HEADER TRANSCRIPTION 19-APR-14 4PDK TITLE FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM VIBRIO CHOLERAE, TITLE 2 IN COMPLEX WITH OLEOYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID METABOLISM REGULATOR PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (ATCC 39315 / EL SOURCE 3 TOR INABA N16961); SOURCE 4 ORGANISM_TAXID: 243277; SOURCE 5 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 6 GENE: FADR, VC_1900; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PTXB1 KEYWDS TRANSCRIPTION REGULATOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.SHI,F.J.KULL REVDAT 5 27-DEC-23 4PDK 1 REMARK REVDAT 4 11-DEC-19 4PDK 1 REMARK REVDAT 3 20-SEP-17 4PDK 1 SOURCE REMARK REVDAT 2 25-FEB-15 4PDK 1 REMARK REVDAT 1 18-FEB-15 4PDK 0 JRNL AUTH W.SHI,G.KOVACIKOVA,W.LIN,R.K.TAYLOR,K.SKORUPSKI,F.J.KULL JRNL TITL THE 40-RESIDUE INSERTION IN VIBRIO CHOLERAE FADR FACILITATES JRNL TITL 2 BINDING OF AN ADDITIONAL FATTY ACYL-COA LIGAND. JRNL REF NAT COMMUN V. 6 6032 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25607896 JRNL DOI 10.1038/NCOMMS7032 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 16558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7300 - 6.3447 0.99 1323 147 0.2172 0.2364 REMARK 3 2 6.3447 - 5.0640 1.00 1286 144 0.2434 0.2862 REMARK 3 3 5.0640 - 4.4321 1.00 1248 138 0.2134 0.2921 REMARK 3 4 4.4321 - 4.0306 1.00 1244 138 0.2263 0.2736 REMARK 3 5 4.0306 - 3.7438 1.00 1245 137 0.2505 0.2657 REMARK 3 6 3.7438 - 3.5244 1.00 1235 138 0.2574 0.3011 REMARK 3 7 3.5244 - 3.3488 1.00 1235 137 0.2712 0.3068 REMARK 3 8 3.3488 - 3.2037 0.99 1224 136 0.2897 0.3035 REMARK 3 9 3.2037 - 3.0808 0.99 1213 135 0.3035 0.3932 REMARK 3 10 3.0808 - 2.9749 1.00 1222 134 0.3227 0.3504 REMARK 3 11 2.9749 - 2.8822 0.99 1203 135 0.3168 0.3504 REMARK 3 12 2.8822 - 2.8000 0.99 1226 135 0.3610 0.4000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4610 REMARK 3 ANGLE : 2.148 6236 REMARK 3 CHIRALITY : 0.095 656 REMARK 3 PLANARITY : 0.009 774 REMARK 3 DIHEDRAL : 22.528 1724 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 16.9316 -20.0420 -9.1424 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: -0.0094 REMARK 3 T33: -0.0459 T12: -0.0277 REMARK 3 T13: 0.0138 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 0.0024 L22: 0.0093 REMARK 3 L33: 0.0189 L12: 0.0125 REMARK 3 L13: 0.0099 L23: -0.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: -0.0149 S13: -0.0786 REMARK 3 S21: -0.0185 S22: -0.0372 S23: 0.0702 REMARK 3 S31: 0.0071 S32: -0.0537 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID REMARK 3 SELECTION : CHAIN B AND SEGID REMARK 3 ATOM PAIRS NUMBER : 2211 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16577 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.630 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER (PHENIX.MOLECULAR REPLACEMENT: 1.8.4_1496) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 3350, 0.23M MAGNESIUM FORMATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 58.46000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.43000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.43000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.46000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ILE A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 LYS A 267 REMARK 465 MET A 268 REMARK 465 THR A 269 REMARK 465 LEU A 270 REMARK 465 PRO A 271 REMARK 465 SER A 272 REMARK 465 ASN A 273 REMARK 465 PHE A 274 REMARK 465 THR A 275 REMARK 465 GLU A 276 REMARK 465 ASP A 277 REMARK 465 ASP A 278 REMARK 465 CYS A 279 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ILE B 3 REMARK 465 LYS B 4 REMARK 465 ALA B 5 REMARK 465 LYS B 6 REMARK 465 SER B 7 REMARK 465 ASN B 273 REMARK 465 PHE B 274 REMARK 465 THR B 275 REMARK 465 GLU B 276 REMARK 465 ASP B 277 REMARK 465 ASP B 278 REMARK 465 CYS B 279 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 272 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 29 NZ LYS A 70 1.87 REMARK 500 O GLU B 34 NH1 ARG B 45 1.90 REMARK 500 NH1 ARG A 54 OD2 ASP A 58 2.00 REMARK 500 O VAL A 43 NH1 ARG A 45 2.01 REMARK 500 OG SER B 38 NH1 ARG B 45 2.04 REMARK 500 O LEU B 86 NH1 ARG B 214 2.06 REMARK 500 O MET A 75 N THR A 77 2.06 REMARK 500 O GLY A 59 ND2 ASN A 72 2.10 REMARK 500 O ASN B 93 N THR B 95 2.13 REMARK 500 O SER B 96 N ASP B 100 2.16 REMARK 500 O ILE B 257 ND1 HIS B 261 2.18 REMARK 500 NE1 TRP B 60 OD2 ASP B 84 2.18 REMARK 500 OD1 ASP B 185 OH TYR B 212 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 61 CB - CG - CD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 GLN A 64 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 LYS A 67 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 PRO A 68 C - N - CA ANGL. DEV. = 12.8 DEGREES REMARK 500 LEU A 80 CA - CB - CG ANGL. DEV. = 19.9 DEGREES REMARK 500 HIS A 81 N - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 LEU A 89 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A 266 CG - SD - CE ANGL. DEV. = -12.9 DEGREES REMARK 500 GLU B 34 C - N - CA ANGL. DEV. = -15.1 DEGREES REMARK 500 LEU B 48 CB - CG - CD2 ANGL. DEV. = -14.3 DEGREES REMARK 500 PRO B 68 C - N - CA ANGL. DEV. = -10.2 DEGREES REMARK 500 THR B 85 N - CA - C ANGL. DEV. = 19.6 DEGREES REMARK 500 LEU B 86 CA - CB - CG ANGL. DEV. = -18.0 DEGREES REMARK 500 MET B 87 CA - CB - CG ANGL. DEV. = 11.0 DEGREES REMARK 500 THR B 88 C - N - CA ANGL. DEV. = -18.0 DEGREES REMARK 500 ASP B 90 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 21 -70.70 -59.30 REMARK 500 PRO A 27 91.48 -56.22 REMARK 500 ILE A 41 16.11 -146.53 REMARK 500 HIS A 65 -114.09 -76.14 REMARK 500 LYS A 67 168.16 42.68 REMARK 500 GLN A 73 -119.57 19.56 REMARK 500 PHE A 74 11.25 164.61 REMARK 500 MET A 75 -61.46 179.89 REMARK 500 GLU A 76 -21.63 44.89 REMARK 500 THR A 77 134.95 69.94 REMARK 500 SER A 78 105.00 -16.54 REMARK 500 LEU A 80 -114.28 23.05 REMARK 500 HIS A 81 84.11 -155.07 REMARK 500 ASP A 84 20.79 -170.64 REMARK 500 MET A 87 49.08 -70.45 REMARK 500 THR A 88 -67.64 -15.17 REMARK 500 LEU A 89 -90.21 -130.53 REMARK 500 ASP A 90 35.73 -144.13 REMARK 500 THR A 95 -89.74 24.72 REMARK 500 SER A 96 16.78 -144.34 REMARK 500 ASP A 168 106.63 -54.75 REMARK 500 GLN A 265 124.72 65.78 REMARK 500 PHE B 25 78.88 -118.35 REMARK 500 PRO B 32 129.63 -24.12 REMARK 500 ALA B 33 -174.46 -61.31 REMARK 500 GLU B 36 -89.07 20.49 REMARK 500 GLN B 64 127.28 103.90 REMARK 500 HIS B 65 -98.83 29.76 REMARK 500 GLN B 73 -175.01 58.78 REMARK 500 MET B 75 -40.59 163.46 REMARK 500 GLU B 76 -109.62 43.60 REMARK 500 LEU B 80 -89.71 -53.56 REMARK 500 ASP B 84 -133.68 -147.25 REMARK 500 THR B 85 -8.74 7.91 REMARK 500 MET B 87 -119.90 90.15 REMARK 500 THR B 88 -113.92 -158.32 REMARK 500 LEU B 89 -128.89 114.01 REMARK 500 ASP B 90 39.52 -160.50 REMARK 500 ASN B 93 -83.10 -42.21 REMARK 500 ALA B 94 -39.40 26.79 REMARK 500 THR B 95 -84.75 42.64 REMARK 500 SER B 96 -16.85 -144.97 REMARK 500 GLU B 122 -102.50 14.02 REMARK 500 ASP B 168 105.02 -52.76 REMARK 500 LYS B 267 -62.42 -125.66 REMARK 500 LEU B 270 -155.55 -156.42 REMARK 500 PRO B 271 -126.04 -32.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 19 ILE A 20 146.00 REMARK 500 ILE A 63 GLN A 64 -116.23 REMARK 500 LYS A 67 PRO A 68 130.55 REMARK 500 PHE A 74 MET A 75 100.61 REMARK 500 LEU A 83 ASP A 84 -145.46 REMARK 500 LEU A 86 MET A 87 142.37 REMARK 500 THR A 88 LEU A 89 135.96 REMARK 500 THR A 95 SER A 96 139.51 REMARK 500 ARG B 35 GLU B 36 128.40 REMARK 500 ARG B 57 ASP B 58 128.43 REMARK 500 GLN B 73 PHE B 74 143.45 REMARK 500 LEU B 83 ASP B 84 -135.30 REMARK 500 ASP B 84 THR B 85 135.86 REMARK 500 THR B 85 LEU B 86 -96.78 REMARK 500 MET B 87 THR B 88 -121.38 REMARK 500 THR B 88 LEU B 89 -115.03 REMARK 500 LEU B 89 ASP B 90 148.61 REMARK 500 LYS B 121 GLU B 122 142.98 REMARK 500 LEU B 270 PRO B 271 -139.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3VV A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3VV A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3VV B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3VV B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P96 RELATED DB: PDB REMARK 900 4P96 CONTAINS THE SAME PROTEIN IN THE APO-FORM. REMARK 900 RELATED ID: 4P9U RELATED DB: PDB REMARK 900 4P9U CONTAINS THE SAME PROTEIN COMPLEXED WITH DNA. DBREF 4PDK A 1 279 UNP Q9KQU8 FADR_VIBCH 1 279 DBREF 4PDK B 1 279 UNP Q9KQU8 FADR_VIBCH 1 279 SEQRES 1 A 279 MET VAL ILE LYS ALA LYS SER PRO ALA GLY PHE ALA GLU SEQRES 2 A 279 LYS TYR ILE ILE GLU SER ILE TRP ASN GLY ARG PHE PRO SEQRES 3 A 279 PRO GLY SER ILE LEU PRO ALA GLU ARG GLU LEU SER GLU SEQRES 4 A 279 LEU ILE GLY VAL THR ARG THR THR LEU ARG GLU VAL LEU SEQRES 5 A 279 GLN ARG LEU ALA ARG ASP GLY TRP LEU THR ILE GLN HIS SEQRES 6 A 279 GLY LYS PRO THR LYS VAL ASN GLN PHE MET GLU THR SER SEQRES 7 A 279 GLY LEU HIS ILE LEU ASP THR LEU MET THR LEU ASP ALA SEQRES 8 A 279 GLU ASN ALA THR SER ILE VAL GLU ASP LEU LEU ALA ALA SEQRES 9 A 279 ARG THR ASN ILE SER PRO ILE PHE MET ARG TYR ALA PHE SEQRES 10 A 279 LYS LEU ASN LYS GLU SER ALA GLU ARG ILE MET ILE ASN SEQRES 11 A 279 VAL ILE GLU SER CYS GLU ALA LEU VAL ASN ALA PRO SER SEQRES 12 A 279 TRP ASP ALA PHE ILE ALA ALA SER PRO TYR ALA GLU LYS SEQRES 13 A 279 ILE GLN GLN HIS VAL LYS GLU ASP SER GLU LYS ASP GLU SEQRES 14 A 279 LEU LYS ARG GLN GLU ILE LEU ILE ALA LYS THR PHE ASN SEQRES 15 A 279 PHE TYR ASP TYR MET LEU PHE GLN ARG LEU ALA PHE HIS SEQRES 16 A 279 SER GLY ASN GLN ILE TYR GLY LEU ILE PHE ASN GLY LEU SEQRES 17 A 279 LYS LYS LEU TYR ASP ARG VAL GLY SER TYR TYR PHE SER SEQRES 18 A 279 ASN PRO GLN ALA ARG GLU LEU ALA MET GLU PHE TYR ARG SEQRES 19 A 279 GLN LEU LEU ALA VAL CYS GLN SER GLY GLU ARG GLU HIS SEQRES 20 A 279 LEU PRO GLN VAL ILE ARG GLN TYR GLY ILE ALA SER GLY SEQRES 21 A 279 HIS ILE TRP ASN GLN MET LYS MET THR LEU PRO SER ASN SEQRES 22 A 279 PHE THR GLU ASP ASP CYS SEQRES 1 B 279 MET VAL ILE LYS ALA LYS SER PRO ALA GLY PHE ALA GLU SEQRES 2 B 279 LYS TYR ILE ILE GLU SER ILE TRP ASN GLY ARG PHE PRO SEQRES 3 B 279 PRO GLY SER ILE LEU PRO ALA GLU ARG GLU LEU SER GLU SEQRES 4 B 279 LEU ILE GLY VAL THR ARG THR THR LEU ARG GLU VAL LEU SEQRES 5 B 279 GLN ARG LEU ALA ARG ASP GLY TRP LEU THR ILE GLN HIS SEQRES 6 B 279 GLY LYS PRO THR LYS VAL ASN GLN PHE MET GLU THR SER SEQRES 7 B 279 GLY LEU HIS ILE LEU ASP THR LEU MET THR LEU ASP ALA SEQRES 8 B 279 GLU ASN ALA THR SER ILE VAL GLU ASP LEU LEU ALA ALA SEQRES 9 B 279 ARG THR ASN ILE SER PRO ILE PHE MET ARG TYR ALA PHE SEQRES 10 B 279 LYS LEU ASN LYS GLU SER ALA GLU ARG ILE MET ILE ASN SEQRES 11 B 279 VAL ILE GLU SER CYS GLU ALA LEU VAL ASN ALA PRO SER SEQRES 12 B 279 TRP ASP ALA PHE ILE ALA ALA SER PRO TYR ALA GLU LYS SEQRES 13 B 279 ILE GLN GLN HIS VAL LYS GLU ASP SER GLU LYS ASP GLU SEQRES 14 B 279 LEU LYS ARG GLN GLU ILE LEU ILE ALA LYS THR PHE ASN SEQRES 15 B 279 PHE TYR ASP TYR MET LEU PHE GLN ARG LEU ALA PHE HIS SEQRES 16 B 279 SER GLY ASN GLN ILE TYR GLY LEU ILE PHE ASN GLY LEU SEQRES 17 B 279 LYS LYS LEU TYR ASP ARG VAL GLY SER TYR TYR PHE SER SEQRES 18 B 279 ASN PRO GLN ALA ARG GLU LEU ALA MET GLU PHE TYR ARG SEQRES 19 B 279 GLN LEU LEU ALA VAL CYS GLN SER GLY GLU ARG GLU HIS SEQRES 20 B 279 LEU PRO GLN VAL ILE ARG GLN TYR GLY ILE ALA SER GLY SEQRES 21 B 279 HIS ILE TRP ASN GLN MET LYS MET THR LEU PRO SER ASN SEQRES 22 B 279 PHE THR GLU ASP ASP CYS HET 3VV A 301 67 HET 3VV A 302 67 HET 3VV B 301 67 HET 3VV B 302 67 HETNAM 3VV S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9- HETNAM 2 3VV YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-3, HETNAM 3 3VV 5,9-TRIHYDROXY-8,8-DIMETHYL-3,5-DIOXIDO-10,14-DIOXO-2, HETNAM 4 3VV 4,6-TRIOXA-11,15-DIAZA-3LAMBDA~5~,5LAMBDA~5~- HETNAM 5 3VV DIPHOSPHAHEPTADECAN-17-YL} (9Z)-OCTADEC-9-ENETHIOATE HETNAM 6 3VV (NON-PREFERRED NAME) HETSYN 3VV OLEOYL-COA FORMUL 3 3VV 4(C39 H68 N7 O17 P3 S) HELIX 1 AA1 PRO A 8 ASN A 22 1 15 HELIX 2 AA2 GLU A 34 ILE A 41 1 8 HELIX 3 AA3 THR A 47 GLY A 59 1 13 HELIX 4 AA4 SER A 96 ASN A 120 1 25 HELIX 5 AA5 ASN A 120 ASN A 140 1 21 HELIX 6 AA6 SER A 143 SER A 151 1 9 HELIX 7 AA7 TYR A 153 VAL A 161 1 9 HELIX 8 AA8 ASP A 168 HIS A 195 1 28 HELIX 9 AA9 ASN A 198 LEU A 208 1 11 HELIX 10 AB1 LEU A 208 PHE A 220 1 13 HELIX 11 AB2 ASN A 222 GLY A 243 1 22 HELIX 12 AB3 HIS A 247 ASN A 264 1 18 HELIX 13 AB4 ALA B 9 ASN B 22 1 14 HELIX 14 AB5 ALA B 33 GLY B 42 1 10 HELIX 15 AB6 THR B 44 LEU B 55 1 12 HELIX 16 AB7 SER B 96 ASN B 120 1 25 HELIX 17 AB8 ASN B 120 ASN B 140 1 21 HELIX 18 AB9 SER B 143 SER B 151 1 9 HELIX 19 AC1 TYR B 153 VAL B 161 1 9 HELIX 20 AC2 ASP B 168 HIS B 195 1 28 HELIX 21 AC3 ASN B 198 LEU B 208 1 11 HELIX 22 AC4 LEU B 208 PHE B 220 1 13 HELIX 23 AC5 ASN B 222 GLY B 243 1 22 HELIX 24 AC6 HIS B 247 THR B 269 1 23 CISPEP 1 THR A 77 SER A 78 0 12.11 CISPEP 2 ASP A 84 THR A 85 0 -18.26 CISPEP 3 GLU A 92 ASN A 93 0 -10.10 CISPEP 4 THR B 269 LEU B 270 0 12.33 SITE 1 AC1 25 LEU A 101 LEU A 102 ALA A 103 ARG A 105 SITE 2 AC1 25 THR A 106 ILE A 108 SER A 134 ALA A 137 SITE 3 AC1 25 ALA A 150 SER A 151 PRO A 152 ASP A 185 SITE 4 AC1 25 LEU A 208 TYR A 212 GLY A 216 TYR A 219 SITE 5 AC1 25 PHE A 220 ARG A 253 GLY A 256 SER A 259 SITE 6 AC1 25 GLY A 260 TRP A 263 TYR B 115 LYS B 118 SITE 7 AC1 25 ARG B 245 SITE 1 AC2 14 ASN A 130 SER A 134 TYR A 153 LYS A 156 SITE 2 AC2 14 TYR A 184 ARG A 191 PHE A 194 HIS A 195 SITE 3 AC2 14 ILE A 200 GLY A 207 TRP B 21 PRO B 27 SITE 4 AC2 14 ILE B 82 3VV B 302 SITE 1 AC3 19 ILE A 111 ARG A 114 TYR A 115 ILE A 204 SITE 2 AC3 19 ARG A 245 LEU B 101 LEU B 102 ALA B 104 SITE 3 AC3 19 ARG B 105 THR B 106 ILE B 108 PHE B 205 SITE 4 AC3 19 TYR B 212 TYR B 219 ARG B 253 GLY B 256 SITE 5 AC3 19 ILE B 257 SER B 259 GLY B 260 SITE 1 AC4 14 PRO A 27 MET A 75 3VV A 302 ARG B 126 SITE 2 AC4 14 ASN B 130 SER B 134 TYR B 153 TYR B 184 SITE 3 AC4 14 ARG B 191 PHE B 194 HIS B 195 GLN B 199 SITE 4 AC4 14 ILE B 204 LEU B 208 CRYST1 116.920 88.690 62.860 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015908 0.00000