HEADER BIOSYNTHETIC PROTEIN,STRUCTURAL PROTEIN 17-APR-14 4PD0 TITLE 1.7 A RESOLUTION STRUCTURE OF GEPHYRIN'S E-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEPHYRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: E-DOMAIN (UNP RESIDUES 350-768); COMPND 5 SYNONYM: PUTATIVE GLYCINE RECEPTOR-TUBULIN LINKER PROTEIN; COMPND 6 EC: 2.7.7.75,2.10.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GPHN, GPH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SCAFFOLDING PROTEIN, NEUROTRANSMITTER RECEPTOR ANCHORING PROTEIN, KEYWDS 2 MOLYBDENUM COFACTOR BIOSYNTHESIS, BIOSYNTHETIC PROTEIN, STRUCTURAL KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.B.KASARAGOD,H.M.MARIC,H.SCHINDELIN REVDAT 7 27-SEP-23 4PD0 1 REMARK REVDAT 6 08-JAN-20 4PD0 1 REMARK REVDAT 5 27-SEP-17 4PD0 1 SOURCE REMARK REVDAT 4 03-DEC-14 4PD0 1 JRNL REVDAT 3 17-SEP-14 4PD0 1 JRNL REVDAT 2 03-SEP-14 4PD0 1 JRNL REVDAT 1 27-AUG-14 4PD0 0 JRNL AUTH H.M.MARIC,V.B.KASARAGOD,H.SCHINDELIN JRNL TITL MODULATION OF GEPHYRIN-GLYCINE RECEPTOR AFFINITY BY JRNL TITL 2 MULTIVALENCY. JRNL REF ACS CHEM.BIOL. V. 9 2554 2014 JRNL REFN ESSN 1554-8937 JRNL PMID 25137389 JRNL DOI 10.1021/CB500303A REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 55170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8420 - 4.6129 1.00 2770 154 0.1702 0.1923 REMARK 3 2 4.6129 - 3.6620 1.00 2675 150 0.1337 0.1408 REMARK 3 3 3.6620 - 3.1993 1.00 2666 141 0.1485 0.1724 REMARK 3 4 3.1993 - 2.9068 1.00 2622 141 0.1571 0.1627 REMARK 3 5 2.9068 - 2.6985 1.00 2644 140 0.1593 0.2087 REMARK 3 6 2.6985 - 2.5394 1.00 2607 151 0.1625 0.1673 REMARK 3 7 2.5394 - 2.4123 1.00 2590 141 0.1489 0.1781 REMARK 3 8 2.4123 - 2.3073 1.00 2615 148 0.1431 0.1859 REMARK 3 9 2.3073 - 2.2184 1.00 2614 143 0.1538 0.1931 REMARK 3 10 2.2184 - 2.1419 1.00 2574 151 0.1596 0.2001 REMARK 3 11 2.1419 - 2.0749 1.00 2613 138 0.1563 0.1807 REMARK 3 12 2.0749 - 2.0156 1.00 2595 147 0.1648 0.1903 REMARK 3 13 2.0156 - 1.9625 1.00 2588 146 0.1783 0.2026 REMARK 3 14 1.9625 - 1.9147 1.00 2607 126 0.1789 0.1991 REMARK 3 15 1.9147 - 1.8711 1.00 2589 123 0.2003 0.2540 REMARK 3 16 1.8711 - 1.8313 1.00 2599 135 0.2067 0.2722 REMARK 3 17 1.8313 - 1.7947 1.00 2624 111 0.2177 0.2713 REMARK 3 18 1.7947 - 1.7608 1.00 2590 139 0.2258 0.2452 REMARK 3 19 1.7608 - 1.7294 1.00 2577 143 0.2308 0.2723 REMARK 3 20 1.7294 - 1.7000 1.00 2611 132 0.2341 0.2599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3264 REMARK 3 ANGLE : 1.322 4448 REMARK 3 CHIRALITY : 0.080 520 REMARK 3 PLANARITY : 0.007 588 REMARK 3 DIHEDRAL : 12.626 1249 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1271 30.7893 107.6308 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.1860 REMARK 3 T33: 0.1968 T12: 0.0602 REMARK 3 T13: -0.0197 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.8268 L22: 3.3355 REMARK 3 L33: 5.3516 L12: -0.7019 REMARK 3 L13: -1.2758 L23: 3.1679 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: 0.0510 S13: -0.1482 REMARK 3 S21: -0.2599 S22: 0.1980 S23: -0.3127 REMARK 3 S31: 0.0378 S32: 0.4257 S33: -0.2394 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6491 30.4972 153.9796 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.2915 REMARK 3 T33: 0.2553 T12: -0.0407 REMARK 3 T13: 0.0093 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 3.2089 L22: 0.5367 REMARK 3 L33: 4.1249 L12: 1.2742 REMARK 3 L13: -3.6185 L23: -1.2443 REMARK 3 S TENSOR REMARK 3 S11: 0.2052 S12: -0.2970 S13: -0.0697 REMARK 3 S21: 0.1401 S22: -0.1952 S23: 0.0465 REMARK 3 S31: -0.1773 S32: 0.1638 S33: 0.0043 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 550 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6889 39.6064 105.5499 REMARK 3 T TENSOR REMARK 3 T11: 0.1680 T22: 0.1880 REMARK 3 T33: 0.2294 T12: 0.0201 REMARK 3 T13: 0.0105 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.6068 L22: 0.4915 REMARK 3 L33: 7.3204 L12: -0.0009 REMARK 3 L13: 1.1719 L23: -0.8026 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.1056 S13: -0.0133 REMARK 3 S21: -0.0625 S22: -0.0165 S23: -0.0121 REMARK 3 S31: -0.0963 S32: 0.0234 S33: 0.0532 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 551 THROUGH 627 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0838 36.9477 94.2530 REMARK 3 T TENSOR REMARK 3 T11: 0.2241 T22: 0.3458 REMARK 3 T33: 0.2275 T12: 0.0234 REMARK 3 T13: 0.0291 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 3.4453 L22: 4.7959 REMARK 3 L33: 1.5075 L12: -0.0547 REMARK 3 L13: -0.3244 L23: -0.6618 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: 0.5790 S13: 0.1686 REMARK 3 S21: -0.6100 S22: 0.0188 S23: -0.2811 REMARK 3 S31: -0.0108 S32: 0.3163 S33: -0.0040 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 628 THROUGH 686 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5057 19.6739 104.0162 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.1679 REMARK 3 T33: 0.2388 T12: 0.0400 REMARK 3 T13: -0.0135 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.0607 L22: 2.9210 REMARK 3 L33: 1.3131 L12: 1.8006 REMARK 3 L13: 0.0949 L23: -0.2384 REMARK 3 S TENSOR REMARK 3 S11: -0.1030 S12: 0.1122 S13: -0.1454 REMARK 3 S21: -0.2443 S22: 0.1016 S23: 0.0808 REMARK 3 S31: 0.3266 S32: -0.0468 S33: -0.0083 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 687 THROUGH 712 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2029 18.8355 100.4723 REMARK 3 T TENSOR REMARK 3 T11: 0.3829 T22: 0.3942 REMARK 3 T33: 0.4881 T12: -0.0281 REMARK 3 T13: -0.1137 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 5.9233 L22: 5.0263 REMARK 3 L33: 2.7493 L12: -3.0106 REMARK 3 L13: -2.0061 L23: 0.9318 REMARK 3 S TENSOR REMARK 3 S11: 0.1901 S12: 1.2673 S13: 0.3651 REMARK 3 S21: -0.8957 S22: -0.0557 S23: 1.1699 REMARK 3 S31: 0.0296 S32: -0.6296 S33: -0.0674 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 713 THROUGH 736 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6946 9.6499 99.5824 REMARK 3 T TENSOR REMARK 3 T11: 0.3822 T22: 0.1924 REMARK 3 T33: 0.3735 T12: 0.0357 REMARK 3 T13: 0.0579 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 3.9794 L22: 2.9751 REMARK 3 L33: 4.3878 L12: 1.7941 REMARK 3 L13: 2.0667 L23: -1.4127 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: 0.3437 S13: -0.6642 REMARK 3 S21: -0.4022 S22: -0.0261 S23: -0.2494 REMARK 3 S31: 0.6482 S32: 0.1625 S33: -0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9198 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55179 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 43.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2FU3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM-CITRATE, PH 4.5, 28-34% 2 REMARK 280 -METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.82750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.00400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.84750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.82750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.00400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.84750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.82750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.00400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.84750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.82750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.00400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.84750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 227.39000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 824 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 934 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 936 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1084 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 318 REMARK 465 MET A 696 REMARK 465 SER A 697 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 398 O HOH A 1126 1.38 REMARK 500 HZ3 LYS A 362 O HOH A 1071 1.53 REMARK 500 O HOH A 1093 O HOH A 1125 2.11 REMARK 500 O HOH A 1024 O HOH A 1098 2.19 REMARK 500 O HOH A 866 O HOH A 1067 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 814 O HOH A 823 3557 2.04 REMARK 500 O HOH A 903 O HOH A 946 8557 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 578 -20.48 -30.28 REMARK 500 LYS A 579 -147.22 -96.22 REMARK 500 HIS A 682 -109.42 36.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1084 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1108 DISTANCE = 6.15 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FU3 RELATED DB: PDB REMARK 900 RELATED ID: 4PD1 RELATED DB: PDB DBREF 4PD0 A 318 736 UNP Q03555 GEPH_RAT 350 768 SEQRES 1 A 419 MET SER PRO PHE PRO LEU THR SER MET ASP LYS ALA PHE SEQRES 2 A 419 ILE THR VAL LEU GLU MET THR PRO VAL LEU GLY THR GLU SEQRES 3 A 419 ILE ILE ASN TYR ARG ASP GLY MET GLY ARG VAL LEU ALA SEQRES 4 A 419 GLN ASP VAL TYR ALA LYS ASP ASN LEU PRO PRO PHE PRO SEQRES 5 A 419 ALA SER VAL LYS ASP GLY TYR ALA VAL ARG ALA ALA ASP SEQRES 6 A 419 GLY PRO GLY ASP ARG PHE ILE ILE GLY GLU SER GLN ALA SEQRES 7 A 419 GLY GLU GLN PRO THR GLN THR VAL MET PRO GLY GLN VAL SEQRES 8 A 419 MET ARG VAL THR THR GLY ALA PRO ILE PRO CYS GLY ALA SEQRES 9 A 419 ASP ALA VAL VAL GLN VAL GLU ASP THR GLU LEU ILE ARG SEQRES 10 A 419 GLU SER ASP ASP GLY THR GLU GLU LEU GLU VAL ARG ILE SEQRES 11 A 419 LEU VAL GLN ALA ARG PRO GLY GLN ASP ILE ARG PRO ILE SEQRES 12 A 419 GLY HIS ASP ILE LYS ARG GLY GLU CYS VAL LEU ALA LYS SEQRES 13 A 419 GLY THR HIS MET GLY PRO SER GLU ILE GLY LEU LEU ALA SEQRES 14 A 419 THR VAL GLY VAL THR GLU VAL GLU VAL ASN LYS PHE PRO SEQRES 15 A 419 VAL VAL ALA VAL MET SER THR GLY ASN GLU LEU LEU ASN SEQRES 16 A 419 PRO GLU ASP ASP LEU LEU PRO GLY LYS ILE ARG ASP SER SEQRES 17 A 419 ASN ARG SER THR LEU LEU ALA THR ILE GLN GLU HIS GLY SEQRES 18 A 419 TYR PRO THR ILE ASN LEU GLY ILE VAL GLY ASP ASN PRO SEQRES 19 A 419 ASP ASP LEU LEU ASN ALA LEU ASN GLU GLY ILE SER ARG SEQRES 20 A 419 ALA ASP VAL ILE ILE THR SER GLY GLY VAL SER MET GLY SEQRES 21 A 419 GLU LYS ASP TYR LEU LYS GLN VAL LEU ASP ILE ASP LEU SEQRES 22 A 419 HIS ALA GLN ILE HIS PHE GLY ARG VAL PHE MET LYS PRO SEQRES 23 A 419 GLY LEU PRO THR THR PHE ALA THR LEU ASP ILE ASP GLY SEQRES 24 A 419 VAL ARG LYS ILE ILE PHE ALA LEU PRO GLY ASN PRO VAL SEQRES 25 A 419 SER ALA VAL VAL THR CYS ASN LEU PHE VAL VAL PRO ALA SEQRES 26 A 419 LEU ARG LYS MET GLN GLY ILE LEU ASP PRO ARG PRO THR SEQRES 27 A 419 ILE ILE LYS ALA ARG LEU SER CYS ASP VAL LYS LEU ASP SEQRES 28 A 419 PRO ARG PRO GLU TYR HIS ARG CYS ILE LEU THR TRP HIS SEQRES 29 A 419 HIS GLN GLU PRO LEU PRO TRP ALA GLN SER THR GLY ASN SEQRES 30 A 419 GLN MET SER SER ARG LEU MET SER MET ARG SER ALA ASN SEQRES 31 A 419 GLY LEU LEU MET LEU PRO PRO LYS THR GLU GLN TYR VAL SEQRES 32 A 419 GLU LEU HIS LYS GLY GLU VAL VAL ASP VAL MET VAL ILE SEQRES 33 A 419 GLY ARG LEU FORMUL 2 HOH *329(H2 O) HELIX 1 AA1 SER A 325 THR A 337 1 13 HELIX 2 AA2 ARG A 348 GLY A 350 5 3 HELIX 3 AA3 ARG A 379 GLY A 383 5 5 HELIX 4 AA4 GLY A 478 GLY A 489 1 12 HELIX 5 AA5 SER A 525 HIS A 537 1 13 HELIX 6 AA6 ASN A 550 ALA A 565 1 16 HELIX 7 AA7 ASP A 580 ASP A 589 1 10 HELIX 8 AA8 ASN A 627 PHE A 638 1 12 HELIX 9 AA9 PHE A 638 GLN A 647 1 10 HELIX 10 AB1 ARG A 699 ARG A 704 1 6 SHEET 1 AA1 2 LEU A 323 THR A 324 0 SHEET 2 AA1 2 ARG A 598 VAL A 599 1 O ARG A 598 N THR A 324 SHEET 1 AA2 2 THR A 342 ASN A 346 0 SHEET 2 AA2 2 GLU A 492 ASN A 496 -1 O VAL A 495 N GLU A 343 SHEET 1 AA3 2 VAL A 359 TYR A 360 0 SHEET 2 AA3 2 CYS A 469 LEU A 471 -1 O LEU A 471 N VAL A 359 SHEET 1 AA4 2 ALA A 370 SER A 371 0 SHEET 2 AA4 2 ILE A 457 ARG A 458 -1 O ARG A 458 N ALA A 370 SHEET 1 AA5 6 ALA A 423 GLN A 426 0 SHEET 2 AA5 6 GLY A 375 VAL A 378 -1 N TYR A 376 O VAL A 425 SHEET 3 AA5 6 GLN A 407 VAL A 411 -1 O MET A 409 N ALA A 377 SHEET 4 AA5 6 GLY A 385 SER A 393 1 N SER A 393 O ARG A 410 SHEET 5 AA5 6 GLU A 442 ILE A 447 -1 O ILE A 447 N GLY A 385 SHEET 6 AA5 6 THR A 430 GLU A 435 -1 N GLU A 431 O ARG A 446 SHEET 1 AA6 6 THR A 541 VAL A 547 0 SHEET 2 AA6 6 VAL A 501 THR A 506 1 N SER A 505 O VAL A 547 SHEET 3 AA6 6 VAL A 567 SER A 571 1 O ILE A 569 N ALA A 502 SHEET 4 AA6 6 VAL A 617 LEU A 624 1 O LEU A 624 N THR A 570 SHEET 5 AA6 6 THR A 608 ILE A 614 -1 N LEU A 612 O LYS A 619 SHEET 6 AA6 6 GLN A 593 PHE A 596 -1 N GLN A 593 O THR A 611 SHEET 1 AA7 2 LEU A 510 LEU A 511 0 SHEET 2 AA7 2 ILE A 522 ARG A 523 1 O ILE A 522 N LEU A 511 SHEET 1 AA8 6 ILE A 656 LEU A 661 0 SHEET 2 AA8 6 TRP A 688 SER A 691 1 O ALA A 689 N ARG A 660 SHEET 3 AA8 6 GLU A 672 THR A 679 -1 N THR A 679 O TRP A 688 SHEET 4 AA8 6 GLY A 708 LEU A 712 -1 O LEU A 712 N GLU A 672 SHEET 5 AA8 6 VAL A 727 VAL A 732 -1 O MET A 731 N LEU A 709 SHEET 6 AA8 6 ILE A 656 LEU A 661 -1 N ALA A 659 O VAL A 728 SHEET 1 AA9 2 VAL A 665 LYS A 666 0 SHEET 2 AA9 2 GLU A 721 LEU A 722 -1 O LEU A 722 N VAL A 665 CISPEP 1 SER A 319 PRO A 320 0 0.36 CISPEP 2 LEU A 365 PRO A 366 0 -7.28 CISPEP 3 LYS A 602 PRO A 603 0 -7.87 CRYST1 87.655 100.008 113.695 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011408 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008795 0.00000