HEADER SOLUTE-BINDING PROTEIN 09-APR-14 4PAK TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 VERMINEPHROBACTER EISENIAE EF01-2 (VEIS_3954, TARGET EFI-510324) A TITLE 3 NEPHRIDIAL SYMBIONT OF THE EARTHWORM EISENIA FOETIDA, BOUND TO (R)- TITLE 4 PANTOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER, DCTP SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VERMINEPHROBACTER EISENIAE; SOURCE 3 ORGANISM_TAXID: 391735; SOURCE 4 STRAIN: EF01-2; SOURCE 5 GENE: VEIS_3954; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 3 27-DEC-23 4PAK 1 SOURCE JRNL REMARK REVDAT 2 25-FEB-15 4PAK 1 JRNL REVDAT 1 07-MAY-14 4PAK 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 234754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 11813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9006 - 3.7247 0.99 7390 407 0.1441 0.1485 REMARK 3 2 3.7247 - 2.9579 1.00 7402 431 0.1411 0.1453 REMARK 3 3 2.9579 - 2.5845 1.00 7477 371 0.1373 0.1461 REMARK 3 4 2.5845 - 2.3484 1.00 7459 384 0.1273 0.1333 REMARK 3 5 2.3484 - 2.1802 0.97 7169 383 0.1600 0.1873 REMARK 3 6 2.1802 - 2.0517 1.00 7448 431 0.1196 0.1416 REMARK 3 7 2.0517 - 1.9490 1.00 7478 361 0.1269 0.1353 REMARK 3 8 1.9490 - 1.8642 0.99 7438 375 0.1745 0.1840 REMARK 3 9 1.8642 - 1.7924 1.00 7469 400 0.1273 0.1482 REMARK 3 10 1.7924 - 1.7306 1.00 7410 397 0.1263 0.1520 REMARK 3 11 1.7306 - 1.6765 1.00 7499 376 0.1261 0.1406 REMARK 3 12 1.6765 - 1.6286 1.00 7404 354 0.1287 0.1354 REMARK 3 13 1.6286 - 1.5857 1.00 7519 408 0.1313 0.1527 REMARK 3 14 1.5857 - 1.5470 1.00 7420 399 0.1374 0.1609 REMARK 3 15 1.5470 - 1.5119 1.00 7523 331 0.1431 0.1599 REMARK 3 16 1.5119 - 1.4797 1.00 7405 431 0.1464 0.1590 REMARK 3 17 1.4797 - 1.4501 1.00 7455 394 0.1648 0.1862 REMARK 3 18 1.4501 - 1.4227 1.00 7393 400 0.1609 0.1620 REMARK 3 19 1.4227 - 1.3973 1.00 7408 445 0.1690 0.1842 REMARK 3 20 1.3973 - 1.3736 1.00 7474 391 0.1801 0.1838 REMARK 3 21 1.3736 - 1.3515 1.00 7433 390 0.1844 0.2029 REMARK 3 22 1.3515 - 1.3307 1.00 7466 412 0.1928 0.1936 REMARK 3 23 1.3307 - 1.3111 1.00 7424 405 0.2058 0.2015 REMARK 3 24 1.3111 - 1.2927 1.00 7431 380 0.2293 0.2431 REMARK 3 25 1.2927 - 1.2752 1.00 7391 352 0.2427 0.2467 REMARK 3 26 1.2752 - 1.2586 1.00 7466 379 0.2224 0.1971 REMARK 3 27 1.2586 - 1.2429 1.00 7481 417 0.2271 0.2362 REMARK 3 28 1.2429 - 1.2279 1.00 7435 367 0.2382 0.2642 REMARK 3 29 1.2279 - 1.2136 1.00 7449 431 0.2624 0.2817 REMARK 3 30 1.2136 - 1.2000 1.00 7325 411 0.2550 0.2560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2502 REMARK 3 ANGLE : 1.241 3400 REMARK 3 CHIRALITY : 0.071 372 REMARK 3 PLANARITY : 0.007 451 REMARK 3 DIHEDRAL : 12.992 926 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1152 42.7290 42.0371 REMARK 3 T TENSOR REMARK 3 T11: 0.0742 T22: 0.1452 REMARK 3 T33: 0.1296 T12: -0.0211 REMARK 3 T13: -0.0100 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 2.6701 L22: 0.1355 REMARK 3 L33: 0.1893 L12: -0.1708 REMARK 3 L13: -0.4257 L23: 0.0793 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: -0.0051 S13: -0.1304 REMARK 3 S21: -0.0342 S22: 0.0256 S23: 0.2479 REMARK 3 S31: 0.0887 S32: -0.2828 S33: 0.0179 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2323 50.3775 44.0398 REMARK 3 T TENSOR REMARK 3 T11: 0.0522 T22: 0.0372 REMARK 3 T33: 0.0512 T12: 0.0039 REMARK 3 T13: -0.0065 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.6858 L22: 0.3302 REMARK 3 L33: 0.6254 L12: -0.1118 REMARK 3 L13: -0.2449 L23: -0.0089 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: 0.0005 S13: 0.0251 REMARK 3 S21: -0.0038 S22: 0.0117 S23: 0.0173 REMARK 3 S31: -0.0057 S32: -0.0098 S33: -0.0324 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2684 36.9469 45.1846 REMARK 3 T TENSOR REMARK 3 T11: 0.0669 T22: 0.0542 REMARK 3 T33: 0.0711 T12: -0.0076 REMARK 3 T13: -0.0164 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 4.5262 L22: 0.5821 REMARK 3 L33: 2.1975 L12: -1.0487 REMARK 3 L13: -2.7968 L23: 0.6393 REMARK 3 S TENSOR REMARK 3 S11: -0.0831 S12: -0.0130 S13: -0.2289 REMARK 3 S21: 0.0319 S22: 0.0036 S23: 0.0736 REMARK 3 S31: 0.1532 S32: -0.0552 S33: 0.1002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3915 47.3328 52.2445 REMARK 3 T TENSOR REMARK 3 T11: 0.0722 T22: 0.0810 REMARK 3 T33: 0.0714 T12: 0.0126 REMARK 3 T13: -0.0128 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.4643 L22: 0.3258 REMARK 3 L33: 2.5549 L12: -0.3164 REMARK 3 L13: -0.6052 L23: 0.8248 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: -0.0898 S13: -0.0329 REMARK 3 S21: 0.0200 S22: 0.0344 S23: -0.0156 REMARK 3 S31: 0.1283 S32: 0.1721 S33: -0.0126 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 110.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.79900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (67.0 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 10 MM (R)-PANTOIC ACID); RESERVOIR ( 2.0 M REMARK 280 AMMONIUM SULFATE, 0.1 M BIS-TRIS PH 5.5); CRYOPROTECTION (20% REMARK 280 RESERVOIR + 80% 2.0M LISO4), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.65133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.82567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.82567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.65133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 653 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 672 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 VAL A 20 REMARK 465 ASP A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 GLU A 25 REMARK 465 ASN A 26 REMARK 465 LEU A 27 REMARK 465 TYR A 28 REMARK 465 PHE A 29 REMARK 465 GLN A 30 REMARK 465 SER A 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 121 O GLN A 335 1.38 REMARK 500 OE1 GLN A 335 O HOH A 501 1.92 REMARK 500 O HOH A 504 O HOH A 612 1.95 REMARK 500 OD2 ASP A 143 O HOH A 898 1.98 REMARK 500 O HOH A 878 O HOH A 879 2.03 REMARK 500 O HOH A 596 O HOH A 939 2.04 REMARK 500 NH2 ARG A 121 O GLN A 335 2.04 REMARK 500 O HOH A 1030 O HOH A 1033 2.11 REMARK 500 O HOH A 1026 O HOH A 1034 2.16 REMARK 500 O HOH A 849 O HOH A 966 2.17 REMARK 500 O4 SO4 A 405 O HOH A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 136 HZ1 LYS A 228 3565 1.39 REMARK 500 OE1 GLN A 136 NZ LYS A 228 3565 2.10 REMARK 500 O HOH A 613 O HOH A 628 3565 2.13 REMARK 500 O HOH A 655 O HOH A 655 4556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 153 -155.68 -136.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 334 GLN A 335 -149.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 824 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 878 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 919 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 961 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1022 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A1036 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A1075 DISTANCE = 6.10 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PAF A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510324 RELATED DB: TARGETTRACK DBREF 4PAK A 33 335 UNP A1WPV4 A1WPV4_VEREI 33 335 SEQADV 4PAK MSE A 10 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK HIS A 11 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK HIS A 12 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK HIS A 13 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK HIS A 14 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK HIS A 15 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK HIS A 16 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK SER A 17 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK SER A 18 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK GLY A 19 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK VAL A 20 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK ASP A 21 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK LEU A 22 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK GLY A 23 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK THR A 24 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK GLU A 25 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK ASN A 26 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK LEU A 27 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK TYR A 28 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK PHE A 29 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK GLN A 30 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK SER A 31 UNP A1WPV4 EXPRESSION TAG SEQADV 4PAK MSE A 32 UNP A1WPV4 EXPRESSION TAG SEQRES 1 A 326 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 326 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ALA ALA GLN SEQRES 3 A 326 THR THR MSE ARG ILE ASN ILE SER THR ALA GLN ASN SER SEQRES 4 A 326 HIS GLN GLY VAL ALA ILE ASP THR PHE ALA LYS GLU VAL SEQRES 5 A 326 GLU LYS ARG THR GLY GLY ARG TYR LYS VAL GLN THR PHE SEQRES 6 A 326 TYR ASN ALA ALA LEU GLY ALA GLU ARG GLU SER VAL GLU SEQRES 7 A 326 ALA VAL GLN LEU GLY THR HIS GLU LEU THR PHE SER SER SEQRES 8 A 326 SER GLY PRO ILE PRO ASN PHE VAL PRO GLU THR LYS ILE SEQRES 9 A 326 LEU ASP VAL PRO PHE LEU PHE ARG ASP LYS ALA HIS ALA SEQRES 10 A 326 ARG ALA VAL LEU ASP GLY PRO ILE GLY GLN GLU LEU LEU SEQRES 11 A 326 THR ARG PHE ASP GLY LYS GLY PHE LYS ALA LEU ALA TRP SEQRES 12 A 326 ALA GLU ASN GLY PHE ARG HIS MSE SER ASN SER LYS ARG SEQRES 13 A 326 ALA VAL LYS GLU PRO GLY ASP LEU LYS GLY LEU LYS MSE SEQRES 14 A 326 ARG THR MSE GLU ASN PRO VAL HIS ILE ALA ALA TYR LYS SEQRES 15 A 326 GLY PHE GLY ILE VAL THR THR PRO MSE ALA PHE SER GLU SEQRES 16 A 326 VAL PHE THR ALA LEU GLN GLN GLY THR VAL ASP GLY GLN SEQRES 17 A 326 GLU ASN PRO LEU SER VAL ILE ILE SER ALA LYS PHE ASP SEQRES 18 A 326 GLN VAL GLN LYS HIS LEU THR LEU THR GLY HIS VAL TYR SEQRES 19 A 326 SER PRO ALA LEU PHE LEU MSE ASN LYS ALA LEU PHE ASP SEQRES 20 A 326 LYS LEU PRO ALA ALA ASP GLN GLN ALA PHE ILE ASP ALA SEQRES 21 A 326 ALA ARG GLN GLY ALA LYS LEU ASN ARG ALA ARG VAL ASP SEQRES 22 A 326 GLU ASP ASP ALA LYS GLY VAL ALA ASP LEU ARG ALA LYS SEQRES 23 A 326 GLY MSE THR VAL ILE ASP ASN ILE ASP LYS ALA ARG PHE SEQRES 24 A 326 VAL ALA ALA LEU ALA PRO VAL ASN ALA GLN PHE GLU LYS SEQRES 25 A 326 GLN PHE GLY LYS ALA ALA LEU GLU GLN ILE ARG SER ALA SEQRES 26 A 326 GLN MODRES 4PAK MSE A 38 MET MODIFIED RESIDUE MODRES 4PAK MSE A 160 MET MODIFIED RESIDUE MODRES 4PAK MSE A 178 MET MODIFIED RESIDUE MODRES 4PAK MSE A 181 MET MODIFIED RESIDUE MODRES 4PAK MSE A 200 MET MODIFIED RESIDUE MODRES 4PAK MSE A 250 MET MODIFIED RESIDUE MODRES 4PAK MSE A 297 MET MODIFIED RESIDUE HET MSE A 32 16 HET MSE A 38 17 HET MSE A 160 17 HET MSE A 178 17 HET MSE A 181 17 HET MSE A 200 34 HET MSE A 250 17 HET MSE A 297 17 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET PAF A 407 21 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM PAF PANTOATE HETSYN PAF 2,4-DIHYDROXY-3,3-DIMETHYL-BUTYRATE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 PAF C6 H11 O4 1- FORMUL 9 HOH *575(H2 O) HELIX 1 AA1 SER A 48 THR A 65 1 18 HELIX 2 AA2 ALA A 81 GLY A 92 1 12 HELIX 3 AA3 PRO A 103 PHE A 107 5 5 HELIX 4 AA4 VAL A 108 VAL A 116 5 9 HELIX 5 AA5 ASP A 122 GLY A 132 1 11 HELIX 6 AA6 GLY A 132 ARG A 141 1 10 HELIX 7 AA7 PHE A 142 LYS A 145 5 4 HELIX 8 AA8 GLU A 169 LYS A 174 5 6 HELIX 9 AA9 ASN A 183 PHE A 193 1 11 HELIX 10 AB1 ALA A 201 SER A 203 5 3 HELIX 11 AB2 GLU A 204 GLY A 212 1 9 HELIX 12 AB3 PRO A 220 ALA A 227 1 8 HELIX 13 AB4 LYS A 228 VAL A 232 5 5 HELIX 14 AB5 LYS A 252 LEU A 258 1 7 HELIX 15 AB6 PRO A 259 LYS A 295 1 37 HELIX 16 AB7 ASP A 304 LEU A 312 1 9 HELIX 17 AB8 LEU A 312 GLY A 324 1 13 HELIX 18 AB9 GLY A 324 SER A 333 1 10 SHEET 1 AA1 6 TYR A 69 PHE A 74 0 SHEET 2 AA1 6 THR A 36 ASN A 41 1 N MSE A 38 O GLN A 72 SHEET 3 AA1 6 LEU A 96 SER A 100 1 O PHE A 98 N ASN A 41 SHEET 4 AA1 6 HIS A 235 ASN A 251 -1 O LEU A 249 N THR A 97 SHEET 5 AA1 6 PHE A 147 ASN A 162 -1 N ALA A 153 O ALA A 246 SHEET 6 AA1 6 GLY A 216 ASN A 219 -1 O GLN A 217 N SER A 161 SHEET 1 AA2 5 TYR A 69 PHE A 74 0 SHEET 2 AA2 5 THR A 36 ASN A 41 1 N MSE A 38 O GLN A 72 SHEET 3 AA2 5 LEU A 96 SER A 100 1 O PHE A 98 N ASN A 41 SHEET 4 AA2 5 HIS A 235 ASN A 251 -1 O LEU A 249 N THR A 97 SHEET 5 AA2 5 THR A 298 ILE A 300 1 O ILE A 300 N LEU A 236 SHEET 1 AA3 2 LYS A 177 THR A 180 0 SHEET 2 AA3 2 VAL A 196 PRO A 199 1 O VAL A 196 N MSE A 178 LINK C MSE A 32 N ALA A 33 1555 1555 1.33 LINK C THR A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N ARG A 39 1555 1555 1.33 LINK C HIS A 159 N MSE A 160 1555 1555 1.33 LINK C MSE A 160 N SER A 161 1555 1555 1.33 LINK C LYS A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N ARG A 179 1555 1555 1.32 LINK C THR A 180 N MSE A 181 1555 1555 1.32 LINK C MSE A 181 N GLU A 182 1555 1555 1.32 LINK C PRO A 199 N AMSE A 200 1555 1555 1.32 LINK C PRO A 199 N BMSE A 200 1555 1555 1.33 LINK C AMSE A 200 N ALA A 201 1555 1555 1.33 LINK C BMSE A 200 N ALA A 201 1555 1555 1.33 LINK C LEU A 249 N MSE A 250 1555 1555 1.33 LINK C MSE A 250 N ASN A 251 1555 1555 1.33 LINK C GLY A 296 N MSE A 297 1555 1555 1.32 LINK C MSE A 297 N THR A 298 1555 1555 1.32 SITE 1 AC1 10 ILE A 303 ASP A 304 LYS A 305 ALA A 306 SITE 2 AC1 10 ARG A 332 HOH A 521 HOH A 528 HOH A 593 SITE 3 AC1 10 HOH A 800 HOH A 967 SITE 1 AC2 8 ASP A 122 LYS A 123 HOH A 765 HOH A 804 SITE 2 AC2 8 HOH A 805 HOH A 820 HOH A 829 HOH A 859 SITE 1 AC3 10 GLU A 169 PRO A 170 GLY A 171 ARG A 307 SITE 2 AC3 10 LYS A 325 HOH A 537 HOH A 571 HOH A 844 SITE 3 AC3 10 HOH A 861 HOH A 870 SITE 1 AC4 8 ASN A 106 PRO A 184 HOH A 708 HOH A 784 SITE 2 AC4 8 HOH A 796 HOH A 834 HOH A 911 HOH A 974 SITE 1 AC5 6 MSE A 32 ARG A 39 LYS A 325 ALA A 326 SITE 2 AC5 6 HOH A 502 HOH A 547 SITE 1 AC6 8 LYS A 148 LYS A 228 ILE A 267 ARG A 271 SITE 2 AC6 8 HOH A 503 HOH A 505 HOH A 514 HOH A 548 SITE 1 AC7 10 GLN A 50 GLU A 82 SER A 100 ASN A 155 SITE 2 AC7 10 ARG A 158 ARG A 179 MSE A 181 PHE A 202 SITE 3 AC7 10 ASN A 219 HOH A 675 CRYST1 78.023 78.023 110.477 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012817 0.007400 0.000000 0.00000 SCALE2 0.000000 0.014799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009052 0.00000 HETATM 1 N MSE A 32 -36.562 44.388 44.470 1.00 47.70 N ANISOU 1 N MSE A 32 4392 7010 6722 -365 -94 149 N HETATM 2 CA MSE A 32 -35.338 43.896 45.093 1.00 39.50 C ANISOU 2 CA MSE A 32 3413 5936 5659 -377 -58 168 C HETATM 3 C MSE A 32 -34.208 44.900 44.888 1.00 40.91 C ANISOU 3 C MSE A 32 3650 6103 5791 -317 -70 176 C HETATM 4 O MSE A 32 -34.023 45.422 43.787 1.00 34.84 O ANISOU 4 O MSE A 32 2889 5342 5007 -292 -121 169 O HETATM 5 CB MSE A 32 -34.951 42.536 44.507 1.00 41.41 C ANISOU 5 CB MSE A 32 3662 6145 5926 -446 -71 153 C HETATM 6 CG MSE A 32 -33.869 41.803 45.292 1.00 44.92 C ANISOU 6 CG MSE A 32 4156 6547 6363 -468 -23 185 C HETATM 7 SE MSE A 32 -33.857 39.884 44.937 0.90 65.86 SE ANISOU 7 SE MSE A 32 6784 9139 9101 -570 -8 161 SE HETATM 8 CE MSE A 32 -32.744 39.296 46.428 1.00 41.93 C ANISOU 8 CE MSE A 32 3810 6069 6052 -570 75 249 C HETATM 9 HA MSE A 32 -35.493 43.780 46.054 1.00 47.40 H HETATM 10 HB2 MSE A 32 -35.738 41.969 44.489 1.00 49.69 H HETATM 11 HB3 MSE A 32 -34.623 42.668 43.604 1.00 49.69 H HETATM 12 HG2 MSE A 32 -33.002 42.160 45.045 1.00 53.90 H HETATM 13 HG3 MSE A 32 -34.024 41.932 46.241 1.00 53.90 H HETATM 14 HE1 MSE A 32 -32.645 38.342 46.386 1.00 50.32 H HETATM 15 HE2 MSE A 32 -31.884 39.718 46.362 1.00 50.32 H HETATM 16 HE3 MSE A 32 -33.169 39.545 47.252 1.00 50.32 H