 -0.212 0.282 4.167 -12.953 1.095 18 C_U14:A37_D C 14 ? D 37 ? 20 1 1 C C 14 1_555 D G 2 1_555 0.128 -0.331 -0.048 7.534 -15.056 -2.073 19 C_C15:G36_D C 15 ? D 36 ? 19 1 1 C G 15 1_555 D C 1 1_555 -0.278 -0.204 0.245 3.000 -12.543 -2.639 20 C_G16:C35_D C 16 ? D 35 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 10 1_555 A G 2 1_555 B C 9 1_555 0.496 -1.855 3.470 -0.665 14.466 32.652 -5.020 -0.901 2.446 24.296 1.116 35.639 1 AA_C2G3:C43G44_BB A 2 ? B 44 ? A 3 ? B 43 ? 1 A G 2 1_555 B C 9 1_555 A U 3 1_555 B A 8 1_555 -0.381 -1.581 3.219 -3.599 1.304 34.993 -2.805 0.104 3.182 2.161 5.962 35.196 2 AA_G3U4:A42C43_BB A 3 ? B 43 ? A 4 ? B 42 ? 1 A U 3 1_555 B A 8 1_555 A C 4 1_555 B G 7 1_555 0.560 -2.016 3.099 4.173 0.579 28.082 -4.238 -0.226 3.106 1.186 -8.538 28.390 3 AA_U4C5:G41A42_BB A 4 ? B 42 ? A 5 ? B 41 ? 1 A C 4 1_555 B G 7 1_555 A U 5 1_555 B A 5 1_555 -2.872 -1.782 3.329 3.268 1.741 77.484 -1.472 2.385 3.191 1.391 -2.609 77.559 4 AA_C5U6:A39G41_BB A 5 ? B 41 ? A 6 ? B 39 ? 1 A C 11 1_555 B G 6 1_555 A C 12 1_555 B G 4 1_555 1.596 -1.458 3.325 0.295 11.017 50.982 -2.376 -1.798 2.980 12.630 -0.338 52.081 5 AA_C12C13:G38G40_BB A 12 ? B 40 ? A 13 ? B 38 ? 1 A C 12 1_555 B G 4 1_555 A U 13 1_555 B A 3 1_555 -0.088 -1.334 3.296 -5.009 9.926 35.097 -3.410 -0.514 2.815 15.972 8.059 36.763 6 AA_C13U14:A37G38_BB A 13 ? B 38 ? A 14 ? B 37 ? 1 A U 13 1_555 B A 3 1_555 A C 14 1_555 B G 2 1_555 0.065 -1.480 3.187 0.235 3.372 32.973 -3.135 -0.076 3.025 5.922 -0.413 33.141 7 AA_U14C15:G36A37_BB A 14 ? B 37 ? A 15 ? B 36 ? 1 A C 14 1_555 B G 2 1_555 A G 15 1_555 B C 1 1_555 -0.643 -2.272 3.204 -3.619 14.303 26.418 -6.757 0.628 1.830 28.633 7.245 30.194 8 AA_C15G16:C35G36_BB A 15 ? B 36 ? A 16 ? B 35 ? 1 C C 1 1_555 D G 10 1_555 C G 2 1_555 D C 9 1_555 0.098 -1.763 3.519 -2.266 14.345 32.512 -4.920 -0.481 2.530 24.175 3.818 35.528 9 CC_C2G3:C43G44_DD C 2 ? D 44 ? C 3 ? D 43 ? 1 C G 2 1_555 D C 9 1_555 C U 3 1_555 D A 8 1_555 0.047 -1.254 3.183 -1.660 0.884 33.302 -2.326 -0.348 3.144 1.542 2.893 33.354 10 CC_G3U4:A42C43_DD C 3 ? D 43 ? C 4 ? D 42 ? 1 C U 3 1_555 D A 8 1_555 C C 4 1_555 D G 7 1_555 0.190 -1.747 3.200 2.221 4.721 32.981 -3.780 0.017 2.935 8.251 -3.882 33.380 11 CC_U4C5:G41A42_DD C 4 ? D 42 ? C 5 ? D 41 ? 1 C C 4 1_555 D G 7 1_555 C U 5 1_555 D A 5 1_555 -2.748 -2.116 3.240 6.225 0.411 73.058 -1.785 2.494 3.020 0.344 -5.219 73.286 12 CC_C5U6:A39G41_DD C 5 ? D 41 ? C 6 ? D 39 ? 1 C C 11 1_555 D G 6 1_555 C C 12 1_555 D G 4 1_555 1.543 -1.565 3.400 -1.398 12.353 52.509 -2.483 -1.789 2.950 13.744 1.556 53.859 13 CC_C12C13:G38G40_DD C 12 ? D 40 ? C 13 ? D 38 ? 1 C C 12 1_555 D G 4 1_555 C U 13 1_555 D A 3 1_555 -0.136 -1.384 3.426 -5.001 8.854 32.666 -3.753 -0.558 2.950 15.287 8.635 34.171 14 CC_C13U14:A37G38_DD C 13 ? D 38 ? C 14 ? D 37 ? 1 C U 13 1_555 D A 3 1_555 C C 14 1_555 D G 2 1_555 -0.026 -1.430 3.079 1.081 2.996 34.754 -2.803 0.194 2.947 5.003 -1.805 34.895 15 CC_U14C15:G36A37_DD C 14 ? D 37 ? C 15 ? D 36 ? 1 C C 14 1_555 D G 2 1_555 C G 15 1_555 D C 1 1_555 -0.486 -2.297 3.196 -5.076 12.794 25.560 -6.943 0.037 1.912 26.600 10.553 28.976 16 CC_C15G16:C35G36_DD C 15 ? D 36 ? C 16 ? D 35 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01AI072012 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 4P97 _atom_sites.fract_transf_matrix[1][1] 0.016520 _atom_sites.fract_transf_matrix[1][2] 0.009538 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019076 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008151 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P # loop_