HEADER SUGAR BINDING PROTEIN 28-APR-14 4PF5 TITLE CRYSTAL STRUCTURE OF CONCANAVALIN A COMPLEXED WITH A SYNTHETIC TITLE 2 DERIVATIVE OF HIGH-MANNOSE CHAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONCANAVALIN-A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 164-281, 30-148; COMPND 5 SYNONYM: CON A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA ENSIFORMIS; SOURCE 3 ORGANISM_COMMON: JACK BEAN; SOURCE 4 ORGANISM_TAXID: 3823 KEYWDS SUGAR BINDING PROTEIN, LECTIN, HIGH MANNOSE EXPDTA X-RAY DIFFRACTION AUTHOR P.LAFITE,R.DANIELLOU REVDAT 4 08-MAY-24 4PF5 1 HETSYN REVDAT 3 29-JUL-20 4PF5 1 REMARK LINK SITE REVDAT 2 28-JAN-15 4PF5 1 JRNL REVDAT 1 17-DEC-14 4PF5 0 JRNL AUTH M.FRANCOIS-HEUDE,A.MENDEZ-ARDOY,V.CENDRET,P.LAFITE, JRNL AUTH 2 R.DANIELLOU,C.ORTIZ MELLET,J.M.GARCIA FERNANDEZ,V.MOREAU, JRNL AUTH 3 F.DJEDAINI-PILARD JRNL TITL SYNTHESIS OF HIGH-MANNOSE OLIGOSACCHARIDE ANALOGUES THROUGH JRNL TITL 2 CLICK CHEMISTRY: TRUE FUNCTIONAL MIMICS OF THEIR NATURAL JRNL TITL 3 COUNTERPARTS AGAINST LECTINS? JRNL REF CHEMISTRY V. 21 1978 2015 JRNL REFN ISSN 0947-6539 JRNL PMID 25483029 JRNL DOI 10.1002/CHEM.201405481 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9939 - 4.9143 1.00 2512 149 0.1669 0.2025 REMARK 3 2 4.9143 - 3.9015 1.00 2439 145 0.1424 0.1673 REMARK 3 3 3.9015 - 3.4086 1.00 2398 144 0.1630 0.2270 REMARK 3 4 3.4086 - 3.0971 1.00 2404 144 0.1810 0.2549 REMARK 3 5 3.0971 - 2.8751 1.00 2367 140 0.1815 0.2240 REMARK 3 6 2.8751 - 2.7056 1.00 2394 144 0.1952 0.2339 REMARK 3 7 2.7056 - 2.5702 1.00 2384 142 0.1917 0.2430 REMARK 3 8 2.5702 - 2.4583 1.00 2378 142 0.1969 0.2667 REMARK 3 9 2.4583 - 2.3637 1.00 2360 141 0.2001 0.2670 REMARK 3 10 2.3637 - 2.2821 1.00 2384 142 0.1958 0.2323 REMARK 3 11 2.2821 - 2.2108 1.00 2361 142 0.2060 0.2519 REMARK 3 12 2.2108 - 2.1476 1.00 2370 141 0.2238 0.2878 REMARK 3 13 2.1476 - 2.0910 1.00 2381 142 0.2211 0.2705 REMARK 3 14 2.0910 - 2.0400 1.00 2360 140 0.2103 0.2891 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3755 REMARK 3 ANGLE : 1.212 5123 REMARK 3 CHIRALITY : 0.055 592 REMARK 3 PLANARITY : 0.005 658 REMARK 3 DIHEDRAL : 13.337 1307 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000200403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 93.529 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16600 REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : 0.59400 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, 1,4-DIOXANE, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 62.95050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.34449 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 60.65733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 62.95050 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 36.34449 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 60.65733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 62.95050 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 36.34449 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.65733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 62.95050 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 36.34449 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.65733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 62.95050 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 36.34449 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 60.65733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 62.95050 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 36.34449 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.65733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.68898 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 121.31467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 72.68898 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 121.31467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 72.68898 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 121.31467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 72.68898 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 121.31467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 72.68898 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 121.31467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 72.68898 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 121.31467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMO-4-MER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -72.68898 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -121.31467 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 203 CG OD1 OD2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 67 O HOH A 488 2.13 REMARK 500 O HOH A 484 O HOH A 499 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 78.03 -106.34 REMARK 500 SER B 21 40.61 -85.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 90.9 REMARK 620 3 ASP A 19 OD1 172.0 96.9 REMARK 620 4 HIS A 24 NE2 89.5 86.1 92.8 REMARK 620 5 HOH A 435 O 90.3 93.0 87.5 179.2 REMARK 620 6 HOH A 436 O 88.1 173.7 84.3 87.6 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 51.7 REMARK 620 3 TYR A 12 O 80.6 117.0 REMARK 620 4 ASN A 14 OD1 144.2 164.1 73.0 REMARK 620 5 ASP A 19 OD2 114.6 81.4 85.5 87.3 REMARK 620 6 HOH A 433 O 116.9 80.9 161.3 88.3 92.4 REMARK 620 7 HOH A 434 O 72.1 107.6 89.8 83.9 170.9 89.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 8 OE2 REMARK 620 2 ASP B 10 OD2 91.1 REMARK 620 3 ASP B 19 OD1 172.2 95.7 REMARK 620 4 HIS B 24 NE2 88.7 89.9 95.1 REMARK 620 5 HOH B 423 O 89.4 176.6 84.0 86.8 REMARK 620 6 HOH B 424 O 92.9 94.6 82.8 175.2 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 10 OD2 52.0 REMARK 620 3 TYR B 12 O 74.6 111.8 REMARK 620 4 ASN B 14 OD1 142.6 164.7 75.8 REMARK 620 5 ASP B 19 OD2 109.7 79.9 82.2 88.3 REMARK 620 6 HOH B 421 O 119.1 79.4 166.3 91.5 92.4 REMARK 620 7 HOH B 422 O 73.8 109.3 89.2 83.5 169.4 94.5 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D4K RELATED DB: PDB REMARK 900 CONA COMPLEXED WITH A TRIMANNOSIDE ANALOGUE (CRYSTALLIZED UNDER THE REMARK 900 SAME CONDITIONS). DBREF 4PF5 A 1 118 UNP P02866 CONA_CANEN 164 281 DBREF 4PF5 A 119 237 UNP P02866 CONA_CANEN 30 148 DBREF 4PF5 B 1 118 UNP P02866 CONA_CANEN 164 281 DBREF 4PF5 B 119 237 UNP P02866 CONA_CANEN 30 148 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 A 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN SEQRES 1 B 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 B 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 B 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 B 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 B 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 B 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 B 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 B 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 B 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 B 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 B 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 B 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 B 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 B 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 B 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 B 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 B 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 B 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 B 237 ASP ALA ASN HET MN A 301 1 HET MN A 302 1 HET M3N A 303 18 HET EDO A 304 4 HET M3N B 301 18 HET MN B 302 1 HET MN B 303 1 HET EDO B 304 4 HETNAM MN MANGANESE (II) ION HETNAM M3N 4-(HYDROXYMETHYL)-1-(ALPHA-D-MANNOPYRANOSYL)-1H-1,2,3- HETNAM 2 M3N TRIAZOLE HETNAM EDO 1,2-ETHANEDIOL HETSYN M3N 4-(HYDROXYMETHYL)-1-(ALPHA-D-MANNOSYL)-1H-1,2,3- HETSYN 2 M3N TRIAZOLE; 4-(HYDROXYMETHYL)-1-(D-MANNOSYL)-1H-1,2,3- HETSYN 3 M3N TRIAZOLE; 4-(HYDROXYMETHYL)-1-(MANNOSYL)-1H-1,2,3- HETSYN 4 M3N TRIAZOLE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN 4(MN 2+) FORMUL 5 M3N 2(C9 H15 N3 O6) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 11 HOH *229(H2 O) HELIX 1 AA1 ASN A 14 GLY A 18 5 5 HELIX 2 AA2 ASP A 80 VAL A 84 5 5 HELIX 3 AA3 THR A 226 LEU A 230 5 5 HELIX 4 AA4 ASN B 14 GLY B 18 5 5 HELIX 5 AA5 ASP B 80 VAL B 84 5 5 HELIX 6 AA6 THR B 150 GLY B 152 5 3 HELIX 7 AA7 THR B 226 LEU B 230 5 5 SHEET 1 AA1 7 LYS A 36 LYS A 39 0 SHEET 2 AA1 7 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 AA1 7 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA1 7 GLY A 209 SER A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 AA1 7 TRP A 88 SER A 96 -1 N GLY A 92 O PHE A 213 SHEET 6 AA1 7 VAL A 170 PHE A 175 -1 O PHE A 175 N VAL A 91 SHEET 7 AA1 7 LEU A 140 GLY A 144 -1 N ILE A 141 O LEU A 174 SHEET 1 AA2 6 LYS A 36 LYS A 39 0 SHEET 2 AA2 6 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 AA2 6 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA2 6 GLY A 209 SER A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 AA2 6 TRP A 88 SER A 96 -1 N GLY A 92 O PHE A 213 SHEET 6 AA2 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 AA312 ALA A 73 ASP A 78 0 SHEET 2 AA312 ARG A 60 SER A 66 -1 N LEU A 61 O TYR A 77 SHEET 3 AA312 VAL A 47 ASN A 55 -1 N ILE A 53 O SER A 62 SHEET 4 AA312 SER A 190 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 AA312 THR A 105 LYS A 116 -1 N THR A 112 O GLU A 192 SHEET 6 AA312 THR A 123 PHE A 130 -1 O PHE A 130 N TRP A 109 SHEET 7 AA312 THR B 123 PHE B 130 -1 O HIS B 127 N HIS A 127 SHEET 8 AA312 THR B 105 SER B 117 -1 N TRP B 109 O PHE B 130 SHEET 9 AA312 ALA B 186 LEU B 198 -1 O VAL B 188 N LYS B 116 SHEET 10 AA312 VAL B 47 ASN B 55 -1 N GLY B 48 O PHE B 197 SHEET 11 AA312 ARG B 60 SER B 66 -1 O VAL B 64 N HIS B 51 SHEET 12 AA312 ALA B 73 ASP B 78 -1 O TYR B 77 N LEU B 61 SHEET 1 AA4 8 THR A 147 THR A 148 0 SHEET 2 AA4 8 LEU A 154 GLU A 155 -1 O GLU A 155 N THR A 147 SHEET 3 AA4 8 THR A 105 LYS A 116 -1 N ILE A 106 O LEU A 154 SHEET 4 AA4 8 THR A 123 PHE A 130 -1 O PHE A 130 N TRP A 109 SHEET 5 AA4 8 THR B 123 PHE B 130 -1 O HIS B 127 N HIS A 127 SHEET 6 AA4 8 THR B 105 SER B 117 -1 N TRP B 109 O PHE B 130 SHEET 7 AA4 8 LEU B 154 GLU B 155 -1 O LEU B 154 N ILE B 106 SHEET 8 AA4 8 THR B 147 THR B 148 -1 N THR B 147 O GLU B 155 SHEET 1 AA5 7 LYS B 36 LYS B 39 0 SHEET 2 AA5 7 HIS B 24 ILE B 29 -1 N ILE B 27 O LYS B 36 SHEET 3 AA5 7 ILE B 4 ASP B 10 -1 N ALA B 6 O ASP B 28 SHEET 4 AA5 7 GLY B 209 SER B 215 -1 O ILE B 210 N LEU B 9 SHEET 5 AA5 7 TRP B 88 SER B 96 -1 N SER B 94 O ALA B 211 SHEET 6 AA5 7 VAL B 170 PHE B 175 -1 O ALA B 173 N LEU B 93 SHEET 7 AA5 7 LEU B 140 GLY B 144 -1 N ILE B 141 O LEU B 174 SHEET 1 AA6 6 LYS B 36 LYS B 39 0 SHEET 2 AA6 6 HIS B 24 ILE B 29 -1 N ILE B 27 O LYS B 36 SHEET 3 AA6 6 ILE B 4 ASP B 10 -1 N ALA B 6 O ASP B 28 SHEET 4 AA6 6 GLY B 209 SER B 215 -1 O ILE B 210 N LEU B 9 SHEET 5 AA6 6 TRP B 88 SER B 96 -1 N SER B 94 O ALA B 211 SHEET 6 AA6 6 VAL B 179 HIS B 180 -1 O VAL B 179 N VAL B 89 LINK OE2 GLU A 8 MN MN A 301 1555 1555 2.34 LINK OD2 ASP A 10 MN MN A 301 1555 1555 2.17 LINK OD1 ASP A 10 MN MN A 302 1555 1555 2.47 LINK OD2 ASP A 10 MN MN A 302 1555 1555 2.51 LINK O TYR A 12 MN MN A 302 1555 1555 2.42 LINK OD1 ASN A 14 MN MN A 302 1555 1555 2.52 LINK OD1 ASP A 19 MN MN A 301 1555 1555 2.35 LINK OD2 ASP A 19 MN MN A 302 1555 1555 2.42 LINK NE2 HIS A 24 MN MN A 301 1555 1555 2.39 LINK MN MN A 301 O HOH A 435 1555 1555 2.45 LINK MN MN A 301 O HOH A 436 1555 1555 2.29 LINK MN MN A 302 O HOH A 433 1555 1555 2.47 LINK MN MN A 302 O HOH A 434 1555 1555 2.43 LINK OE2 GLU B 8 MN MN B 302 1555 1555 2.40 LINK OD2 ASP B 10 MN MN B 302 1555 1555 2.24 LINK OD1 ASP B 10 MN MN B 303 1555 1555 2.52 LINK OD2 ASP B 10 MN MN B 303 1555 1555 2.44 LINK O TYR B 12 MN MN B 303 1555 1555 2.39 LINK OD1 ASN B 14 MN MN B 303 1555 1555 2.48 LINK OD1 ASP B 19 MN MN B 302 1555 1555 2.44 LINK OD2 ASP B 19 MN MN B 303 1555 1555 2.42 LINK NE2 HIS B 24 MN MN B 302 1555 1555 2.43 LINK MN MN B 302 O HOH B 423 1555 1555 2.30 LINK MN MN B 302 O HOH B 424 1555 1555 2.40 LINK MN MN B 303 O HOH B 421 1555 1555 2.52 LINK MN MN B 303 O HOH B 422 1555 1555 2.44 CISPEP 1 ALA A 207 ASP A 208 0 4.47 CISPEP 2 ALA B 207 ASP B 208 0 2.87 CRYST1 125.901 125.901 181.972 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007943 0.004586 0.000000 0.00000 SCALE2 0.000000 0.009171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005495 0.00000