HEADER SOLUTE-BINDING PROTEIN 08-APR-14 4PAF TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND 3,4- TITLE 3 DIHYDROXYBENZOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER, DCTP SUBUNIT, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUEGERIA POMEROYI; SOURCE 3 ORGANISM_TAXID: 246200; SOURCE 4 STRAIN: DSS-3; SOURCE 5 GENE: SPO1773; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 5 27-DEC-23 4PAF 1 REMARK REVDAT 4 25-DEC-19 4PAF 1 REMARK REVDAT 3 27-SEP-17 4PAF 1 SOURCE JRNL REMARK REVDAT 2 25-FEB-15 4PAF 1 JRNL REVDAT 1 07-MAY-14 4PAF 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 72592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2602 - 4.7387 0.92 2575 144 0.1490 0.1391 REMARK 3 2 4.7387 - 3.7617 0.92 2554 139 0.1093 0.1353 REMARK 3 3 3.7617 - 3.2863 0.92 2561 141 0.1266 0.1477 REMARK 3 4 3.2863 - 2.9859 0.99 2765 126 0.1386 0.1763 REMARK 3 5 2.9859 - 2.7719 1.00 2801 161 0.1346 0.1367 REMARK 3 6 2.7719 - 2.6085 0.71 1973 97 0.1304 0.1516 REMARK 3 7 2.6085 - 2.4779 1.00 2809 144 0.1228 0.1632 REMARK 3 8 2.4779 - 2.3700 1.00 2793 146 0.1223 0.1225 REMARK 3 9 2.3700 - 2.2788 1.00 2775 145 0.1275 0.1539 REMARK 3 10 2.2788 - 2.2001 0.70 1959 109 0.1246 0.1760 REMARK 3 11 2.2001 - 2.1313 1.00 2782 134 0.1206 0.1519 REMARK 3 12 2.1313 - 2.0704 0.93 2501 113 0.1310 0.1929 REMARK 3 13 2.0704 - 2.0159 0.97 1901 101 0.1433 0.1681 REMARK 3 14 2.0159 - 1.9667 1.00 2811 131 0.1430 0.1546 REMARK 3 15 1.9667 - 1.9220 1.00 2831 131 0.1437 0.2221 REMARK 3 16 1.9220 - 1.8811 1.00 2758 179 0.1637 0.1986 REMARK 3 17 1.8811 - 1.8435 1.00 2794 110 0.1664 0.2031 REMARK 3 18 1.8435 - 1.8087 1.00 2822 144 0.1617 0.1889 REMARK 3 19 1.8087 - 1.7764 1.00 2783 155 0.1731 0.2058 REMARK 3 20 1.7764 - 1.7463 1.00 2764 154 0.1721 0.2181 REMARK 3 21 1.7463 - 1.7181 1.00 2778 144 0.1873 0.2042 REMARK 3 22 1.7181 - 1.6917 1.00 2773 154 0.1934 0.2283 REMARK 3 23 1.6917 - 1.6668 1.00 2777 127 0.1951 0.1911 REMARK 3 24 1.6668 - 1.6433 1.00 2744 179 0.2044 0.2232 REMARK 3 25 1.6433 - 1.6211 1.00 2809 160 0.2134 0.2266 REMARK 3 26 1.6211 - 1.6000 1.00 2779 152 0.2187 0.2312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2427 REMARK 3 ANGLE : 1.358 3302 REMARK 3 CHIRALITY : 0.082 371 REMARK 3 PLANARITY : 0.008 434 REMARK 3 DIHEDRAL : 14.106 880 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9563 32.6328 -1.3945 REMARK 3 T TENSOR REMARK 3 T11: 0.0964 T22: 0.0618 REMARK 3 T33: 0.0535 T12: 0.0024 REMARK 3 T13: 0.0138 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.9319 L22: 2.3163 REMARK 3 L33: 0.4940 L12: -0.3052 REMARK 3 L13: 0.0647 L23: 0.2475 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: 0.1361 S13: -0.0557 REMARK 3 S21: -0.0835 S22: -0.0094 S23: -0.0136 REMARK 3 S31: 0.1785 S32: -0.0247 S33: 0.0341 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5205 37.9434 9.4221 REMARK 3 T TENSOR REMARK 3 T11: 0.0487 T22: 0.0465 REMARK 3 T33: 0.0523 T12: 0.0021 REMARK 3 T13: 0.0128 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.2109 L22: 0.4896 REMARK 3 L33: 0.4335 L12: 0.1793 REMARK 3 L13: 0.0200 L23: -0.1451 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: 0.0030 S13: -0.0261 REMARK 3 S21: -0.0627 S22: 0.0101 S23: -0.0336 REMARK 3 S31: 0.0186 S32: -0.0161 S33: 0.0225 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9554 37.9252 17.0796 REMARK 3 T TENSOR REMARK 3 T11: 0.0569 T22: 0.0787 REMARK 3 T33: 0.0584 T12: 0.0016 REMARK 3 T13: -0.0026 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.8506 L22: 1.2663 REMARK 3 L33: 0.3242 L12: 1.2623 REMARK 3 L13: -0.5003 L23: -0.5509 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.0438 S13: -0.1050 REMARK 3 S21: 0.0199 S22: -0.0162 S23: -0.1026 REMARK 3 S31: 0.0467 S32: 0.0266 S33: 0.0137 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3655 55.8465 8.9175 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: 0.0528 REMARK 3 T33: 0.0481 T12: 0.0049 REMARK 3 T13: 0.0053 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.4761 L22: 1.4688 REMARK 3 L33: 0.4329 L12: 0.2284 REMARK 3 L13: -0.1471 L23: -0.1064 REMARK 3 S TENSOR REMARK 3 S11: 0.0567 S12: 0.0036 S13: 0.0785 REMARK 3 S21: 0.0010 S22: -0.0632 S23: -0.0053 REMARK 3 S31: -0.0894 S32: 0.0158 S33: 0.0024 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6714 57.5046 8.7039 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: 0.0625 REMARK 3 T33: 0.0975 T12: -0.0021 REMARK 3 T13: -0.0019 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.3757 L22: 0.4577 REMARK 3 L33: 1.3326 L12: 0.2164 REMARK 3 L13: 0.0691 L23: 0.3674 REMARK 3 S TENSOR REMARK 3 S11: -0.0514 S12: 0.0704 S13: 0.0325 REMARK 3 S21: -0.0458 S22: 0.0367 S23: 0.1286 REMARK 3 S31: -0.0905 S32: -0.0612 S33: -0.0013 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3108 49.0152 4.6235 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.0671 REMARK 3 T33: 0.0610 T12: 0.0107 REMARK 3 T13: 0.0020 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.3517 L22: 0.7182 REMARK 3 L33: 0.4257 L12: 0.1870 REMARK 3 L13: -0.0790 L23: 0.0469 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.0546 S13: 0.0418 REMARK 3 S21: -0.0463 S22: -0.0056 S23: 0.0578 REMARK 3 S31: -0.0391 S32: -0.0169 S33: -0.0047 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3155 37.9761 2.4061 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.0743 REMARK 3 T33: 0.0839 T12: 0.0124 REMARK 3 T13: 0.0245 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.5273 L22: 2.6587 REMARK 3 L33: 0.5426 L12: 0.6180 REMARK 3 L13: -0.2957 L23: -0.8570 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: 0.0147 S13: -0.1019 REMARK 3 S21: -0.1828 S22: -0.0324 S23: -0.3133 REMARK 3 S31: 0.1207 S32: 0.0224 S33: 0.0732 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8458 61.3424 12.8694 REMARK 3 T TENSOR REMARK 3 T11: 0.0991 T22: 0.0753 REMARK 3 T33: 0.0805 T12: -0.0026 REMARK 3 T13: 0.0054 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.1839 L22: 0.2713 REMARK 3 L33: 1.7159 L12: 0.0365 REMARK 3 L13: -0.1915 L23: -0.4836 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: -0.0090 S13: 0.0549 REMARK 3 S21: 0.0552 S22: -0.0457 S23: -0.0725 REMARK 3 S31: -0.1641 S32: 0.1432 S33: 0.0193 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4047 46.7615 20.2141 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.1300 REMARK 3 T33: 0.0865 T12: -0.0159 REMARK 3 T13: -0.0216 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.9665 L22: 0.5135 REMARK 3 L33: 1.2632 L12: 0.0495 REMARK 3 L13: -0.2108 L23: -0.0409 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: -0.1664 S13: 0.0244 REMARK 3 S21: 0.0740 S22: -0.0060 S23: -0.0780 REMARK 3 S31: -0.1510 S32: 0.3299 S33: -0.0426 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38418 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 62.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.70500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (67.94 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 10 MM 3,4-DIHYDROXYBENZOATE); RESERVOIR (0.1 M REMARK 280 BIS-TRIS PROPANE PH 7, 60 %(V/V) TACSIMATE); CRYOPROTECTION (80% REMARK 280 RESERVOIR + 20% DIETHYLENE GLYCOL), PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.29450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.85300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.49150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.85300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.29450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.49150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ILE A 3 REMARK 465 SER A 4 REMARK 465 PHE A 5 REMARK 465 LYS A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 ARG A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 CYS A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 GLN A 334 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 39 H TRP A 41 1.35 REMARK 500 HE22 GLN A 135 O HOH A 501 1.56 REMARK 500 O HOH A 591 O HOH A 765 1.98 REMARK 500 O HOH A 787 O HOH A 798 2.01 REMARK 500 O HOH A 605 O HOH A 779 2.04 REMARK 500 OD1 ASP A 311 O HOH A 730 2.07 REMARK 500 O HOH A 587 O HOH A 620 2.09 REMARK 500 OD1 ASP A 325 O HOH A 775 2.10 REMARK 500 O CYS A 220 O HOH A 762 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 561 O HOH A 587 2565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 147 -157.32 -108.12 REMARK 500 ALA A 187 74.50 -118.35 REMARK 500 LEU A 331 35.49 -97.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 797 DISTANCE = 6.51 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DHB A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510260 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4PAI RELATED DB: PDB REMARK 900 RELATED ID: 4PBH RELATED DB: PDB DBREF 4PAF A 1 327 UNP Q5LSJ5 Q5LSJ5_RUEPO 1 327 SEQADV 4PAF SER A 37 UNP Q5LSJ5 PRO 37 ENGINEERED MUTATION SEQADV 4PAF CYS A 220 UNP Q5LSJ5 TYR 220 ENGINEERED MUTATION SEQADV 4PAF ALA A 328 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PAF GLU A 329 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PAF ASN A 330 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PAF LEU A 331 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PAF TYR A 332 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PAF PHE A 333 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PAF GLN A 334 UNP Q5LSJ5 EXPRESSION TAG SEQRES 1 A 334 MSE THR ILE SER PHE LYS GLY LEU ALA ARG GLY VAL ALA SEQRES 2 A 334 CYS ALA ALA LEU VAL LEU ALA ALA LEU PRO ALA ALA ALA SEQRES 3 A 334 LYS GLU PHE ARG LEU GLY LEU ILE THR PRO SER PRO HIS SEQRES 4 A 334 THR TRP THR LYS ALA ALA GLU ALA PHE GLY ALA GLU LEU SEQRES 5 A 334 SER GLU LYS SER GLY GLY ALA HIS SER VAL SER VAL PHE SEQRES 6 A 334 PRO ALA ARG GLN LEU GLY ASN GLU ALA GLN MSE LEU GLN SEQRES 7 A 334 GLN LEU GLN THR GLY ALA LEU ASP MSE ALA PHE MSE THR SEQRES 8 A 334 VAL ALA GLU VAL SER ASN ARG VAL PRO ASN MSE GLY ALA SEQRES 9 A 334 PHE TYR ALA PRO TYR LEU ALA GLY ASP ILE ASN HIS ALA SEQRES 10 A 334 ALA ALA ILE LEU ARG SER ASP THR ALA ARG GLY MSE LEU SEQRES 11 A 334 ALA VAL LEU PRO GLN GLU ALA GLY VAL VAL GLY VAL GLY SEQRES 12 A 334 PHE GLY SER ALA GLY MSE ARG GLN ILE LEU SER ARG GLY SEQRES 13 A 334 ALA VAL ASN SER ALA ALA ASP LEU SER GLY LEU LYS LEU SEQRES 14 A 334 ARG ILE THR PRO PHE ASP PRO ILE LEU ASP PHE TYR ASN SEQRES 15 A 334 ALA LEU GLY ALA ALA PRO THR PRO MSE PRO LEU PRO ALA SEQRES 16 A 334 VAL TYR ASP ALA LEU ALA ASN GLY GLN VAL ASP ALA ILE SEQRES 17 A 334 ASP MSE ASP VAL GLU LEU ILE ASN VAL LEU LYS CYS HIS SEQRES 18 A 334 GLU HIS ALA ASP THR ILE LEU ILE SER ASN HIS MSE MSE SEQRES 19 A 334 PHE PRO MSE VAL GLY LEU ILE SER ALA ARG VAL TYR ALA SEQRES 20 A 334 GLY MSE SER ASP ALA ASP LYS ALA MSE ILE SER GLU LEU SEQRES 21 A 334 MSE ALA LYS HIS VAL ASP SER THR LEU ASP VAL TYR MSE SEQRES 22 A 334 VAL LYS GLU PRO GLU TRP THR ASP ALA LEU THR LYS VAL SEQRES 23 A 334 GLY LYS THR PHE LYS ARG VAL ASP GLN SER PHE PHE GLY SEQRES 24 A 334 ASP ALA ILE ALA GLN TRP GLU THR ILE TRP ALA ASP LYS SEQRES 25 A 334 ALA PRO SER LEU PRO GLU LEU ARG LYS THR ALA ALA ASP SEQRES 26 A 334 LEU GLN ALA GLU ASN LEU TYR PHE GLN MODRES 4PAF MSE A 76 MET MODIFIED RESIDUE MODRES 4PAF MSE A 87 MET MODIFIED RESIDUE MODRES 4PAF MSE A 90 MET MODIFIED RESIDUE MODRES 4PAF MSE A 102 MET MODIFIED RESIDUE MODRES 4PAF MSE A 129 MET MODIFIED RESIDUE MODRES 4PAF MSE A 149 MET MODIFIED RESIDUE MODRES 4PAF MSE A 191 MET MODIFIED RESIDUE MODRES 4PAF MSE A 210 MET MODIFIED RESIDUE MODRES 4PAF MSE A 233 MET MODIFIED RESIDUE MODRES 4PAF MSE A 234 MET MODIFIED RESIDUE MODRES 4PAF MSE A 237 MET MODIFIED RESIDUE MODRES 4PAF MSE A 249 MET MODIFIED RESIDUE MODRES 4PAF MSE A 256 MET MODIFIED RESIDUE MODRES 4PAF MSE A 261 MET MODIFIED RESIDUE MODRES 4PAF MSE A 273 MET MODIFIED RESIDUE HET MSE A 76 17 HET MSE A 87 17 HET MSE A 90 17 HET MSE A 102 17 HET MSE A 129 17 HET MSE A 149 17 HET MSE A 191 17 HET MSE A 210 34 HET MSE A 233 17 HET MSE A 234 17 HET MSE A 237 17 HET MSE A 249 17 HET MSE A 256 17 HET MSE A 261 17 HET MSE A 273 17 HET DHB A 401 16 HET MLI A 402 9 HETNAM MSE SELENOMETHIONINE HETNAM DHB 3,4-DIHYDROXYBENZOIC ACID HETNAM MLI MALONATE ION FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 2 DHB C7 H6 O4 FORMUL 3 MLI C3 H2 O4 2- FORMUL 4 HOH *339(H2 O) HELIX 1 AA1 HIS A 39 SER A 56 1 18 HELIX 2 AA2 ASN A 72 GLY A 83 1 12 HELIX 3 AA3 VAL A 92 VAL A 99 1 8 HELIX 4 AA4 PRO A 100 ALA A 107 5 8 HELIX 5 AA5 ASP A 113 ARG A 122 1 10 HELIX 6 AA6 SER A 123 MSE A 129 1 7 HELIX 7 AA7 VAL A 132 GLY A 138 1 7 HELIX 8 AA8 SER A 160 SER A 165 5 6 HELIX 9 AA9 PHE A 174 GLY A 185 1 12 HELIX 10 AB1 PRO A 192 PRO A 194 5 3 HELIX 11 AB2 ALA A 195 ASN A 202 1 8 HELIX 12 AB3 ASP A 211 LEU A 218 1 8 HELIX 13 AB4 LYS A 219 ALA A 224 5 6 HELIX 14 AB5 ALA A 243 GLY A 248 1 6 HELIX 15 AB6 SER A 250 LEU A 283 1 34 HELIX 16 AB7 ASP A 294 GLY A 299 5 6 HELIX 17 AB8 ASP A 300 ALA A 310 1 11 HELIX 18 AB9 SER A 315 GLU A 329 1 15 SHEET 1 AA1 5 SER A 61 PHE A 65 0 SHEET 2 AA1 5 GLU A 28 GLY A 32 1 N LEU A 31 O PHE A 65 SHEET 3 AA1 5 MSE A 87 THR A 91 1 O MSE A 87 N GLY A 32 SHEET 4 AA1 5 PRO A 236 SER A 242 -1 O LEU A 240 N ALA A 88 SHEET 5 AA1 5 VAL A 139 SER A 146 -1 N VAL A 140 O ILE A 241 SHEET 1 AA2 6 ALA A 187 PRO A 190 0 SHEET 2 AA2 6 LYS A 168 ILE A 171 1 N LEU A 169 O THR A 189 SHEET 3 AA2 6 ALA A 207 MSE A 210 1 O ALA A 207 N ARG A 170 SHEET 4 AA2 6 GLN A 151 SER A 154 -1 N LEU A 153 O ILE A 208 SHEET 5 AA2 6 THR A 226 ILE A 229 -1 O LEU A 228 N ILE A 152 SHEET 6 AA2 6 THR A 289 ARG A 292 1 O THR A 289 N ILE A 227 LINK C GLN A 75 N MSE A 76 1555 1555 1.33 LINK C MSE A 76 N LEU A 77 1555 1555 1.32 LINK C ASP A 86 N MSE A 87 1555 1555 1.34 LINK C MSE A 87 N ALA A 88 1555 1555 1.33 LINK C PHE A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N THR A 91 1555 1555 1.32 LINK C ASN A 101 N MSE A 102 1555 1555 1.34 LINK C MSE A 102 N GLY A 103 1555 1555 1.34 LINK C GLY A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N LEU A 130 1555 1555 1.33 LINK C GLY A 148 N MSE A 149 1555 1555 1.32 LINK C MSE A 149 N ARG A 150 1555 1555 1.32 LINK C PRO A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N PRO A 192 1555 1555 1.34 LINK C ASP A 209 N AMSE A 210 1555 1555 1.33 LINK C ASP A 209 N BMSE A 210 1555 1555 1.33 LINK C AMSE A 210 N ASP A 211 1555 1555 1.33 LINK C BMSE A 210 N ASP A 211 1555 1555 1.32 LINK C HIS A 232 N MSE A 233 1555 1555 1.33 LINK C MSE A 233 N MSE A 234 1555 1555 1.32 LINK C MSE A 234 N PHE A 235 1555 1555 1.33 LINK C PRO A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N VAL A 238 1555 1555 1.33 LINK C GLY A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N SER A 250 1555 1555 1.33 LINK C ALA A 255 N MSE A 256 1555 1555 1.33 LINK C MSE A 256 N ILE A 257 1555 1555 1.33 LINK C LEU A 260 N MSE A 261 1555 1555 1.33 LINK C MSE A 261 N ALA A 262 1555 1555 1.32 LINK C TYR A 272 N MSE A 273 1555 1555 1.33 LINK C MSE A 273 N VAL A 274 1555 1555 1.32 SITE 1 AC1 14 THR A 35 HIS A 39 TRP A 41 THR A 91 SITE 2 AC1 14 ALA A 147 ARG A 150 ARG A 170 THR A 172 SITE 3 AC1 14 LEU A 193 ASP A 211 LEU A 214 PHE A 235 SITE 4 AC1 14 HOH A 656 HOH A 828 SITE 1 AC2 9 PRO A 36 PRO A 38 VAL A 217 LEU A 218 SITE 2 AC2 9 ASN A 330 TYR A 332 PHE A 333 HOH A 542 SITE 3 AC2 9 HOH A 585 CRYST1 62.589 62.983 75.706 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013209 0.00000