HEADER SOLUTE-BINDING PROTEIN 14-APR-14 4PC9 TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 ROSENBACTER DENITRIFICANS OCH 114 (RD1_1052, TARGET EFI-510238) WITH TITLE 3 BOUND D-MANNONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: C4-DICARBOXYLATE TRANSPORT SYSTEM, SUBSTRATE-BINDING COMPND 3 PROTEIN, PUTATIVE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSEOBACTER DENITRIFICANS; SOURCE 3 ORGANISM_COMMON: ERYTHROBACTER SP. (STRAIN OCH 114); SOURCE 4 ORGANISM_TAXID: 375451; SOURCE 5 STRAIN: OCH 114; SOURCE 6 GENE: RD1_1052; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 6 27-DEC-23 4PC9 1 REMARK REVDAT 5 25-DEC-19 4PC9 1 REMARK REVDAT 4 27-SEP-17 4PC9 1 REMARK REVDAT 3 26-AUG-15 4PC9 1 REMARK REVDAT 2 25-FEB-15 4PC9 1 JRNL REVDAT 1 21-MAY-14 4PC9 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 138252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 6989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.8792 - 4.0332 0.95 4172 221 0.1435 0.1525 REMARK 3 2 4.0332 - 3.2037 1.00 4359 238 0.1277 0.1244 REMARK 3 3 3.2037 - 2.7995 1.00 4394 229 0.1363 0.1296 REMARK 3 4 2.7995 - 2.5438 1.00 4362 271 0.1317 0.1579 REMARK 3 5 2.5438 - 2.3617 1.00 4355 231 0.1212 0.1450 REMARK 3 6 2.3617 - 2.2225 1.00 4407 238 0.1146 0.1170 REMARK 3 7 2.2225 - 2.1113 1.00 4404 227 0.1112 0.1426 REMARK 3 8 2.1113 - 2.0194 1.00 4403 218 0.1187 0.1411 REMARK 3 9 2.0194 - 1.9417 1.00 4338 284 0.1202 0.1478 REMARK 3 10 1.9417 - 1.8748 1.00 4365 220 0.1257 0.1318 REMARK 3 11 1.8748 - 1.8162 1.00 4406 249 0.1247 0.1514 REMARK 3 12 1.8162 - 1.7643 1.00 4405 220 0.1245 0.1616 REMARK 3 13 1.7643 - 1.7178 1.00 4384 279 0.1221 0.1272 REMARK 3 14 1.7178 - 1.6759 1.00 4351 234 0.1224 0.1307 REMARK 3 15 1.6759 - 1.6378 1.00 4340 226 0.1230 0.1368 REMARK 3 16 1.6378 - 1.6030 1.00 4462 188 0.1258 0.1775 REMARK 3 17 1.6030 - 1.5709 1.00 4365 259 0.1274 0.1493 REMARK 3 18 1.5709 - 1.5413 1.00 4400 219 0.1356 0.1469 REMARK 3 19 1.5413 - 1.5138 1.00 4405 229 0.1352 0.1559 REMARK 3 20 1.5138 - 1.4881 1.00 4348 238 0.1414 0.1774 REMARK 3 21 1.4881 - 1.4641 1.00 4428 224 0.1489 0.1665 REMARK 3 22 1.4641 - 1.4416 1.00 4388 228 0.1527 0.1704 REMARK 3 23 1.4416 - 1.4204 1.00 4346 236 0.1582 0.1637 REMARK 3 24 1.4204 - 1.4004 1.00 4421 216 0.1708 0.2014 REMARK 3 25 1.4004 - 1.3815 1.00 4386 215 0.1709 0.1898 REMARK 3 26 1.3815 - 1.3635 0.99 4345 241 0.1754 0.1695 REMARK 3 27 1.3635 - 1.3465 1.00 4416 212 0.1804 0.1816 REMARK 3 28 1.3465 - 1.3303 0.99 4325 228 0.1948 0.2253 REMARK 3 29 1.3303 - 1.3148 1.00 4394 238 0.2063 0.1914 REMARK 3 30 1.3148 - 1.3000 0.99 4389 233 0.2021 0.2308 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2391 REMARK 3 ANGLE : 1.213 3252 REMARK 3 CHIRALITY : 0.070 371 REMARK 3 PLANARITY : 0.006 429 REMARK 3 DIHEDRAL : 13.755 873 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5468 36.2381 17.7797 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.0915 REMARK 3 T33: 0.0758 T12: -0.0133 REMARK 3 T13: 0.0048 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.1095 L22: 0.9625 REMARK 3 L33: 2.5511 L12: -0.1563 REMARK 3 L13: 1.4949 L23: -0.2048 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: 0.2126 S13: 0.0863 REMARK 3 S21: -0.1602 S22: -0.0036 S23: 0.0968 REMARK 3 S31: -0.0683 S32: 0.0102 S33: -0.0282 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9183 31.0214 15.9363 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.0794 REMARK 3 T33: 0.0505 T12: -0.0083 REMARK 3 T13: 0.0017 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.6194 L22: 0.9424 REMARK 3 L33: 2.6475 L12: 0.2610 REMARK 3 L13: 1.3419 L23: 0.3661 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: 0.1916 S13: 0.0229 REMARK 3 S21: -0.1134 S22: 0.0161 S23: 0.0403 REMARK 3 S31: -0.0395 S32: 0.1080 S33: -0.0342 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5567 36.1968 32.4529 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.0420 REMARK 3 T33: 0.0721 T12: 0.0097 REMARK 3 T13: -0.0061 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.2095 L22: 0.6923 REMARK 3 L33: 1.4279 L12: 0.1189 REMARK 3 L13: -0.0338 L23: -0.0198 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: 0.0199 S13: 0.1404 REMARK 3 S21: -0.0480 S22: -0.0191 S23: 0.0310 REMARK 3 S31: -0.1755 S32: -0.0925 S33: 0.0236 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.2514 18.7588 40.3904 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.0765 REMARK 3 T33: 0.1151 T12: 0.0132 REMARK 3 T13: -0.0168 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.4944 L22: 1.6658 REMARK 3 L33: 2.7073 L12: 0.5755 REMARK 3 L13: 0.5032 L23: 1.0960 REMARK 3 S TENSOR REMARK 3 S11: 0.0766 S12: 0.0347 S13: -0.1871 REMARK 3 S21: 0.0869 S22: -0.0175 S23: -0.0906 REMARK 3 S31: 0.2098 S32: 0.1694 S33: -0.0710 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7133 26.4247 34.9744 REMARK 3 T TENSOR REMARK 3 T11: 0.0418 T22: 0.0208 REMARK 3 T33: 0.0344 T12: -0.0000 REMARK 3 T13: 0.0008 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.0709 L22: 0.6278 REMARK 3 L33: 0.9141 L12: -0.1029 REMARK 3 L13: 0.3742 L23: 0.1162 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: 0.0049 S13: -0.0728 REMARK 3 S21: -0.0188 S22: 0.0008 S23: 0.0771 REMARK 3 S31: 0.0283 S32: -0.0689 S33: -0.0289 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9560 37.8368 51.6267 REMARK 3 T TENSOR REMARK 3 T11: 0.0903 T22: 0.0788 REMARK 3 T33: 0.0762 T12: -0.0080 REMARK 3 T13: 0.0002 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 1.2365 L22: 0.6652 REMARK 3 L33: 1.1655 L12: 0.1659 REMARK 3 L13: 0.2770 L23: 0.0638 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: -0.1958 S13: 0.1400 REMARK 3 S21: 0.1305 S22: -0.0227 S23: -0.0476 REMARK 3 S31: -0.0847 S32: -0.0019 S33: -0.0089 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.4858 37.3839 37.8689 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.0408 REMARK 3 T33: 0.0670 T12: -0.0086 REMARK 3 T13: 0.0015 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.9105 L22: 0.5264 REMARK 3 L33: 0.9893 L12: 0.1874 REMARK 3 L13: 0.4482 L23: 0.2213 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: -0.0193 S13: 0.1641 REMARK 3 S21: -0.0152 S22: 0.0150 S23: -0.0152 REMARK 3 S31: -0.1619 S32: 0.0511 S33: 0.0204 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.7210 25.1458 25.4201 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0457 REMARK 3 T33: 0.0344 T12: 0.0053 REMARK 3 T13: 0.0146 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.7911 L22: 0.8913 REMARK 3 L33: 2.0361 L12: 0.3317 REMARK 3 L13: 1.4374 L23: 0.3943 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: 0.1647 S13: -0.0456 REMARK 3 S21: -0.0253 S22: 0.0112 S23: -0.0230 REMARK 3 S31: 0.0952 S32: 0.1858 S33: -0.0883 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.0668 29.4731 51.5567 REMARK 3 T TENSOR REMARK 3 T11: 0.1019 T22: 0.0585 REMARK 3 T33: 0.0570 T12: -0.0023 REMARK 3 T13: -0.0197 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 3.4359 L22: 1.6973 REMARK 3 L33: 1.7116 L12: 0.7595 REMARK 3 L13: -0.8153 L23: -0.5349 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: -0.1999 S13: -0.1764 REMARK 3 S21: 0.1630 S22: -0.0239 S23: -0.1208 REMARK 3 S31: 0.0469 S32: 0.1235 S33: 0.0376 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4169 20.7991 49.9414 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.1176 REMARK 3 T33: 0.1061 T12: -0.0329 REMARK 3 T13: 0.0053 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 6.8453 L22: 5.1388 REMARK 3 L33: 3.7850 L12: -1.1167 REMARK 3 L13: 0.8343 L23: 0.1197 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: -0.3503 S13: -0.1067 REMARK 3 S21: 0.2372 S22: 0.0344 S23: 0.0717 REMARK 3 S31: 0.0249 S32: -0.2673 S33: 0.0063 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PC9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72237 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 75.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 0.91800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (42.4 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 10 MM D-MANNONATE); RESERVOIR (0.1 M TRIS PH 8.5, REMARK 280 2.4 M DI-AMMONIUM PHOSPHATE); CRYOPROTECTION (80% RESERVOIR + 20% REMARK 280 DIETHYLENE GLYCOL), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.18250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.87600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.66950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.87600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.18250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.66950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 VAL A 14 REMARK 465 ASP A 15 REMARK 465 LEU A 16 REMARK 465 GLY A 17 REMARK 465 THR A 18 REMARK 465 GLU A 19 REMARK 465 ASN A 20 REMARK 465 LEU A 21 REMARK 465 TYR A 22 REMARK 465 PHE A 23 REMARK 465 GLN A 24 REMARK 465 GLU A 325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 591 O HOH A 630 1.84 REMARK 500 O HOH A 591 O HOH A 771 1.95 REMARK 500 O HOH A 728 O HOH A 847 1.96 REMARK 500 O HOH A 895 O HOH A 899 2.05 REMARK 500 O HOH A 516 O HOH A 595 2.05 REMARK 500 O HOH A 586 O HOH A 603 2.06 REMARK 500 O HOH A 899 O HOH A 942 2.06 REMARK 500 O HOH A 508 O HOH A 590 2.07 REMARK 500 NZ LYS A 131 O HOH A 795 2.07 REMARK 500 O HOH A 799 O HOH A 903 2.07 REMARK 500 O HOH A 682 O HOH A 901 2.08 REMARK 500 O HOH A 790 O HOH A 872 2.08 REMARK 500 O HOH A 782 O HOH A 868 2.09 REMARK 500 O HOH A 765 O HOH A 937 2.09 REMARK 500 OD1 ASP A 59 O HOH A 912 2.09 REMARK 500 O HOH A 504 O HOH A 585 2.11 REMARK 500 O HOH A 581 O HOH A 594 2.11 REMARK 500 O HOH A 599 O HOH A 745 2.14 REMARK 500 O HOH A 684 O HOH A 901 2.15 REMARK 500 OE1 GLU A 120 O HOH A 501 2.19 REMARK 500 O HOH A 765 O HOH A 841 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 516 O HOH A 583 2664 2.10 REMARK 500 O HOH A 534 O HOH A 558 4456 2.12 REMARK 500 O HOH A 610 O HOH A 631 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 235 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 107 52.44 -151.51 REMARK 500 PRO A 173 -178.30 -67.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS2 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510238 RELATED DB: TARGETTRACK DBREF 4PC9 A 27 325 UNP Q16BC9 Q16BC9_ROSDO 27 325 SEQADV 4PC9 MSE A 4 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 HIS A 5 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 HIS A 6 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 HIS A 7 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 HIS A 8 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 HIS A 9 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 HIS A 10 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 SER A 11 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 SER A 12 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 GLY A 13 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 VAL A 14 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 ASP A 15 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 LEU A 16 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 GLY A 17 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 THR A 18 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 GLU A 19 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 ASN A 20 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 LEU A 21 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 TYR A 22 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 PHE A 23 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 GLN A 24 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 SER A 25 UNP Q16BC9 EXPRESSION TAG SEQADV 4PC9 MSE A 26 UNP Q16BC9 EXPRESSION TAG SEQRES 1 A 322 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 322 GLY THR GLU ASN LEU TYR PHE GLN SER MSE GLN GLU MSE SEQRES 3 A 322 THR LEU LYS LEU GLY HIS LEU ALA ASN GLU GLN ASN ALA SEQRES 4 A 322 TRP HIS LEU ALA ALA VAL LYS PHE GLY GLU GLU LEU SER SEQRES 5 A 322 THR LEU THR ASP GLY ARG ILE ALA VAL GLU VAL PHE PRO SEQRES 6 A 322 ASN GLU SER LEU GLY LYS GLU ILE ASP LEU ILE ASN GLY SEQRES 7 A 322 MSE GLN LEU GLY THR VAL ASP MSE THR ILE THR GLY GLU SEQRES 8 A 322 SER LEU GLN ASN TRP ALA PRO MSE ALA ALA LEU LEU ALA SEQRES 9 A 322 VAL PRO TYR ALA TYR LYS SER LEU GLU HIS MSE ASP GLU SEQRES 10 A 322 VAL ALA SER GLY GLU ILE GLY GLU GLN ILE LYS GLN GLN SEQRES 11 A 322 ILE ILE GLU LYS ALA GLN VAL ARG PRO ILE ALA PHE PHE SEQRES 12 A 322 ALA ARG GLY PRO ARG ASN LEU THR SER GLN ARG PRO ILE SEQRES 13 A 322 THR SER PRO ALA ASP LEU ASP GLY MSE LYS MSE ARG VAL SEQRES 14 A 322 PRO ASN VAL PRO LEU PHE VAL ASP VAL TRP SER ALA LEU SEQRES 15 A 322 GLY ALA SER PRO THR PRO MSE ALA PHE SER GLU VAL PHE SEQRES 16 A 322 THR SER LEU GLN ASN GLY VAL ILE ASP GLY GLN GLU ASN SEQRES 17 A 322 PRO LEU ALA LEU ILE ARG SER ALA ASN PHE ASN GLU VAL SEQRES 18 A 322 GLN GLY TYR VAL ASN GLN THR GLU HIS VAL ARG SER TRP SEQRES 19 A 322 ILE TYR LEU THR ILE ALA GLU SER THR TRP ALA LYS LEU SEQRES 20 A 322 SER GLU ASP ASP GLN ASN ALA VAL MSE GLN ALA ALA ALA SEQRES 21 A 322 THR ALA GLN GLU TYR GLU ARG GLY LEU LEU LEU GLU SER SEQRES 22 A 322 LEU ALA GLU ASP ARG GLY TYR LEU GLU SER LYS GLY MSE SEQRES 23 A 322 THR PHE VAL GLU VAL ASP GLY ALA ALA PHE GLN ALA ALA SEQRES 24 A 322 ALA LYS ASP ALA VAL LEU ALA ASN VAL SER GLU GLU ILE SEQRES 25 A 322 ARG PRO ILE VAL GLU SER LEU PHE SER GLU MODRES 4PC9 MSE A 29 MET MODIFIED RESIDUE MODRES 4PC9 MSE A 82 MET MODIFIED RESIDUE MODRES 4PC9 MSE A 89 MET MODIFIED RESIDUE MODRES 4PC9 MSE A 102 MET MODIFIED RESIDUE MODRES 4PC9 MSE A 118 MET MODIFIED RESIDUE MODRES 4PC9 MSE A 168 MET MODIFIED RESIDUE MODRES 4PC9 MSE A 170 MET MODIFIED RESIDUE MODRES 4PC9 MSE A 192 MET MODIFIED RESIDUE MODRES 4PC9 MSE A 259 MET MODIFIED RESIDUE MODRES 4PC9 MSE A 289 MET MODIFIED RESIDUE HET MSE A 26 17 HET MSE A 29 17 HET MSE A 82 17 HET MSE A 89 17 HET MSE A 102 17 HET MSE A 118 17 HET MSE A 168 10 HET MSE A 170 17 HET MSE A 192 17 HET MSE A 259 17 HET MSE A 289 17 HET CS2 A 401 24 HETNAM MSE SELENOMETHIONINE HETNAM CS2 D-MANNONIC ACID HETSYN CS2 D-MANNONATE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 CS2 C6 H12 O7 FORMUL 3 HOH *445(H2 O) HELIX 1 AA1 ASN A 41 THR A 58 1 18 HELIX 2 AA2 LYS A 74 GLY A 85 1 12 HELIX 3 AA3 GLY A 93 TRP A 99 5 7 HELIX 4 AA4 ALA A 100 VAL A 108 5 9 HELIX 5 AA5 SER A 114 GLY A 124 1 11 HELIX 6 AA6 GLY A 124 GLN A 139 1 16 HELIX 7 AA7 SER A 161 LEU A 165 5 5 HELIX 8 AA8 VAL A 175 GLY A 186 1 12 HELIX 9 AA9 ALA A 193 SER A 195 5 3 HELIX 10 AB1 GLU A 196 ASN A 203 1 8 HELIX 11 AB2 LEU A 213 ALA A 219 1 7 HELIX 12 AB3 ASN A 220 VAL A 224 5 5 HELIX 13 AB4 GLU A 244 ALA A 248 1 5 HELIX 14 AB5 SER A 251 LYS A 287 1 37 HELIX 15 AB6 ASP A 295 VAL A 311 1 17 HELIX 16 AB7 ILE A 315 SER A 324 1 10 SHEET 1 AA1 5 ILE A 62 PHE A 67 0 SHEET 2 AA1 5 MSE A 29 GLY A 34 1 N LEU A 31 O ALA A 63 SHEET 3 AA1 5 MSE A 89 THR A 92 1 O MSE A 89 N GLY A 34 SHEET 4 AA1 5 TRP A 237 ALA A 243 -1 O THR A 241 N THR A 90 SHEET 5 AA1 5 VAL A 140 ALA A 147 -1 N ARG A 141 O ILE A 242 SHEET 1 AA2 4 GLN A 209 PRO A 212 0 SHEET 2 AA2 4 ARG A 151 SER A 155 -1 N THR A 154 O GLN A 209 SHEET 3 AA2 4 TYR A 227 VAL A 234 -1 O ASN A 229 N LEU A 153 SHEET 4 AA2 4 THR A 290 VAL A 292 1 O VAL A 292 N GLN A 230 SHEET 1 AA3 2 LYS A 169 VAL A 172 0 SHEET 2 AA3 2 SER A 188 PRO A 191 1 O THR A 190 N MSE A 170 LINK C SER A 25 N MSE A 26 1555 1555 1.33 LINK C MSE A 26 N GLN A 27 1555 1555 1.32 LINK C GLU A 28 N MSE A 29 1555 1555 1.33 LINK C MSE A 29 N THR A 30 1555 1555 1.33 LINK C GLY A 81 N MSE A 82 1555 1555 1.32 LINK C MSE A 82 N GLN A 83 1555 1555 1.33 LINK C ASP A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N THR A 90 1555 1555 1.33 LINK C PRO A 101 N MSE A 102 1555 1555 1.32 LINK C MSE A 102 N ALA A 103 1555 1555 1.32 LINK C HIS A 117 N MSE A 118 1555 1555 1.32 LINK C MSE A 118 N ASP A 119 1555 1555 1.33 LINK C GLY A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N LYS A 169 1555 1555 1.33 LINK C LYS A 169 N MSE A 170 1555 1555 1.32 LINK C MSE A 170 N ARG A 171 1555 1555 1.32 LINK C PRO A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N ALA A 193 1555 1555 1.33 LINK C VAL A 258 N MSE A 259 1555 1555 1.33 LINK C MSE A 259 N AGLN A 260 1555 1555 1.33 LINK C MSE A 259 N BGLN A 260 1555 1555 1.32 LINK C GLY A 288 N MSE A 289 1555 1555 1.33 LINK C MSE A 289 N THR A 290 1555 1555 1.33 SITE 1 AC1 15 GLU A 75 GLY A 93 GLU A 94 SER A 95 SITE 2 AC1 15 ARG A 148 ARG A 151 ARG A 171 PRO A 173 SITE 3 AC1 15 VAL A 175 PHE A 194 ASN A 211 LEU A 215 SITE 4 AC1 15 ILE A 238 HOH A 662 HOH A 668 CRYST1 52.365 73.339 75.752 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019097 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013201 0.00000