data_4PCJ # _entry.id 4PCJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4PCJ pdb_00004pcj 10.2210/pdb4pcj/pdb WWPDB D_1000201143 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details '4FNJ is the native structure with no pseudouridine substitutions.' _pdbx_database_related.db_id 4FNJ _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 4PCJ _pdbx_database_status.recvd_initial_deposition_date 2014-04-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.methods_development_category . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Coonrod, L.A.' 1 'Reister, E.E.' 2 'Berglund, J.A.' 3 # _citation.abstract . _citation.abstract_id_CAS . _citation.book_id_ISBN . _citation.book_publisher ? _citation.book_publisher_city . _citation.book_title . _citation.coordinate_linkage . _citation.country UK _citation.database_id_Medline . _citation.details . _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full . _citation.journal_issue . _citation.journal_volume 42 _citation.language . _citation.page_first 12768 _citation.page_last 12778 _citation.title ;Modifications to toxic CUG RNAs induce structural stability, rescue mis-splicing in a myotonic dystrophy cell model and reduce toxicity in a myotonic dystrophy zebrafish model. ; _citation.year 2014 _citation.database_id_CSD . _citation.pdbx_database_id_DOI 10.1093/nar/gku941 _citation.pdbx_database_id_PubMed 25303993 _citation.unpublished_flag . # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'deLorimier, E.' 1 ? primary 'Coonrod, L.A.' 2 ? primary 'Copperman, J.' 3 ? primary 'Taber, A.' 4 ? primary 'Reister, E.E.' 5 ? primary 'Sharma, K.' 6 ? primary 'Todd, P.K.' 7 ? primary 'Guenza, M.G.' 8 ? primary 'Berglund, J.A.' 9 ? # _cell.entry_id 4PCJ _cell.length_a 69.705 _cell.length_b 69.705 _cell.length_c 67.797 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PCJ _symmetry.cell_setting . _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M . # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "trCUG-3('5)" 11253.693 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 water nat water 18.015 65 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CUGC(PSU)GGCUAAGGCAUGAAAGUGCUAUGCCUGCUG' _entity_poly.pdbx_seq_one_letter_code_can CUGCUGGCUAAGGCAUGAAAGUGCUAUGCCUGCUG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 G n 1 4 C n 1 5 PSU n 1 6 G n 1 7 G n 1 8 C n 1 9 U n 1 10 A n 1 11 A n 1 12 G n 1 13 G n 1 14 C n 1 15 A n 1 16 U n 1 17 G n 1 18 A n 1 19 A n 1 20 A n 1 21 G n 1 22 U n 1 23 G n 1 24 C n 1 25 U n 1 26 A n 1 27 U n 1 28 G n 1 29 C n 1 30 C n 1 31 U n 1 32 G n 1 33 C n 1 34 U n 1 35 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 35 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4PCJ _struct_ref.pdbx_db_accession 4PCJ _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4PCJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 35 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4PCJ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 35 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 35 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu . _exptl.absorpt_correction_T_max . _exptl.absorpt_correction_T_min . _exptl.absorpt_correction_type . _exptl.absorpt_process_details . _exptl.entry_id 4PCJ _exptl.crystals_number 1 _exptl.details . _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details . # _exptl_crystal.colour . _exptl_crystal.density_diffrn . _exptl_crystal.density_Matthews 2.82 _exptl_crystal.density_method . _exptl_crystal.density_percent_sol 56.33 _exptl_crystal.description . _exptl_crystal.F_000 . _exptl_crystal.id 1 _exptl_crystal.preparation . _exptl_crystal.size_max . _exptl_crystal.size_mid . _exptl_crystal.size_min . _exptl_crystal.size_rad . _exptl_crystal.colour_lustre . _exptl_crystal.colour_modifier . _exptl_crystal.colour_primary . _exptl_crystal.density_meas . _exptl_crystal.density_meas_esd . _exptl_crystal.density_meas_gt . _exptl_crystal.density_meas_lt . _exptl_crystal.density_meas_temp . _exptl_crystal.density_meas_temp_esd . _exptl_crystal.density_meas_temp_gt . _exptl_crystal.density_meas_temp_lt . _exptl_crystal.pdbx_crystal_image_url . _exptl_crystal.pdbx_crystal_image_format . _exptl_crystal.pdbx_mosaicity . _exptl_crystal.pdbx_mosaicity_esd . # _exptl_crystal_grow.apparatus . _exptl_crystal_grow.atmosphere . _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details . _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref . _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure . _exptl_crystal_grow.pressure_esd . _exptl_crystal_grow.seeding . _exptl_crystal_grow.seeding_ref . _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details . _exptl_crystal_grow.temp_esd . _exptl_crystal_grow.time . _exptl_crystal_grow.pdbx_details 'MgSO4, Tris (pH 8.5), 1,6-hexanediol' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.ambient_environment . _diffrn.ambient_temp 85 _diffrn.ambient_temp_details . _diffrn.ambient_temp_esd . _diffrn.crystal_id 1 _diffrn.crystal_support . _diffrn.crystal_treatment . _diffrn.details . _diffrn.id 1 _diffrn.ambient_pressure . _diffrn.ambient_pressure_esd . _diffrn.ambient_pressure_gt . _diffrn.ambient_pressure_lt . _diffrn.ambient_temp_gt . _diffrn.ambient_temp_lt . # _diffrn_detector.details . _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean . _diffrn_detector.dtime . _diffrn_detector.pdbx_frames_total . _diffrn_detector.pdbx_collection_time_total . _diffrn_detector.pdbx_collection_date 2012-11-24 # _diffrn_radiation.collimation . _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge . _diffrn_radiation.inhomogeneity . _diffrn_radiation.monochromator . _diffrn_radiation.polarisn_norm . _diffrn_radiation.polarisn_ratio . _diffrn_radiation.probe . _diffrn_radiation.type . _diffrn_radiation.xray_symbol . _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list . _diffrn_radiation.pdbx_wavelength . _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer . _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current . _diffrn_source.details . _diffrn_source.diffrn_id 1 _diffrn_source.power . _diffrn_source.size . _diffrn_source.source SYNCHROTRON _diffrn_source.target . _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage . _diffrn_source.take-off_angle . _diffrn_source.pdbx_wavelength_list 0.97915 _diffrn_source.pdbx_wavelength . _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate . _reflns.entry_id 4PCJ _reflns.data_reduction_details . _reflns.data_reduction_method . _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 22.60 _reflns.details . _reflns.limit_h_max . _reflns.limit_h_min . _reflns.limit_k_max . _reflns.limit_k_min . _reflns.limit_l_max . _reflns.limit_l_min . _reflns.number_all . _reflns.number_obs 9697 _reflns.observed_criterion . _reflns.observed_criterion_F_max . _reflns.observed_criterion_F_min . _reflns.observed_criterion_I_max . _reflns.observed_criterion_I_min . _reflns.observed_criterion_sigma_F . _reflns.observed_criterion_sigma_I . _reflns.percent_possible_obs 96.9 _reflns.R_free_details . _reflns.Rmerge_F_all . _reflns.Rmerge_F_obs . _reflns.Friedel_coverage . _reflns.number_gt . _reflns.threshold_expression . _reflns.pdbx_redundancy 5.0 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rmerge_I_all . _reflns.pdbx_Rsym_value . _reflns.pdbx_netI_over_av_sigmaI . _reflns.pdbx_netI_over_sigmaI 22.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 . _reflns.pdbx_res_netI_over_sigmaI_2 . _reflns.pdbx_chi_squared . _reflns.pdbx_scaling_rejects . _reflns.pdbx_d_res_high_opt . _reflns.pdbx_d_res_low_opt . _reflns.pdbx_d_res_opt_method . _reflns.phase_calculation_details . _reflns.pdbx_Rrim_I_all . _reflns.pdbx_Rpim_I_all . _reflns.pdbx_d_opt . _reflns.pdbx_number_measured_all . _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.meanI_over_sigI_all . _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.number_measured_all . _reflns_shell.number_measured_obs . _reflns_shell.number_possible . _reflns_shell.number_unique_all . _reflns_shell.number_unique_obs . _reflns_shell.percent_possible_all 89.6 _reflns_shell.percent_possible_obs . _reflns_shell.Rmerge_F_all . _reflns_shell.Rmerge_F_obs . _reflns_shell.Rmerge_I_all . _reflns_shell.Rmerge_I_obs 0.44 _reflns_shell.meanI_over_sigI_gt . _reflns_shell.meanI_over_uI_all . _reflns_shell.meanI_over_uI_gt . _reflns_shell.number_measured_gt . _reflns_shell.number_unique_gt . _reflns_shell.percent_possible_gt . _reflns_shell.Rmerge_F_gt . _reflns_shell.Rmerge_I_gt . _reflns_shell.pdbx_redundancy . _reflns_shell.pdbx_Rsym_value . _reflns_shell.pdbx_chi_squared . _reflns_shell.pdbx_netI_over_sigmaI_all . _reflns_shell.pdbx_netI_over_sigmaI_obs . _reflns_shell.pdbx_Rrim_I_all . _reflns_shell.pdbx_Rpim_I_all . _reflns_shell.pdbx_rejects . _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.aniso_B[1][1] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.00 _refine.B_iso_max . _refine.B_iso_mean 49.318 _refine.B_iso_min . _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max . _refine.diff_density_max_esd . _refine.diff_density_min . _refine.diff_density_min_esd . _refine.diff_density_rms . _refine.diff_density_rms_esd . _refine.entry_id 4PCJ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details . _refine.ls_abs_structure_Flack . _refine.ls_abs_structure_Flack_esd . _refine.ls_abs_structure_Rogers . _refine.ls_abs_structure_Rogers_esd . _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 22.60 _refine.ls_extinction_coef . _refine.ls_extinction_coef_esd . _refine.ls_extinction_expression . _refine.ls_extinction_method . _refine.ls_goodness_of_fit_all . _refine.ls_goodness_of_fit_all_esd . _refine.ls_goodness_of_fit_obs . _refine.ls_goodness_of_fit_obs_esd . _refine.ls_hydrogen_treatment . _refine.ls_matrix_type . _refine.ls_number_constraints . _refine.ls_number_parameters . _refine.ls_number_reflns_all . _refine.ls_number_reflns_obs 8941 _refine.ls_number_reflns_R_free 452 _refine.ls_number_reflns_R_work . _refine.ls_number_restraints . _refine.ls_percent_reflns_obs 96.89 _refine.ls_percent_reflns_R_free 4.8 _refine.ls_R_factor_all . _refine.ls_R_factor_obs 0.19963 _refine.ls_R_factor_R_free 0.26770 _refine.ls_R_factor_R_free_error . _refine.ls_R_factor_R_free_error_details . _refine.ls_R_factor_R_work 0.19647 _refine.ls_R_Fsqd_factor_obs . _refine.ls_R_I_factor_obs . _refine.ls_redundancy_reflns_all . _refine.ls_redundancy_reflns_obs . _refine.ls_restrained_S_all . _refine.ls_restrained_S_obs . _refine.ls_shift_over_esd_max . _refine.ls_shift_over_esd_mean . _refine.ls_structure_factor_coef . _refine.ls_weighting_details . _refine.ls_weighting_scheme . _refine.ls_wR_factor_all . _refine.ls_wR_factor_obs . _refine.ls_wR_factor_R_free . _refine.ls_wR_factor_R_work . _refine.occupancy_max . _refine.occupancy_min . _refine.overall_SU_B 4.417 _refine.overall_SU_ML 0.121 _refine.overall_SU_R_Cruickshank_DPI . _refine.overall_SU_R_free . _refine.overall_FOM_free_R_set . _refine.overall_FOM_work_R_set . _refine.solvent_model_details MASK _refine.solvent_model_param_bsol . _refine.solvent_model_param_ksol . _refine.ls_R_factor_gt . _refine.ls_goodness_of_fit_gt . _refine.ls_goodness_of_fit_ref . _refine.ls_shift_over_su_max . _refine.ls_shift_over_su_max_lt . _refine.ls_shift_over_su_mean . _refine.ls_shift_over_su_mean_lt . _refine.pdbx_ls_sigma_I . _refine.pdbx_ls_sigma_F . _refine.pdbx_ls_sigma_Fsqd . _refine.pdbx_data_cutoff_high_absF . _refine.pdbx_data_cutoff_high_rms_absF . _refine.pdbx_data_cutoff_low_absF . _refine.pdbx_isotropic_thermal_model . _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4FNJ _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case . _refine.pdbx_overall_ESU_R 0.145 _refine.pdbx_overall_ESU_R_Free 0.158 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R . _refine.pdbx_density_correlation . _refine.pdbx_pd_number_of_powder_patterns . _refine.pdbx_pd_number_of_points . _refine.pdbx_pd_meas_number_of_points . _refine.pdbx_pd_proc_ls_prof_R_factor . _refine.pdbx_pd_proc_ls_prof_wR_factor . _refine.pdbx_pd_Marquardt_correlation_coeff . _refine.pdbx_pd_Fsqrd_R_factor . _refine.pdbx_pd_ls_matrix_band_width . _refine.pdbx_overall_phase_error . _refine.pdbx_overall_SU_R_free_Cruickshank_DPI . _refine.pdbx_overall_SU_R_free_Blow_DPI . _refine.pdbx_overall_SU_R_Blow_DPI . _refine.pdbx_TLS_residual_ADP_flag . _refine.pdbx_diffrn_id 1 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 744 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 65 _refine_hist.number_atoms_total 814 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 22.60 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' . 0.010 0.011 831 . r_bond_refined_d . . 'X-RAY DIFFRACTION' . 0.002 0.020 342 . r_bond_other_d . . 'X-RAY DIFFRACTION' . 1.926 1.315 1294 . r_angle_refined_deg . . 'X-RAY DIFFRACTION' . 1.697 3.000 832 . r_angle_other_deg . . 'X-RAY DIFFRACTION' . . . . . r_dihedral_angle_1_deg . . 'X-RAY DIFFRACTION' . . . . . r_dihedral_angle_2_deg . . 'X-RAY DIFFRACTION' . . . . . r_dihedral_angle_3_deg . . 'X-RAY DIFFRACTION' . . . . . r_dihedral_angle_4_deg . . 'X-RAY DIFFRACTION' . 0.101 0.200 140 . r_chiral_restr . . 'X-RAY DIFFRACTION' . 0.022 0.020 412 . r_gen_planes_refined . . 'X-RAY DIFFRACTION' . 0.003 0.020 181 . r_gen_planes_other . . 'X-RAY DIFFRACTION' . . . . . r_nbd_refined . . 'X-RAY DIFFRACTION' . . . . . r_nbd_other . . 'X-RAY DIFFRACTION' . . . . . r_nbtor_refined . . 'X-RAY DIFFRACTION' . . . . . r_nbtor_other . . 'X-RAY DIFFRACTION' . . . . . r_xyhbond_nbd_refined . . 'X-RAY DIFFRACTION' . . . . . r_xyhbond_nbd_other . . 'X-RAY DIFFRACTION' . . . . . r_metal_ion_refined . . 'X-RAY DIFFRACTION' . . . . . r_metal_ion_other . . 'X-RAY DIFFRACTION' . . . . . r_symmetry_vdw_refined . . 'X-RAY DIFFRACTION' . . . . . r_symmetry_vdw_other . . 'X-RAY DIFFRACTION' . . . . . r_symmetry_hbond_refined . . 'X-RAY DIFFRACTION' . . . . . r_symmetry_hbond_other . . 'X-RAY DIFFRACTION' . . . . . r_symmetry_metal_ion_refined . . 'X-RAY DIFFRACTION' . . . . . r_symmetry_metal_ion_other . . 'X-RAY DIFFRACTION' . . . . . r_mcbond_it . . 'X-RAY DIFFRACTION' . . . . . r_mcbond_other . . 'X-RAY DIFFRACTION' . . . . . r_mcangle_it . . 'X-RAY DIFFRACTION' . . . . . r_mcangle_other . . 'X-RAY DIFFRACTION' . . . . . r_scbond_it . . 'X-RAY DIFFRACTION' . . . . . r_scbond_other . . 'X-RAY DIFFRACTION' . . . . . r_scangle_it . . 'X-RAY DIFFRACTION' . . . . . r_scangle_other . . 'X-RAY DIFFRACTION' . . . . . r_long_range_B_refined . . 'X-RAY DIFFRACTION' . . . . . r_long_range_B_other . . 'X-RAY DIFFRACTION' . . . . . r_rigid_bond_restr . . 'X-RAY DIFFRACTION' . . . . . r_sphericity_free . . 'X-RAY DIFFRACTION' . . . . . r_sphericity_bonded . . # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.number_reflns_all . _refine_ls_shell.number_reflns_obs . _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_R_work 606 _refine_ls_shell.percent_reflns_obs 89.61 _refine_ls_shell.percent_reflns_R_free . _refine_ls_shell.R_factor_all . _refine_ls_shell.R_factor_obs . _refine_ls_shell.R_factor_R_free 0.448 _refine_ls_shell.R_factor_R_free_error . _refine_ls_shell.R_factor_R_work 0.325 _refine_ls_shell.redundancy_reflns_all . _refine_ls_shell.redundancy_reflns_obs . _refine_ls_shell.wR_factor_all . _refine_ls_shell.wR_factor_obs . _refine_ls_shell.wR_factor_R_free . _refine_ls_shell.wR_factor_R_work . _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error . # _struct.entry_id 4PCJ _struct.title 'Modifications to toxic CUG RNAs induce structural stability and rescue mis-splicing in Myotonic Dystrophy' _struct.pdbx_model_details . _struct.pdbx_formula_weight . _struct.pdbx_formula_weight_method . _struct.pdbx_model_type_details . _struct.pdbx_CASP_flag . # _struct_keywords.entry_id 4PCJ _struct_keywords.text 'pseudoU, CUG repeats, tetraloop receptor, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 4 "O3'" ? ? ? 1_555 A PSU 5 P ? ? A C 4 A PSU 5 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale2 covale both ? A PSU 5 "O3'" ? ? ? 1_555 A G 6 P ? ? A PSU 5 A G 6 1_555 ? ? ? ? ? ? ? 1.591 ? ? metalc1 metalc ? ? A C 8 O2 ? ? ? 1_555 E MG . MG ? ? A C 8 A MG 104 1_555 ? ? ? ? ? ? ? 2.997 ? ? metalc2 metalc ? ? A A 10 "O2'" ? ? ? 1_555 B MG . MG ? ? A A 10 A MG 101 1_555 ? ? ? ? ? ? ? 2.415 ? ? metalc3 metalc ? ? A G 12 O6 ? ? ? 1_555 B MG . MG ? ? A G 12 A MG 101 1_555 ? ? ? ? ? ? ? 2.688 ? ? metalc4 metalc ? ? A A 20 "O2'" ? ? ? 1_555 E MG . MG ? ? A A 20 A MG 104 9_554 ? ? ? ? ? ? ? 2.852 ? ? metalc5 metalc ? ? A C 29 "O2'" ? ? ? 1_555 E MG . MG ? ? A C 29 A MG 104 1_555 ? ? ? ? ? ? ? 2.929 ? ? metalc6 metalc ? ? A C 29 O2 ? ? ? 1_555 E MG . MG ? ? A C 29 A MG 104 1_555 ? ? ? ? ? ? ? 2.715 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 223 6_554 ? ? ? ? ? ? ? 1.968 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 237 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 238 1_555 ? ? ? ? ? ? ? 2.463 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 257 1_555 ? ? ? ? ? ? ? 2.788 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 245 1_555 ? ? ? ? ? ? ? 2.408 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 248 1_555 ? ? ? ? ? ? ? 2.252 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 249 1_555 ? ? ? ? ? ? ? 2.298 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 254 1_555 ? ? ? ? ? ? ? 1.964 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 104 A HOH 221 1_555 ? ? ? ? ? ? ? 2.770 ? ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 105 A HOH 246 1_555 ? ? ? ? ? ? ? 1.974 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 105 A HOH 251 1_555 ? ? ? ? ? ? ? 2.197 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 105 A HOH 261 1_555 ? ? ? ? ? ? ? 2.164 ? ? metalc19 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 105 A HOH 265 1_555 ? ? ? ? ? ? ? 2.210 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 1 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 1 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 1 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A U 34 O2 ? ? A U 2 A U 34 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A U 34 N3 ? ? A U 2 A U 34 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 3 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 3 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 3 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 4 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 4 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 4 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A PSU 5 O2 ? ? ? 1_555 A U 31 N3 ? ? A PSU 5 A U 31 1_555 ? ? ? ? ? ? 'PSU-U MISPAIR' ? ? ? hydrog13 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 6 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 6 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 6 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 7 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 7 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 7 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 8 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 8 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 8 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 26 N7 ? ? A U 9 A A 26 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog23 hydrog ? ? A U 9 O2 ? ? ? 1_555 A A 26 N6 ? ? A U 9 A A 26 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog24 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 27 N3 ? ? A A 11 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 27 O4 ? ? A A 11 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 N1 ? ? ? 1_555 A U 25 O2 ? ? A G 12 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A G 12 O6 ? ? ? 1_555 A U 25 N3 ? ? A G 12 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? A G 12 N2 ? ? ? 1_555 A U 27 O4 ? ? A G 12 A U 27 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog29 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 24 N3 ? ? A G 13 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 24 O2 ? ? A G 13 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 24 N4 ? ? A G 13 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 14 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 14 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 14 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 22 N3 ? ? A A 15 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 22 O4 ? ? A A 15 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 16 N3 ? ? ? 1_555 A G 21 O6 ? ? A U 16 A G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog38 hydrog ? ? A U 16 O2 ? ? ? 1_555 A G 21 N1 ? ? A U 16 A G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog39 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 20 N7 ? ? A G 17 A A 20 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 4 'binding site for residue MG A 101' AC2 Software A MG 102 ? 4 'binding site for residue MG A 102' AC3 Software A MG 103 ? 4 'binding site for residue MG A 103' AC4 Software A MG 104 ? 5 'binding site for residue MG A 104' AC5 Software A MG 105 ? 4 'binding site for residue MG A 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 A A 10 ? A A 10 . ? 1_555 ? 2 AC1 4 A A 11 ? A A 11 . ? 1_555 ? 3 AC1 4 G A 12 ? G A 12 . ? 1_555 ? 4 AC1 4 G A 13 ? G A 13 . ? 1_555 ? 5 AC2 4 HOH G . ? HOH A 223 . ? 6_554 ? 6 AC2 4 HOH G . ? HOH A 237 . ? 1_555 ? 7 AC2 4 HOH G . ? HOH A 238 . ? 1_555 ? 8 AC2 4 HOH G . ? HOH A 257 . ? 1_555 ? 9 AC3 4 HOH G . ? HOH A 245 . ? 1_555 ? 10 AC3 4 HOH G . ? HOH A 248 . ? 1_555 ? 11 AC3 4 HOH G . ? HOH A 249 . ? 1_555 ? 12 AC3 4 HOH G . ? HOH A 254 . ? 1_555 ? 13 AC4 5 C A 8 ? C A 8 . ? 1_555 ? 14 AC4 5 A A 20 ? A A 20 . ? 5_555 ? 15 AC4 5 G A 28 ? G A 28 . ? 1_555 ? 16 AC4 5 C A 29 ? C A 29 . ? 1_555 ? 17 AC4 5 HOH G . ? HOH A 221 . ? 1_555 ? 18 AC5 4 HOH G . ? HOH A 246 . ? 1_555 ? 19 AC5 4 HOH G . ? HOH A 251 . ? 1_555 ? 20 AC5 4 HOH G . ? HOH A 261 . ? 1_555 ? 21 AC5 4 HOH G . ? HOH A 265 . ? 1_555 ? # _atom_sites.entry_id 4PCJ _atom_sites.fract_transf_matrix[1][1] 0.014346 _atom_sites.fract_transf_matrix[1][2] 0.008283 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016566 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014750 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 PSU 5 5 5 PSU PSU A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 A 19 19 19 A A A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 C 24 24 24 C C A . n A 1 25 U 25 25 25 U U A . n A 1 26 A 26 26 26 A A A . n A 1 27 U 27 27 27 U U A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 C 30 30 30 C C A . n A 1 31 U 31 31 31 U U A . n A 1 32 G 32 32 32 G G A . n A 1 33 C 33 33 33 C C A . n A 1 34 U 34 34 34 U U A . n A 1 35 G 35 35 35 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 1 MG MG A . C 2 MG 1 102 1 MG MG A . D 2 MG 1 103 1 MG MG A . E 2 MG 1 104 1 MG MG A . F 2 MG 1 105 1 MG MG A . G 3 HOH 1 201 110 HOH HOH A . G 3 HOH 2 202 109 HOH HOH A . G 3 HOH 3 203 112 HOH HOH A . G 3 HOH 4 204 2 HOH HOH A . G 3 HOH 5 205 14 HOH HOH A . G 3 HOH 6 206 88 HOH HOH A . G 3 HOH 7 207 5 HOH HOH A . G 3 HOH 8 208 13 HOH HOH A . G 3 HOH 9 209 16 HOH HOH A . G 3 HOH 10 210 4 HOH HOH A . G 3 HOH 11 211 94 HOH HOH A . G 3 HOH 12 212 10 HOH HOH A . G 3 HOH 13 213 35 HOH HOH A . G 3 HOH 14 214 42 HOH HOH A . G 3 HOH 15 215 28 HOH HOH A . G 3 HOH 16 216 8 HOH HOH A . G 3 HOH 17 217 65 HOH HOH A . G 3 HOH 18 218 105 HOH HOH A . G 3 HOH 19 219 92 HOH HOH A . G 3 HOH 20 220 40 HOH HOH A . G 3 HOH 21 221 15 HOH HOH A . G 3 HOH 22 222 23 HOH HOH A . G 3 HOH 23 223 99 HOH HOH A . G 3 HOH 24 224 72 HOH HOH A . G 3 HOH 25 225 27 HOH HOH A . G 3 HOH 26 226 3 HOH HOH A . G 3 HOH 27 227 6 HOH HOH A . G 3 HOH 28 228 9 HOH HOH A . G 3 HOH 29 229 12 HOH HOH A . G 3 HOH 30 230 18 HOH HOH A . G 3 HOH 31 231 19 HOH HOH A . G 3 HOH 32 232 21 HOH HOH A . G 3 HOH 33 233 22 HOH HOH A . G 3 HOH 34 234 29 HOH HOH A . G 3 HOH 35 235 30 HOH HOH A . G 3 HOH 36 236 33 HOH HOH A . G 3 HOH 37 237 38 HOH HOH A . G 3 HOH 38 238 39 HOH HOH A . G 3 HOH 39 239 43 HOH HOH A . G 3 HOH 40 240 44 HOH HOH A . G 3 HOH 41 241 47 HOH HOH A . G 3 HOH 42 242 54 HOH HOH A . G 3 HOH 43 243 55 HOH HOH A . G 3 HOH 44 244 59 HOH HOH A . G 3 HOH 45 245 60 HOH HOH A . G 3 HOH 46 246 63 HOH HOH A . G 3 HOH 47 247 69 HOH HOH A . G 3 HOH 48 248 71 HOH HOH A . G 3 HOH 49 249 74 HOH HOH A . G 3 HOH 50 250 75 HOH HOH A . G 3 HOH 51 251 78 HOH HOH A . G 3 HOH 52 252 80 HOH HOH A . G 3 HOH 53 253 81 HOH HOH A . G 3 HOH 54 254 82 HOH HOH A . G 3 HOH 55 255 87 HOH HOH A . G 3 HOH 56 256 90 HOH HOH A . G 3 HOH 57 257 91 HOH HOH A . G 3 HOH 58 258 96 HOH HOH A . G 3 HOH 59 259 100 HOH HOH A . G 3 HOH 60 260 103 HOH HOH A . G 3 HOH 61 261 107 HOH HOH A . G 3 HOH 62 262 111 HOH HOH A . G 3 HOH 63 263 113 HOH HOH A . G 3 HOH 64 264 114 HOH HOH A . G 3 HOH 65 265 115 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 840 ? 1 MORE -25 ? 1 'SSA (A^2)' 6290 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? A C 8 ? A C 8 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 "O2'" ? A A 20 ? A A 20 ? 1_555 46.4 ? 2 O2 ? A C 8 ? A C 8 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 "O2'" ? A C 29 ? A C 29 ? 1_555 138.6 ? 3 "O2'" ? A A 20 ? A A 20 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 "O2'" ? A C 29 ? A C 29 ? 1_555 125.4 ? 4 O2 ? A C 8 ? A C 8 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O2 ? A C 29 ? A C 29 ? 1_555 69.2 ? 5 "O2'" ? A A 20 ? A A 20 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O2 ? A C 29 ? A C 29 ? 1_555 108.8 ? 6 "O2'" ? A C 29 ? A C 29 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O2 ? A C 29 ? A C 29 ? 1_555 82.3 ? 7 O2 ? A C 8 ? A C 8 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 221 ? 1_555 89.0 ? 8 "O2'" ? A A 20 ? A A 20 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 221 ? 1_555 107.3 ? 9 "O2'" ? A C 29 ? A C 29 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 221 ? 1_555 124.7 ? 10 O2 ? A C 29 ? A C 29 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? G HOH . ? A HOH 221 ? 1_555 96.8 ? 11 "O2'" ? A A 10 ? A A 10 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O6 ? A G 12 ? A G 12 ? 1_555 66.5 ? 12 O ? G HOH . ? A HOH 223 ? 6_554 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 237 ? 1_555 170.8 ? 13 O ? G HOH . ? A HOH 223 ? 6_554 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 238 ? 1_555 79.4 ? 14 O ? G HOH . ? A HOH 237 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 238 ? 1_555 93.8 ? 15 O ? G HOH . ? A HOH 223 ? 6_554 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 257 ? 1_555 70.8 ? 16 O ? G HOH . ? A HOH 237 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 257 ? 1_555 101.1 ? 17 O ? G HOH . ? A HOH 238 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 257 ? 1_555 69.5 ? 18 O ? G HOH . ? A HOH 245 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 248 ? 1_555 92.0 ? 19 O ? G HOH . ? A HOH 245 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 249 ? 1_555 92.1 ? 20 O ? G HOH . ? A HOH 248 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 249 ? 1_555 95.8 ? 21 O ? G HOH . ? A HOH 245 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 254 ? 1_555 173.6 ? 22 O ? G HOH . ? A HOH 248 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 254 ? 1_555 92.7 ? 23 O ? G HOH . ? A HOH 249 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 254 ? 1_555 91.7 ? 24 O ? G HOH . ? A HOH 246 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 251 ? 1_555 77.9 ? 25 O ? G HOH . ? A HOH 246 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 261 ? 1_555 92.4 ? 26 O ? G HOH . ? A HOH 251 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 261 ? 1_555 167.8 ? 27 O ? G HOH . ? A HOH 246 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 265 ? 1_555 85.4 ? 28 O ? G HOH . ? A HOH 251 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 265 ? 1_555 91.2 ? 29 O ? G HOH . ? A HOH 261 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? G HOH . ? A HOH 265 ? 1_555 80.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-29 2 'Structure model' 1 1 2014-11-26 3 'Structure model' 1 2 2014-12-17 4 'Structure model' 1 3 2017-09-06 5 'Structure model' 1 4 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Source and taxonomy' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' pdbx_audit_support 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' pdbx_entity_src_syn 5 4 'Structure model' pdbx_struct_assembly 6 4 'Structure model' pdbx_struct_assembly_prop 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' pdbx_struct_oper_list 9 4 'Structure model' struct_keywords 10 5 'Structure model' chem_comp_atom 11 5 'Structure model' chem_comp_bond 12 5 'Structure model' database_2 13 5 'Structure model' pdbx_initial_refinement_model 14 5 'Structure model' pdbx_struct_conn_angle 15 5 'Structure model' refine_hist 16 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_id_CSD' 2 4 'Structure model' '_pdbx_database_status.pdb_format_compatible' 3 4 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 4 4 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 5 4 'Structure model' '_pdbx_struct_assembly_prop.type' 6 4 'Structure model' '_pdbx_struct_assembly_prop.value' 7 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 8 4 'Structure model' '_struct_keywords.text' 9 5 'Structure model' '_database_2.pdbx_DOI' 10 5 'Structure model' '_database_2.pdbx_database_accession' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 25 5 'Structure model' '_pdbx_struct_conn_angle.value' 26 5 'Structure model' '_refine_hist.number_atoms_solvent' 27 5 'Structure model' '_refine_hist.pdbx_number_atoms_ligand' 28 5 'Structure model' '_refine_hist.pdbx_number_atoms_nucleic_acid' 29 5 'Structure model' '_refine_hist.pdbx_number_atoms_protein' 30 5 'Structure model' '_struct_conn.pdbx_dist_value' 31 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 5 'Structure model' '_struct_conn.ptnr2_symmetry' # _software.citation_id ? _software.classification refinement _software.compiler_name . _software.compiler_version . _software.contact_author . _software.contact_author_email . _software.date . _software.description . _software.dependencies . _software.hardware . _software.language . _software.location . _software.mods . _software.name REFMAC _software.os . _software.os_version . _software.type . _software.version 5.7.0029 _software.pdbx_ordinal 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 201 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 224 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A G 21 ? ? P A G 21 ? ? OP2 A G 21 ? ? 97.64 105.70 -8.06 0.90 N 2 1 "O5'" A G 23 ? ? P A G 23 ? ? OP1 A G 23 ? ? 117.99 110.70 7.29 1.20 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 PSU N1 N N N 115 PSU C2 C N N 116 PSU N3 N N N 117 PSU C4 C N N 118 PSU C5 C N N 119 PSU C6 C N N 120 PSU O2 O N N 121 PSU O4 O N N 122 PSU "C1'" C N S 123 PSU "C2'" C N R 124 PSU "O2'" O N N 125 PSU "C3'" C N S 126 PSU "C4'" C N R 127 PSU "O3'" O N N 128 PSU "O4'" O N N 129 PSU "C5'" C N N 130 PSU "O5'" O N N 131 PSU P P N N 132 PSU OP1 O N N 133 PSU OP2 O N N 134 PSU OP3 O N N 135 PSU HN1 H N N 136 PSU HN3 H N N 137 PSU H6 H N N 138 PSU "H1'" H N N 139 PSU "H2'" H N N 140 PSU "HO2'" H N N 141 PSU "H3'" H N N 142 PSU "H4'" H N N 143 PSU "HO3'" H N N 144 PSU "H5'" H N N 145 PSU "H5''" H N N 146 PSU HOP2 H N N 147 PSU HOP3 H N N 148 U OP3 O N N 149 U P P N N 150 U OP1 O N N 151 U OP2 O N N 152 U "O5'" O N N 153 U "C5'" C N N 154 U "C4'" C N R 155 U "O4'" O N N 156 U "C3'" C N S 157 U "O3'" O N N 158 U "C2'" C N R 159 U "O2'" O N N 160 U "C1'" C N R 161 U N1 N N N 162 U C2 C N N 163 U O2 O N N 164 U N3 N N N 165 U C4 C N N 166 U O4 O N N 167 U C5 C N N 168 U C6 C N N 169 U HOP3 H N N 170 U HOP2 H N N 171 U "H5'" H N N 172 U "H5''" H N N 173 U "H4'" H N N 174 U "H3'" H N N 175 U "HO3'" H N N 176 U "H2'" H N N 177 U "HO2'" H N N 178 U "H1'" H N N 179 U H3 H N N 180 U H5 H N N 181 U H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 PSU N1 C2 sing N N 118 PSU N1 C6 sing N N 119 PSU N1 HN1 sing N N 120 PSU C2 N3 sing N N 121 PSU C2 O2 doub N N 122 PSU N3 C4 sing N N 123 PSU N3 HN3 sing N N 124 PSU C4 C5 sing N N 125 PSU C4 O4 doub N N 126 PSU C5 C6 doub N N 127 PSU C5 "C1'" sing N N 128 PSU C6 H6 sing N N 129 PSU "C1'" "C2'" sing N N 130 PSU "C1'" "O4'" sing N N 131 PSU "C1'" "H1'" sing N N 132 PSU "C2'" "O2'" sing N N 133 PSU "C2'" "C3'" sing N N 134 PSU "C2'" "H2'" sing N N 135 PSU "O2'" "HO2'" sing N N 136 PSU "C3'" "C4'" sing N N 137 PSU "C3'" "O3'" sing N N 138 PSU "C3'" "H3'" sing N N 139 PSU "C4'" "O4'" sing N N 140 PSU "C4'" "C5'" sing N N 141 PSU "C4'" "H4'" sing N N 142 PSU "O3'" "HO3'" sing N N 143 PSU "C5'" "O5'" sing N N 144 PSU "C5'" "H5'" sing N N 145 PSU "C5'" "H5''" sing N N 146 PSU "O5'" P sing N N 147 PSU P OP1 doub N N 148 PSU P OP2 sing N N 149 PSU P OP3 sing N N 150 PSU OP2 HOP2 sing N N 151 PSU OP3 HOP3 sing N N 152 U OP3 P sing N N 153 U OP3 HOP3 sing N N 154 U P OP1 doub N N 155 U P OP2 sing N N 156 U P "O5'" sing N N 157 U OP2 HOP2 sing N N 158 U "O5'" "C5'" sing N N 159 U "C5'" "C4'" sing N N 160 U "C5'" "H5'" sing N N 161 U "C5'" "H5''" sing N N 162 U "C4'" "O4'" sing N N 163 U "C4'" "C3'" sing N N 164 U "C4'" "H4'" sing N N 165 U "O4'" "C1'" sing N N 166 U "C3'" "O3'" sing N N 167 U "C3'" "C2'" sing N N 168 U "C3'" "H3'" sing N N 169 U "O3'" "HO3'" sing N N 170 U "C2'" "O2'" sing N N 171 U "C2'" "C1'" sing N N 172 U "C2'" "H2'" sing N N 173 U "O2'" "HO2'" sing N N 174 U "C1'" N1 sing N N 175 U "C1'" "H1'" sing N N 176 U N1 C2 sing N N 177 U N1 C6 sing N N 178 U C2 O2 doub N N 179 U C2 N3 sing N N 180 U N3 C4 sing N N 181 U N3 H3 sing N N 182 U C4 O4 doub N N 183 U C4 C5 sing N N 184 U C5 C6 doub N N 185 U C5 H5 sing N N 186 U C6 H6 sing N N 187 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4PCJ 'double helix' 4PCJ 'a-form double helix' 4PCJ tetraloop 4PCJ 'mismatched base pair' 4PCJ 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 35 1_555 0.155 -0.294 0.053 -3.502 -15.597 0.507 1 A_C1:G35_A A 1 ? A 35 ? 19 1 1 A U 2 1_555 A U 34 1_555 -2.261 -1.873 0.145 -0.625 -18.367 10.219 2 A_U2:U34_A A 2 ? A 34 ? 16 1 1 A G 3 1_555 A C 33 1_555 -0.298 -0.301 0.052 -4.342 -17.286 4.082 3 A_G3:C33_A A 3 ? A 33 ? 19 1 1 A C 4 1_555 A G 32 1_555 0.378 -0.205 0.084 0.380 -8.078 3.474 4 A_C4:G32_A A 4 ? A 32 ? 19 1 1 A PSU 5 1_555 A U 31 1_555 -2.997 -1.171 -0.337 7.479 -6.689 -38.769 5 A_PSU5:U31_A A 5 ? A 31 ? ? ? 1 A G 6 1_555 A C 30 1_555 -0.113 -0.257 -0.021 3.305 -2.692 -2.580 6 A_G6:C30_A A 6 ? A 30 ? 19 1 1 A G 7 1_555 A C 29 1_555 -0.330 -0.068 -0.078 -3.485 -11.913 1.963 7 A_G7:C29_A A 7 ? A 29 ? 19 1 1 A C 8 1_555 A G 28 1_555 0.018 -0.190 0.011 1.450 -7.490 -2.216 8 A_C8:G28_A A 8 ? A 28 ? 19 1 1 A A 26 1_555 A U 9 1_555 -4.437 -2.657 -0.370 16.744 -2.034 -87.382 9 A_A26:U9_A A 26 ? A 9 ? 24 4 1 A A 11 1_555 A U 27 1_555 0.041 -0.105 -0.384 -23.721 27.054 -3.725 10 A_A11:U27_A A 11 ? A 27 ? 20 1 1 A G 12 1_555 A U 25 1_555 -2.449 -0.721 -0.067 -3.630 -15.045 -2.763 11 A_G12:U25_A A 12 ? A 25 ? 28 1 1 A G 13 1_555 A C 24 1_555 -0.297 -0.173 -0.117 -6.456 -15.899 1.544 12 A_G13:C24_A A 13 ? A 24 ? 19 1 1 A C 14 1_555 A G 23 1_555 0.094 -0.216 0.082 -3.600 -12.498 -1.211 13 A_C14:G23_A A 14 ? A 23 ? 19 1 1 A A 15 1_555 A U 22 1_555 -0.016 -0.141 -0.095 -3.957 -12.374 5.589 14 A_A15:U22_A A 15 ? A 22 ? 20 1 1 A U 16 1_555 A G 21 1_555 2.368 -0.366 -0.171 1.372 -0.985 5.982 15 A_U16:G21_A A 16 ? A 21 ? 28 1 1 A G 17 1_555 A A 20 1_555 7.011 -5.283 0.573 15.177 0.116 -14.136 16 A_G17:A20_A A 17 ? A 20 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 35 1_555 A U 2 1_555 A U 34 1_555 0.227 -0.890 2.901 -8.710 17.739 28.636 -3.702 -1.464 1.906 31.559 15.497 34.675 1 AA_C1U2:U34G35_AA A 1 ? A 35 ? A 2 ? A 34 ? 1 A U 2 1_555 A U 34 1_555 A G 3 1_555 A C 33 1_555 -0.593 -0.755 3.387 -3.176 9.205 42.433 -1.927 0.488 3.197 12.520 4.320 43.486 2 AA_U2G3:C33U34_AA A 2 ? A 34 ? A 3 ? A 33 ? 1 A G 3 1_555 A C 33 1_555 A C 4 1_555 A G 32 1_555 0.168 -1.180 3.166 1.532 5.999 34.886 -2.769 -0.065 2.933 9.910 -2.530 35.414 3 AA_G3C4:G32C33_AA A 3 ? A 33 ? A 4 ? A 32 ? 1 A C 4 1_555 A G 32 1_555 A PSU 5 1_555 A U 31 1_555 -2.043 -2.163 2.970 -1.371 10.838 13.790 -11.728 6.099 1.165 38.233 4.835 17.577 4 AA_C4PSU5:U31G32_AA A 4 ? A 32 ? A 5 ? A 31 ? 1 A PSU 5 1_555 A U 31 1_555 A G 6 1_555 A C 30 1_555 1.731 -1.712 3.402 -4.561 6.672 48.651 -2.544 -2.412 2.993 8.034 5.492 49.278 5 AA_PSU5G6:C30U31_AA A 5 ? A 31 ? A 6 ? A 30 ? 1 A G 6 1_555 A C 30 1_555 A G 7 1_555 A C 29 1_555 0.760 -1.926 3.365 0.498 5.246 34.048 -4.059 -1.207 3.054 8.892 -0.844 34.441 6 AA_G6G7:C29C30_AA A 6 ? A 30 ? A 7 ? A 29 ? 1 A G 7 1_555 A C 29 1_555 A C 8 1_555 A G 28 1_555 -0.815 -2.653 3.056 -2.798 2.222 27.081 -6.125 1.090 2.901 4.719 5.941 27.311 7 AA_G7C8:G28C29_AA A 7 ? A 29 ? A 8 ? A 28 ? 1 A C 8 1_555 A G 28 1_555 A A 26 1_555 A U 9 1_555 -0.080 -4.878 -0.442 -130.688 -106.827 69.092 -2.131 -0.346 2.338 -54.944 67.217 170.774 8 AA_C8A26:U9G28_AA A 8 ? A 28 ? A 26 ? A 9 ? 1 A A 26 1_555 A U 9 1_555 A A 11 1_555 A U 27 1_555 -2.326 3.590 2.691 -147.866 -20.276 73.254 2.034 -0.249 3.082 -10.961 79.935 155.429 9 AA_A26A11:U27U9_AA A 26 ? A 9 ? A 11 ? A 27 ? 1 A A 11 1_555 A U 27 1_555 A G 12 1_555 A U 25 1_555 4.639 -0.370 2.671 -6.722 27.566 62.545 -1.106 -4.333 1.931 25.226 6.152 68.081 10 AA_A11G12:U25U27_AA A 11 ? A 27 ? A 12 ? A 25 ? 1 A G 12 1_555 A U 25 1_555 A G 13 1_555 A C 24 1_555 0.010 -1.654 3.445 -1.720 7.158 37.446 -3.443 -0.235 3.085 11.018 2.648 38.138 11 AA_G12G13:C24U25_AA A 12 ? A 25 ? A 13 ? A 24 ? 1 A G 13 1_555 A C 24 1_555 A C 14 1_555 A G 23 1_555 -0.298 -1.459 3.190 -1.580 3.860 32.919 -3.172 0.270 3.015 6.778 2.775 33.175 12 AA_G13C14:G23C24_AA A 13 ? A 24 ? A 14 ? A 23 ? 1 A C 14 1_555 A G 23 1_555 A A 15 1_555 A U 22 1_555 0.594 -1.600 3.197 2.629 10.791 30.578 -4.572 -0.644 2.542 19.665 -4.792 32.487 13 AA_C14A15:U22G23_AA A 14 ? A 23 ? A 15 ? A 22 ? 1 A A 15 1_555 A U 22 1_555 A U 16 1_555 A G 21 1_555 0.314 -1.196 3.204 1.705 7.604 37.025 -2.772 -0.276 2.922 11.814 -2.649 37.808 14 AA_A15U16:G21U22_AA A 15 ? A 22 ? A 16 ? A 21 ? 1 A U 16 1_555 A G 21 1_555 A G 17 1_555 A A 20 1_555 -1.794 -0.985 2.948 0.641 10.806 45.735 -2.011 2.299 2.639 13.679 -0.811 46.932 15 AA_U16G17:A20G21_AA A 16 ? A 21 ? A 17 ? A 20 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4FNJ _pdbx_initial_refinement_model.details ? #