HEADER SOLUTE-BINDING PROTEIN 12-APR-14 4PBH TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND TITLE 3 BENZOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER, DCTP SUBUNIT, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUEGERIA POMEROYI; SOURCE 3 ORGANISM_TAXID: 246200; SOURCE 4 STRAIN: DSS-3; SOURCE 5 GENE: SPO1773; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 6 27-DEC-23 4PBH 1 REMARK REVDAT 5 25-DEC-19 4PBH 1 REMARK REVDAT 4 27-SEP-17 4PBH 1 REMARK REVDAT 3 26-AUG-15 4PBH 1 REMARK REVDAT 2 25-FEB-15 4PBH 1 JRNL REVDAT 1 07-MAY-14 4PBH 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 166799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 8406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8889 - 3.7276 0.75 4248 247 0.1750 0.1745 REMARK 3 2 3.7276 - 2.9590 0.90 5156 295 0.1424 0.1613 REMARK 3 3 2.9590 - 2.5851 0.93 5361 257 0.1411 0.1459 REMARK 3 4 2.5851 - 2.3488 1.00 5711 318 0.1302 0.1583 REMARK 3 5 2.3488 - 2.1804 1.00 5694 326 0.1266 0.1295 REMARK 3 6 2.1804 - 2.0519 1.00 5730 290 0.1270 0.1349 REMARK 3 7 2.0519 - 1.9491 1.00 5662 357 0.1274 0.1469 REMARK 3 8 1.9491 - 1.8643 1.00 5745 308 0.1302 0.1430 REMARK 3 9 1.8643 - 1.7925 1.00 5666 302 0.1294 0.1471 REMARK 3 10 1.7925 - 1.7307 1.00 5764 310 0.1272 0.1430 REMARK 3 11 1.7307 - 1.6766 1.00 5679 341 0.1295 0.1548 REMARK 3 12 1.6766 - 1.6286 1.00 5736 304 0.1243 0.1470 REMARK 3 13 1.6286 - 1.5858 1.00 5766 263 0.1302 0.1546 REMARK 3 14 1.5858 - 1.5471 1.00 5730 282 0.1251 0.1435 REMARK 3 15 1.5471 - 1.5119 1.00 5719 295 0.1293 0.1382 REMARK 3 16 1.5119 - 1.4797 1.00 5755 289 0.1347 0.1482 REMARK 3 17 1.4797 - 1.4501 1.00 5720 284 0.1404 0.1546 REMARK 3 18 1.4501 - 1.4228 1.00 5739 278 0.1376 0.1463 REMARK 3 19 1.4228 - 1.3973 1.00 5766 293 0.1419 0.1623 REMARK 3 20 1.3973 - 1.3737 1.00 5727 302 0.1453 0.1699 REMARK 3 21 1.3737 - 1.3515 1.00 5725 302 0.1499 0.1650 REMARK 3 22 1.3515 - 1.3307 1.00 5654 293 0.1522 0.1612 REMARK 3 23 1.3307 - 1.3111 0.98 5635 307 0.1550 0.1616 REMARK 3 24 1.3111 - 1.2927 0.90 5195 287 0.1709 0.1548 REMARK 3 25 1.2927 - 1.2752 0.84 4750 263 0.1654 0.1876 REMARK 3 26 1.2752 - 1.2586 0.78 4472 230 0.1761 0.1952 REMARK 3 27 1.2586 - 1.2429 0.73 4153 216 0.1848 0.1668 REMARK 3 28 1.2429 - 1.2279 0.67 3812 204 0.1826 0.2193 REMARK 3 29 1.2279 - 1.2136 0.63 3656 166 0.1972 0.2088 REMARK 3 30 1.2136 - 1.2000 0.58 3267 197 0.2006 0.1958 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2459 REMARK 3 ANGLE : 1.432 3350 REMARK 3 CHIRALITY : 0.085 375 REMARK 3 PLANARITY : 0.008 443 REMARK 3 DIHEDRAL : 14.306 896 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9858 32.5968 -1.3933 REMARK 3 T TENSOR REMARK 3 T11: 0.0549 T22: 0.0438 REMARK 3 T33: 0.0285 T12: 0.0029 REMARK 3 T13: 0.0057 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.2165 L22: 2.4435 REMARK 3 L33: 0.8806 L12: -0.4154 REMARK 3 L13: -0.1376 L23: 0.3075 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: 0.0812 S13: -0.0776 REMARK 3 S21: -0.0898 S22: -0.0039 S23: -0.0419 REMARK 3 S31: 0.1508 S32: -0.0098 S33: 0.0103 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5592 38.0270 9.5780 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0403 REMARK 3 T33: 0.0402 T12: 0.0044 REMARK 3 T13: 0.0091 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.2589 L22: 0.4785 REMARK 3 L33: 0.4402 L12: 0.2328 REMARK 3 L13: 0.0138 L23: -0.0890 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: 0.0040 S13: -0.0256 REMARK 3 S21: -0.0365 S22: 0.0120 S23: -0.0199 REMARK 3 S31: 0.0306 S32: -0.0252 S33: -0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9646 37.8906 17.0874 REMARK 3 T TENSOR REMARK 3 T11: 0.0509 T22: 0.0615 REMARK 3 T33: 0.0520 T12: 0.0053 REMARK 3 T13: -0.0008 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.3129 L22: 1.5123 REMARK 3 L33: 0.4005 L12: 1.7575 REMARK 3 L13: -0.7600 L23: -0.7405 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: -0.1034 S13: -0.0892 REMARK 3 S21: 0.0286 S22: -0.0686 S23: -0.0811 REMARK 3 S31: 0.0101 S32: 0.0574 S33: 0.0301 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5010 55.5223 8.9124 REMARK 3 T TENSOR REMARK 3 T11: 0.0403 T22: 0.0475 REMARK 3 T33: 0.0275 T12: 0.0002 REMARK 3 T13: -0.0021 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.5723 L22: 1.8450 REMARK 3 L33: 0.5249 L12: 0.1322 REMARK 3 L13: -0.2067 L23: -0.1546 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: 0.0125 S13: 0.1067 REMARK 3 S21: 0.0023 S22: -0.0349 S23: -0.0237 REMARK 3 S31: -0.1000 S32: 0.0051 S33: -0.0097 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4571 57.3068 8.5245 REMARK 3 T TENSOR REMARK 3 T11: 0.0416 T22: 0.0507 REMARK 3 T33: 0.0696 T12: 0.0056 REMARK 3 T13: 0.0024 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.5173 L22: 0.5177 REMARK 3 L33: 2.1961 L12: 0.3201 REMARK 3 L13: 0.2048 L23: 0.6145 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: 0.0375 S13: 0.0283 REMARK 3 S21: -0.0233 S22: 0.0065 S23: 0.0783 REMARK 3 S31: -0.0537 S32: -0.0714 S33: 0.0058 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9247 44.7699 3.6800 REMARK 3 T TENSOR REMARK 3 T11: 0.0305 T22: 0.0509 REMARK 3 T33: 0.0344 T12: 0.0055 REMARK 3 T13: 0.0040 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.4527 L22: 1.0039 REMARK 3 L33: 0.4382 L12: 0.3449 REMARK 3 L13: -0.1882 L23: -0.2331 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: 0.0245 S13: -0.0123 REMARK 3 S21: -0.0584 S22: -0.0087 S23: -0.0598 REMARK 3 S31: 0.0216 S32: -0.0025 S33: 0.0265 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1831 61.4001 12.3599 REMARK 3 T TENSOR REMARK 3 T11: 0.0921 T22: 0.0748 REMARK 3 T33: 0.0617 T12: -0.0034 REMARK 3 T13: 0.0080 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.1581 L22: 0.2450 REMARK 3 L33: 2.4275 L12: 0.1098 REMARK 3 L13: -0.3434 L23: -0.7122 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: -0.0112 S13: 0.0254 REMARK 3 S21: 0.0164 S22: -0.0704 S23: -0.0693 REMARK 3 S31: -0.1712 S32: 0.1796 S33: 0.0491 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6766 46.7367 20.5545 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.1088 REMARK 3 T33: 0.0834 T12: -0.0278 REMARK 3 T13: -0.0179 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.1347 L22: 0.3588 REMARK 3 L33: 1.5301 L12: -0.1605 REMARK 3 L13: -0.5229 L23: 0.0483 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: -0.3111 S13: 0.0235 REMARK 3 S21: 0.0723 S22: -0.0293 S23: -0.0694 REMARK 3 S31: -0.1487 S32: 0.3397 S33: -0.0427 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87202 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.402 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (67.94 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 10 MM BENZOIC ACID); RESERVOIR (0.1 M BIS-TRIS REMARK 280 PROPANE PH 7, 60 %(V/V) TACSIMATE); CRYOPROTECTION (80% REMARK 280 RESERVOIR + 20% GLYCEROL), PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.29550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.87000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.46450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.87000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.29550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.46450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ILE A 3 REMARK 465 SER A 4 REMARK 465 PHE A 5 REMARK 465 LYS A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 ARG A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 CYS A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 GLN A 334 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 39 H TRP A 41 1.31 REMARK 500 O HOH A 874 O HOH A 893 1.88 REMARK 500 O HOH A 878 O HOH A 947 2.04 REMARK 500 O ARG A 155 OD2 ASP A 225 2.04 REMARK 500 O HOH A 808 O HOH A 845 2.05 REMARK 500 O HOH A 664 O HOH A 867 2.06 REMARK 500 O HOH A 532 O HOH A 661 2.06 REMARK 500 O HOH A 607 O HOH A 784 2.07 REMARK 500 O HOH A 814 O HOH A 934 2.13 REMARK 500 O HOH A 888 O HOH A 946 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 624 O HOH A 641 4565 1.99 REMARK 500 O HOH A 633 O HOH A 646 4465 2.04 REMARK 500 O HOH A 590 O HOH A 594 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 76 CG - SE - CE ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 147 -155.66 -110.14 REMARK 500 ALA A 147 -155.66 -103.95 REMARK 500 ALA A 187 75.43 -119.10 REMARK 500 LEU A 331 35.04 -97.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 871 DISTANCE = 6.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510260 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4PAF RELATED DB: PDB REMARK 900 RELATED ID: 4PAI RELATED DB: PDB DBREF 4PBH A 1 327 UNP Q5LSJ5 Q5LSJ5_RUEPO 1 327 SEQADV 4PBH SER A 37 UNP Q5LSJ5 PRO 37 ENGINEERED MUTATION SEQADV 4PBH CYS A 220 UNP Q5LSJ5 TYR 220 ENGINEERED MUTATION SEQADV 4PBH ALA A 328 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PBH GLU A 329 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PBH ASN A 330 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PBH LEU A 331 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PBH TYR A 332 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PBH PHE A 333 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PBH GLN A 334 UNP Q5LSJ5 EXPRESSION TAG SEQRES 1 A 334 MSE THR ILE SER PHE LYS GLY LEU ALA ARG GLY VAL ALA SEQRES 2 A 334 CYS ALA ALA LEU VAL LEU ALA ALA LEU PRO ALA ALA ALA SEQRES 3 A 334 LYS GLU PHE ARG LEU GLY LEU ILE THR PRO SER PRO HIS SEQRES 4 A 334 THR TRP THR LYS ALA ALA GLU ALA PHE GLY ALA GLU LEU SEQRES 5 A 334 SER GLU LYS SER GLY GLY ALA HIS SER VAL SER VAL PHE SEQRES 6 A 334 PRO ALA ARG GLN LEU GLY ASN GLU ALA GLN MSE LEU GLN SEQRES 7 A 334 GLN LEU GLN THR GLY ALA LEU ASP MSE ALA PHE MSE THR SEQRES 8 A 334 VAL ALA GLU VAL SER ASN ARG VAL PRO ASN MSE GLY ALA SEQRES 9 A 334 PHE TYR ALA PRO TYR LEU ALA GLY ASP ILE ASN HIS ALA SEQRES 10 A 334 ALA ALA ILE LEU ARG SER ASP THR ALA ARG GLY MSE LEU SEQRES 11 A 334 ALA VAL LEU PRO GLN GLU ALA GLY VAL VAL GLY VAL GLY SEQRES 12 A 334 PHE GLY SER ALA GLY MSE ARG GLN ILE LEU SER ARG GLY SEQRES 13 A 334 ALA VAL ASN SER ALA ALA ASP LEU SER GLY LEU LYS LEU SEQRES 14 A 334 ARG ILE THR PRO PHE ASP PRO ILE LEU ASP PHE TYR ASN SEQRES 15 A 334 ALA LEU GLY ALA ALA PRO THR PRO MSE PRO LEU PRO ALA SEQRES 16 A 334 VAL TYR ASP ALA LEU ALA ASN GLY GLN VAL ASP ALA ILE SEQRES 17 A 334 ASP MSE ASP VAL GLU LEU ILE ASN VAL LEU LYS CYS HIS SEQRES 18 A 334 GLU HIS ALA ASP THR ILE LEU ILE SER ASN HIS MSE MSE SEQRES 19 A 334 PHE PRO MSE VAL GLY LEU ILE SER ALA ARG VAL TYR ALA SEQRES 20 A 334 GLY MSE SER ASP ALA ASP LYS ALA MSE ILE SER GLU LEU SEQRES 21 A 334 MSE ALA LYS HIS VAL ASP SER THR LEU ASP VAL TYR MSE SEQRES 22 A 334 VAL LYS GLU PRO GLU TRP THR ASP ALA LEU THR LYS VAL SEQRES 23 A 334 GLY LYS THR PHE LYS ARG VAL ASP GLN SER PHE PHE GLY SEQRES 24 A 334 ASP ALA ILE ALA GLN TRP GLU THR ILE TRP ALA ASP LYS SEQRES 25 A 334 ALA PRO SER LEU PRO GLU LEU ARG LYS THR ALA ALA ASP SEQRES 26 A 334 LEU GLN ALA GLU ASN LEU TYR PHE GLN MODRES 4PBH MSE A 76 MET MODIFIED RESIDUE MODRES 4PBH MSE A 87 MET MODIFIED RESIDUE MODRES 4PBH MSE A 90 MET MODIFIED RESIDUE MODRES 4PBH MSE A 102 MET MODIFIED RESIDUE MODRES 4PBH MSE A 129 MET MODIFIED RESIDUE MODRES 4PBH MSE A 149 MET MODIFIED RESIDUE MODRES 4PBH MSE A 191 MET MODIFIED RESIDUE MODRES 4PBH MSE A 210 MET MODIFIED RESIDUE MODRES 4PBH MSE A 233 MET MODIFIED RESIDUE MODRES 4PBH MSE A 234 MET MODIFIED RESIDUE MODRES 4PBH MSE A 237 MET MODIFIED RESIDUE MODRES 4PBH MSE A 249 MET MODIFIED RESIDUE MODRES 4PBH MSE A 256 MET MODIFIED RESIDUE MODRES 4PBH MSE A 261 MET MODIFIED RESIDUE MODRES 4PBH MSE A 273 MET MODIFIED RESIDUE HET MSE A 76 17 HET MSE A 87 17 HET MSE A 90 17 HET MSE A 102 17 HET MSE A 129 17 HET MSE A 149 17 HET MSE A 191 34 HET MSE A 210 34 HET MSE A 233 17 HET MSE A 234 17 HET MSE A 237 17 HET MSE A 249 17 HET MSE A 256 17 HET MSE A 261 17 HET MSE A 273 17 HET BEZ A 401 14 HETNAM MSE SELENOMETHIONINE HETNAM BEZ BENZOIC ACID FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 2 BEZ C7 H6 O2 FORMUL 3 HOH *470(H2 O) HELIX 1 AA1 HIS A 39 SER A 56 1 18 HELIX 2 AA2 ASN A 72 GLY A 83 1 12 HELIX 3 AA3 VAL A 92 VAL A 99 1 8 HELIX 4 AA4 PRO A 100 ALA A 107 5 8 HELIX 5 AA5 ASP A 113 SER A 123 1 11 HELIX 6 AA6 SER A 123 LEU A 130 1 8 HELIX 7 AA7 VAL A 132 GLY A 138 1 7 HELIX 8 AA8 SER A 160 SER A 165 5 6 HELIX 9 AA9 PHE A 174 GLY A 185 1 12 HELIX 10 AB1 PRO A 192 PRO A 194 5 3 HELIX 11 AB2 ALA A 195 ASN A 202 1 8 HELIX 12 AB3 ASP A 211 LEU A 218 1 8 HELIX 13 AB4 LYS A 219 ALA A 224 5 6 HELIX 14 AB5 ALA A 243 MSE A 249 1 7 HELIX 15 AB6 SER A 250 LEU A 283 1 34 HELIX 16 AB7 ASP A 294 GLY A 299 5 6 HELIX 17 AB8 ASP A 300 ALA A 310 1 11 HELIX 18 AB9 SER A 315 GLU A 329 1 15 SHEET 1 AA1 5 SER A 61 PHE A 65 0 SHEET 2 AA1 5 GLU A 28 GLY A 32 1 N LEU A 31 O PHE A 65 SHEET 3 AA1 5 MSE A 87 THR A 91 1 O MSE A 87 N GLY A 32 SHEET 4 AA1 5 PRO A 236 SER A 242 -1 O LEU A 240 N ALA A 88 SHEET 5 AA1 5 VAL A 139 SER A 146 -1 N VAL A 140 O ILE A 241 SHEET 1 AA2 6 ALA A 187 PRO A 190 0 SHEET 2 AA2 6 LYS A 168 ILE A 171 1 N LEU A 169 O THR A 189 SHEET 3 AA2 6 ALA A 207 MSE A 210 1 O ALA A 207 N ARG A 170 SHEET 4 AA2 6 GLN A 151 SER A 154 -1 N LEU A 153 O ILE A 208 SHEET 5 AA2 6 THR A 226 ILE A 229 -1 O LEU A 228 N ILE A 152 SHEET 6 AA2 6 THR A 289 ARG A 292 1 O THR A 289 N ILE A 227 LINK C GLN A 75 N MSE A 76 1555 1555 1.32 LINK C MSE A 76 N LEU A 77 1555 1555 1.33 LINK C ASP A 86 N MSE A 87 1555 1555 1.33 LINK C MSE A 87 N ALA A 88 1555 1555 1.33 LINK C PHE A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N THR A 91 1555 1555 1.32 LINK C ASN A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N GLY A 103 1555 1555 1.33 LINK C GLY A 128 N MSE A 129 1555 1555 1.32 LINK C MSE A 129 N LEU A 130 1555 1555 1.33 LINK C GLY A 148 N MSE A 149 1555 1555 1.32 LINK C MSE A 149 N ARG A 150 1555 1555 1.32 LINK C PRO A 190 N AMSE A 191 1555 1555 1.33 LINK C PRO A 190 N BMSE A 191 1555 1555 1.32 LINK C AMSE A 191 N PRO A 192 1555 1555 1.35 LINK C BMSE A 191 N PRO A 192 1555 1555 1.33 LINK C ASP A 209 N AMSE A 210 1555 1555 1.33 LINK C ASP A 209 N BMSE A 210 1555 1555 1.33 LINK C AMSE A 210 N ASP A 211 1555 1555 1.33 LINK C BMSE A 210 N ASP A 211 1555 1555 1.32 LINK C HIS A 232 N MSE A 233 1555 1555 1.33 LINK C MSE A 233 N MSE A 234 1555 1555 1.32 LINK C MSE A 234 N PHE A 235 1555 1555 1.33 LINK C PRO A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N VAL A 238 1555 1555 1.33 LINK C GLY A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N SER A 250 1555 1555 1.32 LINK C ALA A 255 N MSE A 256 1555 1555 1.32 LINK C MSE A 256 N ILE A 257 1555 1555 1.33 LINK C LEU A 260 N MSE A 261 1555 1555 1.32 LINK C MSE A 261 N ALA A 262 1555 1555 1.32 LINK C TYR A 272 N MSE A 273 1555 1555 1.33 LINK C MSE A 273 N VAL A 274 1555 1555 1.32 SITE 1 AC1 10 TRP A 41 THR A 91 ARG A 150 ARG A 170 SITE 2 AC1 10 THR A 172 LEU A 193 MSE A 210 LEU A 214 SITE 3 AC1 10 PHE A 235 HOH A 696 CRYST1 62.591 62.929 75.740 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013203 0.00000