HEADER TRANSLATION 14-APR-14 4PC7 TITLE ELONGATION FACTOR TU:TS COMPLEX IN A NEAR GTP CONFORMATION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR TU 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EF-TU 1,P-43; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ELONGATION FACTOR TS; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: EF-TS; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: TUFA, B3339, JW3301; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 83333; SOURCE 11 STRAIN: K12; SOURCE 12 GENE: TSF, B0170, JW0165; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS G:GEF:NUCLEOTIDE COMPLEX, ELONGATION FACTOR, TRANSLATION, PROTEIN KEYWDS 2 SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.S.THIRUP REVDAT 5 27-DEC-23 4PC7 1 COMPND REMARK HETNAM REVDAT 4 07-MAR-18 4PC7 1 SOURCE JRNL REMARK REVDAT 3 15-JUL-15 4PC7 1 JRNL REVDAT 2 01-JUL-15 4PC7 1 JRNL REVDAT 1 06-MAY-15 4PC7 0 JRNL AUTH S.S.THIRUP,L.B.VAN,T.K.NIELSEN,C.R.KNUDSEN JRNL TITL STRUCTURAL OUTLINE OF THE DETAILED MECHANISM FOR ELONGATION JRNL TITL 2 FACTOR TS-MEDIATED GUANINE NUCLEOTIDE EXCHANGE ON ELONGATION JRNL TITL 3 FACTOR TU. JRNL REF J.STRUCT.BIOL. V. 191 10 2015 JRNL REFN ESSN 1095-8657 JRNL PMID 26073967 JRNL DOI 10.1016/J.JSB.2015.06.011 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1702) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5014 - 6.5224 0.97 2896 149 0.1783 0.2168 REMARK 3 2 6.5224 - 5.1862 1.00 2838 148 0.2716 0.3049 REMARK 3 3 5.1862 - 4.5333 1.00 2833 149 0.2533 0.2559 REMARK 3 4 4.5333 - 4.1200 1.00 2818 147 0.2890 0.3107 REMARK 3 5 4.1200 - 3.8254 1.00 2805 151 0.3341 0.3358 REMARK 3 6 3.8254 - 3.6003 1.00 2777 146 0.4065 0.4520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.720 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4961 REMARK 3 ANGLE : 0.573 6701 REMARK 3 CHIRALITY : 0.026 776 REMARK 3 PLANARITY : 0.002 869 REMARK 3 DIHEDRAL : 12.701 1852 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6824 71.2413 58.0941 REMARK 3 T TENSOR REMARK 3 T11: 0.6082 T22: 0.6170 REMARK 3 T33: 1.0791 T12: -0.0635 REMARK 3 T13: 0.0803 T23: 0.1140 REMARK 3 L TENSOR REMARK 3 L11: 6.1288 L22: 4.0675 REMARK 3 L33: 4.8933 L12: 1.4006 REMARK 3 L13: 0.9957 L23: 1.9059 REMARK 3 S TENSOR REMARK 3 S11: -0.1482 S12: -0.0985 S13: 0.2015 REMARK 3 S21: 0.0083 S22: 0.2043 S23: -0.1073 REMARK 3 S31: -0.7466 S32: 0.2499 S33: -0.1261 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 211 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4385 95.7973 48.5810 REMARK 3 T TENSOR REMARK 3 T11: 1.8706 T22: 0.9989 REMARK 3 T33: 1.5742 T12: -0.3197 REMARK 3 T13: -0.2752 T23: 0.3280 REMARK 3 L TENSOR REMARK 3 L11: 4.4501 L22: 1.3850 REMARK 3 L33: 3.4063 L12: -0.1384 REMARK 3 L13: 1.9157 L23: 0.7404 REMARK 3 S TENSOR REMARK 3 S11: -0.5417 S12: 0.9374 S13: 1.0962 REMARK 3 S21: -0.1930 S22: 0.0446 S23: 0.1218 REMARK 3 S31: -1.9004 S32: 0.8342 S33: 0.5327 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8614 66.3537 74.7292 REMARK 3 T TENSOR REMARK 3 T11: 0.8327 T22: 1.1189 REMARK 3 T33: 1.4775 T12: 0.2456 REMARK 3 T13: -0.1264 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 7.2618 L22: 7.0932 REMARK 3 L33: 9.3383 L12: 2.6957 REMARK 3 L13: 1.2066 L23: 2.4340 REMARK 3 S TENSOR REMARK 3 S11: 0.2583 S12: -1.0393 S13: -2.2377 REMARK 3 S21: 0.2813 S22: 0.2520 S23: -1.1480 REMARK 3 S31: 0.2666 S32: -0.5322 S33: -0.4315 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 53 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5055 94.3023 90.0731 REMARK 3 T TENSOR REMARK 3 T11: 1.4139 T22: 0.7186 REMARK 3 T33: 1.3617 T12: -0.1859 REMARK 3 T13: -0.2770 T23: -0.1157 REMARK 3 L TENSOR REMARK 3 L11: 7.1555 L22: 2.4555 REMARK 3 L33: 7.7116 L12: -3.0258 REMARK 3 L13: -1.4195 L23: 0.1240 REMARK 3 S TENSOR REMARK 3 S11: -0.7778 S12: -0.0864 S13: 0.7655 REMARK 3 S21: -0.4107 S22: 0.5179 S23: 0.3355 REMARK 3 S31: -0.7733 S32: 0.1892 S33: 0.2366 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 164 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0410 84.3038 72.4258 REMARK 3 T TENSOR REMARK 3 T11: 1.2629 T22: 1.8424 REMARK 3 T33: 1.3395 T12: -0.1192 REMARK 3 T13: -0.0331 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 3.1893 L22: 6.1034 REMARK 3 L33: 2.2463 L12: 0.2230 REMARK 3 L13: -0.2230 L23: 1.7457 REMARK 3 S TENSOR REMARK 3 S11: 0.2563 S12: 1.1603 S13: -0.2013 REMARK 3 S21: -0.6917 S22: -0.2204 S23: -0.5651 REMARK 3 S31: -0.5448 S32: 1.4075 S33: 0.0137 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PC7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17862 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, 1.8M (NH4)2SO4, 0.5MM REMARK 280 GDPNP, 0.15MM PULVOMYCIN, 10MM MGCL2, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.55333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.77667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.77667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 115.55333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 PHE A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 ALA A 42 REMARK 465 ALA A 43 REMARK 465 ARG A 44 REMARK 465 ALA A 45 REMARK 465 PHE A 46 REMARK 465 ASP A 47 REMARK 465 GLN A 48 REMARK 465 ILE A 49 REMARK 465 ASP A 50 REMARK 465 ASN A 51 REMARK 465 ALA A 52 REMARK 465 PRO A 53 REMARK 465 GLU A 54 REMARK 465 GLU A 55 REMARK 465 LYS A 56 REMARK 465 ALA A 57 REMARK 465 ARG A 58 REMARK 465 GLY A 59 REMARK 465 ILE A 60 REMARK 465 MET C 202 REMARK 465 GLN C 203 REMARK 465 SER C 204 REMARK 465 GLY C 205 REMARK 465 LYS C 206 REMARK 465 VAL C 267 REMARK 465 GLU C 268 REMARK 465 THR C 269 REMARK 465 ASP C 270 REMARK 465 PHE C 271 REMARK 465 ALA C 272 REMARK 465 ALA C 273 REMARK 465 GLU C 274 REMARK 465 VAL C 275 REMARK 465 ALA C 276 REMARK 465 ALA C 277 REMARK 465 MET C 278 REMARK 465 SER C 279 REMARK 465 LYS C 280 REMARK 465 GLN C 281 REMARK 465 SER C 282 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 9 93.30 59.26 REMARK 500 ILE A 17 143.75 -170.27 REMARK 500 ASP A 21 47.56 15.97 REMARK 500 TYR A 39 -117.32 -125.96 REMARK 500 SER A 65 99.63 -56.73 REMARK 500 TYR A 87 41.80 -90.33 REMARK 500 LYS A 89 -73.54 -69.90 REMARK 500 VAL A 125 66.38 -104.33 REMARK 500 VAL A 127 84.05 49.87 REMARK 500 TYR A 160 42.80 -91.25 REMARK 500 PRO A 163 71.38 -61.13 REMARK 500 ASP A 181 87.77 57.76 REMARK 500 PRO A 202 48.07 -83.33 REMARK 500 ALA A 205 -50.23 -159.64 REMARK 500 ILE A 206 -141.79 -78.26 REMARK 500 GLU A 243 81.34 -159.92 REMARK 500 ILE A 247 -62.23 21.83 REMARK 500 LYS A 248 -119.98 -101.78 REMARK 500 PHE A 261 -85.09 56.39 REMARK 500 GLU A 267 -105.51 -114.84 REMARK 500 VAL A 274 -161.74 -129.75 REMARK 500 LYS A 282 -163.08 -101.95 REMARK 500 PRO A 295 96.78 -50.81 REMARK 500 THR A 297 -60.71 -129.09 REMARK 500 VAL A 308 104.34 62.54 REMARK 500 SER A 312 -166.71 -113.07 REMARK 500 PHE A 323 -158.41 -131.65 REMARK 500 LYS A 324 38.82 -85.05 REMARK 500 PRO A 328 -151.16 -88.51 REMARK 500 ARG A 333 -113.88 54.01 REMARK 500 THR A 340 -159.61 -103.34 REMARK 500 GLU A 342 91.45 -161.37 REMARK 500 GLU A 345 99.47 -65.64 REMARK 500 GLU A 348 -8.84 -140.94 REMARK 500 PRO A 352 88.49 -51.68 REMARK 500 ASN A 355 70.45 -164.49 REMARK 500 PHE A 374 -166.53 -123.29 REMARK 500 ARG A 381 104.30 -58.57 REMARK 500 ALA A 389 -71.31 -72.68 REMARK 500 LEU A 392 -93.51 -134.86 REMARK 500 GLU C 2 -112.91 -134.47 REMARK 500 ALA C 48 -97.14 50.43 REMARK 500 ALA C 57 -161.92 -102.57 REMARK 500 ASP C 66 80.76 -154.20 REMARK 500 CYS C 77 -134.73 -110.44 REMARK 500 GLN C 78 -99.95 -122.71 REMARK 500 ALA C 86 -8.76 66.40 REMARK 500 ASP C 161 -169.65 -75.15 REMARK 500 ALA C 174 -88.55 -79.50 REMARK 500 GLU C 178 -16.55 -163.68 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 25 OG1 REMARK 620 2 ASP A 80 OD2 70.4 REMARK 620 3 GNP A 401 O1G 107.0 147.8 REMARK 620 4 GNP A 401 O2G 131.1 142.5 64.1 REMARK 620 5 GNP A 401 O1B 58.2 122.9 75.3 73.6 REMARK 620 6 HOH A 501 O 54.5 112.2 53.1 104.6 55.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PUL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PC1 RELATED DB: PDB REMARK 900 CONTAINS THE TU:TS COMPLEX IN THE GDP LIKE CONFORMATION. REMARK 900 RELATED ID: 4PC2 RELATED DB: PDB REMARK 900 RELATED ID: 4PC3 RELATED DB: PDB REMARK 900 RELATED ID: 4PC6 RELATED DB: PDB DBREF 4PC7 A 0 393 UNP P0CE47 EFTU1_ECOLI 1 394 DBREF 4PC7 C 1 282 UNP P0A6P1 EFTS_ECOLI 2 283 SEQRES 1 A 394 MET SER LYS GLU LYS PHE GLU ARG THR LYS PRO HIS VAL SEQRES 2 A 394 ASN VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR SEQRES 3 A 394 THR LEU THR ALA ALA ILE THR THR VAL LEU ALA LYS THR SEQRES 4 A 394 TYR GLY GLY ALA ALA ARG ALA PHE ASP GLN ILE ASP ASN SEQRES 5 A 394 ALA PRO GLU GLU LYS ALA ARG GLY ILE THR ILE ASN THR SEQRES 6 A 394 SER HIS VAL GLU TYR ASP THR PRO THR ARG HIS TYR ALA SEQRES 7 A 394 HIS VAL ASP CYS PRO GLY HIS ALA ASP TYR VAL LYS ASN SEQRES 8 A 394 MET ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU SEQRES 9 A 394 VAL VAL ALA ALA THR ASP GLY PRO MET PRO GLN THR ARG SEQRES 10 A 394 GLU HIS ILE LEU LEU GLY ARG GLN VAL GLY VAL PRO TYR SEQRES 11 A 394 ILE ILE VAL PHE LEU ASN LYS CYS ASP MET VAL ASP ASP SEQRES 12 A 394 GLU GLU LEU LEU GLU LEU VAL GLU MET GLU VAL ARG GLU SEQRES 13 A 394 LEU LEU SER GLN TYR ASP PHE PRO GLY ASP ASP THR PRO SEQRES 14 A 394 ILE VAL ARG GLY SER ALA LEU LYS ALA LEU GLU GLY ASP SEQRES 15 A 394 ALA GLU TRP GLU ALA LYS ILE LEU GLU LEU ALA GLY PHE SEQRES 16 A 394 LEU ASP SER TYR ILE PRO GLU PRO GLU ARG ALA ILE ASP SEQRES 17 A 394 LYS PRO PHE LEU LEU PRO ILE GLU ASP VAL PHE SER ILE SEQRES 18 A 394 SER GLY ARG GLY THR VAL VAL THR GLY ARG VAL GLU ARG SEQRES 19 A 394 GLY ILE ILE LYS VAL GLY GLU GLU VAL GLU ILE VAL GLY SEQRES 20 A 394 ILE LYS GLU THR GLN LYS SER THR CYS THR GLY VAL GLU SEQRES 21 A 394 MET PHE ARG LYS LEU LEU ASP GLU GLY ARG ALA GLY GLU SEQRES 22 A 394 ASN VAL GLY VAL LEU LEU ARG GLY ILE LYS ARG GLU GLU SEQRES 23 A 394 ILE GLU ARG GLY GLN VAL LEU ALA LYS PRO GLY THR ILE SEQRES 24 A 394 LYS PRO HIS THR LYS PHE GLU SER GLU VAL TYR ILE LEU SEQRES 25 A 394 SER LYS ASP GLU GLY GLY ARG HIS THR PRO PHE PHE LYS SEQRES 26 A 394 GLY TYR ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL SEQRES 27 A 394 THR GLY THR ILE GLU LEU PRO GLU GLY VAL GLU MET VAL SEQRES 28 A 394 MET PRO GLY ASP ASN ILE LYS MET VAL VAL THR LEU ILE SEQRES 29 A 394 HIS PRO ILE ALA MET ASP ASP GLY LEU ARG PHE ALA ILE SEQRES 30 A 394 ARG GLU GLY GLY ARG THR VAL GLY ALA GLY VAL VAL ALA SEQRES 31 A 394 LYS VAL LEU GLY SEQRES 1 C 282 ALA GLU ILE THR ALA SER LEU VAL LYS GLU LEU ARG GLU SEQRES 2 C 282 ARG THR GLY ALA GLY MET MET ASP CYS LYS LYS ALA LEU SEQRES 3 C 282 THR GLU ALA ASN GLY ASP ILE GLU LEU ALA ILE GLU ASN SEQRES 4 C 282 MET ARG LYS SER GLY ALA ILE LYS ALA ALA LYS LYS ALA SEQRES 5 C 282 GLY ASN VAL ALA ALA ASP GLY VAL ILE LYS THR LYS ILE SEQRES 6 C 282 ASP GLY ASN TYR GLY ILE ILE LEU GLU VAL ASN CYS GLN SEQRES 7 C 282 THR ASP PHE VAL ALA LYS ASP ALA GLY PHE GLN ALA PHE SEQRES 8 C 282 ALA ASP LYS VAL LEU ASP ALA ALA VAL ALA GLY LYS ILE SEQRES 9 C 282 THR ASP VAL GLU VAL LEU LYS ALA GLN PHE GLU GLU GLU SEQRES 10 C 282 ARG VAL ALA LEU VAL ALA LYS ILE GLY GLU ASN ILE ASN SEQRES 11 C 282 ILE ARG ARG VAL ALA ALA LEU GLU GLY ASP VAL LEU GLY SEQRES 12 C 282 SER TYR GLN HIS GLY ALA ARG ILE GLY VAL LEU VAL ALA SEQRES 13 C 282 ALA LYS GLY ALA ASP GLU GLU LEU VAL LYS HIS ILE ALA SEQRES 14 C 282 MET HIS VAL ALA ALA SER LYS PRO GLU PHE ILE LYS PRO SEQRES 15 C 282 GLU ASP VAL SER ALA GLU VAL VAL GLU LYS GLU TYR GLN SEQRES 16 C 282 VAL GLN LEU ASP ILE ALA MET GLN SER GLY LYS PRO LYS SEQRES 17 C 282 GLU ILE ALA GLU LYS MET VAL GLU GLY ARG MET LYS LYS SEQRES 18 C 282 PHE THR GLY GLU VAL SER LEU THR GLY GLN PRO PHE VAL SEQRES 19 C 282 MET GLU PRO SER LYS THR VAL GLY GLN LEU LEU LYS GLU SEQRES 20 C 282 HIS ASN ALA GLU VAL THR GLY PHE ILE ARG PHE GLU VAL SEQRES 21 C 282 GLY GLU GLY ILE GLU LYS VAL GLU THR ASP PHE ALA ALA SEQRES 22 C 282 GLU VAL ALA ALA MET SER LYS GLN SER HET GNP A 401 32 HET PUL A 402 60 HET MG A 403 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM PUL (1S,2S,3E,5E,7E,10S,11S,12S)-12-[(2R,4E,6E,8Z,10R,12E, HETNAM 2 PUL 14E,16Z,18S,19Z)-10,18-DIHYDROXY-12,16,19-TRIMETHYL- HETNAM 3 PUL 11,22-DIOXOOX ACYCLODOCOSA-4,6,8,12,14,16,19-HEPTAEN- HETNAM 4 PUL 2-YL]-2,11-DIHYDROXY-1,10-DIMETHYL-9-OXOTRIDECA-3,5,7- HETNAM 5 PUL TRIEN-1-YL 6-DEOXY-2,4-DI-O-METHYL-BETA-L- HETNAM 6 PUL GALACTOPYRANOSIDE HETNAM MG MAGNESIUM ION HETSYN PUL PULVOMYCIN FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 PUL C47 H66 O13 FORMUL 5 MG MG 2+ FORMUL 6 HOH *(H2 O) HELIX 1 AA1 GLY A 23 LYS A 37 1 15 HELIX 2 AA2 VAL A 88 MET A 98 1 11 HELIX 3 AA3 MET A 112 VAL A 125 1 14 HELIX 4 AA4 LYS A 136 VAL A 140 5 5 HELIX 5 AA5 ASP A 142 TYR A 160 1 19 HELIX 6 AA6 PRO A 163 THR A 167 5 5 HELIX 7 AA7 ALA A 174 GLU A 179 1 6 HELIX 8 AA8 ASP A 181 TYR A 198 1 18 HELIX 9 AA9 THR C 4 ARG C 14 1 11 HELIX 10 AB1 GLY C 18 ALA C 29 1 12 HELIX 11 AB2 ASP C 32 SER C 43 1 12 HELIX 12 AB3 PHE C 81 ASP C 85 5 5 HELIX 13 AB4 GLY C 87 LYS C 103 1 17 HELIX 14 AB5 ASP C 106 PHE C 114 1 9 HELIX 15 AB6 PHE C 114 GLY C 126 1 13 HELIX 16 AB7 GLU C 163 SER C 175 1 13 HELIX 17 AB8 LYS C 181 VAL C 185 5 5 HELIX 18 AB9 SER C 186 ASP C 199 1 14 HELIX 19 AC1 ALA C 211 SER C 227 1 17 SHEET 1 AA1 6 VAL A 67 ASP A 70 0 SHEET 2 AA1 6 HIS A 75 HIS A 78 -1 O HIS A 78 N VAL A 67 SHEET 3 AA1 6 HIS A 11 GLY A 18 1 N VAL A 14 O ALA A 77 SHEET 4 AA1 6 GLY A 100 ALA A 106 1 O VAL A 104 N ILE A 17 SHEET 5 AA1 6 TYR A 129 ASN A 135 1 O PHE A 133 N LEU A 103 SHEET 6 AA1 6 ILE A 169 VAL A 170 1 O VAL A 170 N LEU A 134 SHEET 1 AA2 2 LEU A 211 PRO A 213 0 SHEET 2 AA2 2 VAL A 291 ALA A 293 -1 O LEU A 292 N LEU A 212 SHEET 1 AA3 5 VAL A 217 ILE A 220 0 SHEET 2 AA3 5 GLY A 224 ARG A 230 -1 O VAL A 226 N PHE A 218 SHEET 3 AA3 5 ASN A 273 LEU A 278 -1 O VAL A 276 N VAL A 227 SHEET 4 AA3 5 CYS A 255 MET A 260 -1 N THR A 256 O LEU A 277 SHEET 5 AA3 5 LYS A 263 LEU A 265 -1 O LYS A 263 N MET A 260 SHEET 1 AA4 3 MET A 358 MET A 368 0 SHEET 2 AA4 3 LYS A 299 SER A 306 -1 N THR A 302 O LEU A 362 SHEET 3 AA4 3 VAL A 388 VAL A 391 -1 O ALA A 389 N GLU A 305 SHEET 1 AA5 3 THR A 335 VAL A 337 0 SHEET 2 AA5 3 GLN A 329 PHE A 332 -1 N PHE A 330 O VAL A 337 SHEET 3 AA5 3 ALA A 375 ARG A 377 -1 O ALA A 375 N TYR A 331 SHEET 1 AA6 3 GLY C 59 LYS C 64 0 SHEET 2 AA6 3 TYR C 69 ASN C 76 -1 O VAL C 75 N VAL C 60 SHEET 3 AA6 3 ASN C 130 GLU C 138 -1 O ASN C 130 N ASN C 76 SHEET 1 AA7 3 VAL C 141 HIS C 147 0 SHEET 2 AA7 3 ILE C 151 ALA C 157 -1 O ALA C 157 N VAL C 141 SHEET 3 AA7 3 VAL C 252 GLU C 259 -1 O PHE C 258 N GLY C 152 LINK OG1 THR A 25 MG MG A 403 1555 1555 2.38 LINK OD2 ASP A 80 MG MG A 403 1555 1555 2.96 LINK O1G GNP A 401 MG MG A 403 1555 1555 2.13 LINK O2G GNP A 401 MG MG A 403 1555 1555 2.62 LINK O1B GNP A 401 MG MG A 403 1555 1555 2.86 LINK MG MG A 403 O HOH A 501 1555 1555 2.78 SITE 1 AC1 18 VAL A 20 ASP A 21 HIS A 22 GLY A 23 SITE 2 AC1 18 LYS A 24 THR A 25 THR A 26 PRO A 82 SITE 3 AC1 18 GLY A 83 ASN A 135 LYS A 136 ASP A 138 SITE 4 AC1 18 MET A 139 SER A 173 ALA A 174 LEU A 175 SITE 5 AC1 18 MG A 403 HOH A 501 SITE 1 AC2 21 ILE A 92 THR A 93 GLN A 97 GLN A 124 SITE 2 AC2 21 VAL A 125 PRO A 213 GLU A 215 THR A 228 SITE 3 AC2 21 GLY A 229 ARG A 230 GLU A 259 PHE A 261 SITE 4 AC2 21 ARG A 262 ASN A 273 VAL A 274 TYR A 331 SITE 5 AC2 21 ARG A 333 THR A 334 ARG A 373 ALA A 375 SITE 6 AC2 21 ARG A 377 SITE 1 AC3 5 THR A 25 ASP A 80 CYS A 81 GNP A 401 SITE 2 AC3 5 HOH A 501 CRYST1 122.820 122.820 173.330 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008142 0.004701 0.000000 0.00000 SCALE2 0.000000 0.009402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005769 0.00000