HEADER LYASE 30-APR-14 4PFM TITLE SHEWANELLA BENTHICA DHDPS WITH LYSINE AND PYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HTPA SYNTHASE; COMPND 5 EC: 4.3.3.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA BENTHICA KT99; SOURCE 3 ORGANISM_TAXID: 314608; SOURCE 4 GENE: DAPA, KT99_11964; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIHYDRODIPICOLINATE SYNTHASE, LYSINE BIOSYNTHESIS, TIM BARREL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.WUBBEN,J.J.PAXMAN,C.DOGOVSKI,S.PANJIKAR,M.A.PERUGINI REVDAT 4 29-NOV-23 4PFM 1 REMARK REVDAT 3 27-SEP-23 4PFM 1 REMARK LINK REVDAT 2 22-NOV-17 4PFM 1 SOURCE REMARK REVDAT 1 06-MAY-15 4PFM 0 JRNL AUTH J.M.WUBBEN,J.J.PAXMAN,C.DOGOVSKI,S.PANJIKAR,M.A.PERUGINI JRNL TITL DEFINING A MOLECULAR DETERMINANT OF LYSINE-MEDIATED JRNL TITL 2 ALLOSTERIC INHIBITION OF DHDPS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 37140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1963 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2585 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.73000 REMARK 3 B22 (A**2) : -2.41000 REMARK 3 B33 (A**2) : -4.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.526 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4521 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6147 ; 1.966 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 592 ; 6.523 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;43.085 ;25.783 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 744 ;16.767 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.471 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 744 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3334 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2961 ; 1.134 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4764 ; 2.103 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1560 ; 3.432 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1383 ; 5.673 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39241 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.327 REMARK 200 RESOLUTION RANGE LOW (A) : 47.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID 4ICN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22%(W/V) PEG 3350, 100MM TRISODIUM REMARK 280 CITRATE-CITRIC ACID (PH 5.5), VAPOR DIFFUSION, HANGING DROP REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.13650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.93400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.96450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.93400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.13650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.96450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 47 CG GLU A 47 CD 0.094 REMARK 500 VAL A 160 C KPI A 161 N 0.178 REMARK 500 GLU B 146 CG GLU B 146 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 88 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 KPI A 161 O - C - N ANGL. DEV. = -12.2 DEGREES REMARK 500 LEU B 51 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 107 -43.21 76.67 REMARK 500 ASN A 207 -38.90 -34.52 REMARK 500 VAL A 293 113.75 95.18 REMARK 500 SER B 68 52.46 35.50 REMARK 500 ASN B 77 28.91 -140.84 REMARK 500 TYR B 107 -42.27 77.32 REMARK 500 ASN B 207 0.14 -69.62 REMARK 500 ARG B 290 33.12 73.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 203 SER A 204 -149.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 152 O REMARK 620 2 VAL A 154 O 80.6 REMARK 620 3 ILE A 157 O 113.6 84.9 REMARK 620 4 HOH A 538 O 104.0 169.4 101.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 152 O REMARK 620 2 VAL B 154 O 77.4 REMARK 620 3 ILE B 157 O 112.2 90.2 REMARK 620 4 HOH B 540 O 95.0 170.8 97.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LYS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LYS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LYS B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 304 DBREF 4PFM A 0 294 UNP A9DKW4 A9DKW4_9GAMM 16 310 DBREF 4PFM B 0 294 UNP A9DKW4 A9DKW4_9GAMM 16 310 SEQADV 4PFM SER A 68 UNP A9DKW4 ALA 84 CONFLICT SEQADV 4PFM VAL A 97 UNP A9DKW4 LEU 113 CONFLICT SEQADV 4PFM ALA A 98 UNP A9DKW4 VAL 114 CONFLICT SEQADV 4PFM THR A 120 UNP A9DKW4 LYS 136 CONFLICT SEQADV 4PFM VAL A 167 UNP A9DKW4 LEU 183 CONFLICT SEQADV 4PFM ALA A 168 UNP A9DKW4 ASP 184 CONFLICT SEQADV 4PFM ASP A 175 UNP A9DKW4 GLU 191 CONFLICT SEQADV 4PFM ILE A 209 UNP A9DKW4 LEU 225 CONFLICT SEQADV 4PFM SER B 68 UNP A9DKW4 ALA 84 CONFLICT SEQADV 4PFM VAL B 97 UNP A9DKW4 LEU 113 CONFLICT SEQADV 4PFM ALA B 98 UNP A9DKW4 VAL 114 CONFLICT SEQADV 4PFM THR B 120 UNP A9DKW4 LYS 136 CONFLICT SEQADV 4PFM VAL B 167 UNP A9DKW4 LEU 183 CONFLICT SEQADV 4PFM ALA B 168 UNP A9DKW4 ASP 184 CONFLICT SEQADV 4PFM ASP B 175 UNP A9DKW4 GLU 191 CONFLICT SEQADV 4PFM ILE B 209 UNP A9DKW4 LEU 225 CONFLICT SEQRES 1 A 295 HIS MET ILE ASN GLY SER ILE VAL ALA LEU ILE THR PRO SEQRES 2 A 295 LEU ASN SER ASP GLY THR VAL ASP TYR THR SER LEU GLU SEQRES 3 A 295 LYS LEU VAL GLU TYR HIS ILE THR GLU GLY THR ASP ALA SEQRES 4 A 295 ILE VAL ALA VAL GLY THR THR GLY GLU SER ALA THR LEU SEQRES 5 A 295 PRO ILE SER GLU HIS ILE ALA VAL VAL GLY GLN THR VAL SEQRES 6 A 295 LYS PHE ALA SER GLY ARG ILE PRO VAL ILE GLY GLY ASN SEQRES 7 A 295 GLY ALA ASN ALA THR ALA GLU ALA ILE GLU LEU THR LYS SEQRES 8 A 295 ALA GLN ASN LYS LEU GLY VAL ALA ALA MET LEU GLY VAL SEQRES 9 A 295 THR PRO TYR TYR ASN LYS PRO SER PRO LYS GLY LEU ILE SEQRES 10 A 295 ALA HIS TYR THR ALA VAL ALA ALA SER THR ASP ILE PRO SEQRES 11 A 295 GLN ILE LEU TYR ASN VAL PRO GLY ARG THR ALA VAL ASP SEQRES 12 A 295 MET LEU PRO GLU THR ILE ALA GLN LEU VAL GLU VAL PRO SEQRES 13 A 295 ASN ILE ILE GLY VAL KPI ASP ALA THR GLY ASP VAL ALA SEQRES 14 A 295 ARG VAL LYS GLN LEU ARG ASP LEU CYS GLY ASN ASP PHE SEQRES 15 A 295 LEU LEU TYR SER GLY ASP ASP ALA THR ALA ARG GLU PHE SEQRES 16 A 295 LEU THR LEU GLY GLY ASP GLY VAL ILE SER VAL ALA ASN SEQRES 17 A 295 ASN ILE VAL PRO LYS LEU PHE LYS LEU MET CYS ASP ALA SEQRES 18 A 295 ALA LEU ALA GLY ASP THR GLN ALA ALA MET ALA ALA GLU SEQRES 19 A 295 ASP GLN ILE LYS GLY LEU PHE SER ALA LEU PHE CYS GLU SEQRES 20 A 295 ALA ASN PRO ILE PRO VAL LYS TRP ALA ALA HIS LYS MET SEQRES 21 A 295 GLY LEU ILE SER GLN GLY ASP ILE ARG LEU PRO LEU THR SEQRES 22 A 295 GLU LEU SER THR GLU PHE HIS GLY LEU LEU LEU ASP ALA SEQRES 23 A 295 MET LYS ASN ALA ARG ILE GLU VAL LYS SEQRES 1 B 295 HIS MET ILE ASN GLY SER ILE VAL ALA LEU ILE THR PRO SEQRES 2 B 295 LEU ASN SER ASP GLY THR VAL ASP TYR THR SER LEU GLU SEQRES 3 B 295 LYS LEU VAL GLU TYR HIS ILE THR GLU GLY THR ASP ALA SEQRES 4 B 295 ILE VAL ALA VAL GLY THR THR GLY GLU SER ALA THR LEU SEQRES 5 B 295 PRO ILE SER GLU HIS ILE ALA VAL VAL GLY GLN THR VAL SEQRES 6 B 295 LYS PHE ALA SER GLY ARG ILE PRO VAL ILE GLY GLY ASN SEQRES 7 B 295 GLY ALA ASN ALA THR ALA GLU ALA ILE GLU LEU THR LYS SEQRES 8 B 295 ALA GLN ASN LYS LEU GLY VAL ALA ALA MET LEU GLY VAL SEQRES 9 B 295 THR PRO TYR TYR ASN LYS PRO SER PRO LYS GLY LEU ILE SEQRES 10 B 295 ALA HIS TYR THR ALA VAL ALA ALA SER THR ASP ILE PRO SEQRES 11 B 295 GLN ILE LEU TYR ASN VAL PRO GLY ARG THR ALA VAL ASP SEQRES 12 B 295 MET LEU PRO GLU THR ILE ALA GLN LEU VAL GLU VAL PRO SEQRES 13 B 295 ASN ILE ILE GLY VAL KPI ASP ALA THR GLY ASP VAL ALA SEQRES 14 B 295 ARG VAL LYS GLN LEU ARG ASP LEU CYS GLY ASN ASP PHE SEQRES 15 B 295 LEU LEU TYR SER GLY ASP ASP ALA THR ALA ARG GLU PHE SEQRES 16 B 295 LEU THR LEU GLY GLY ASP GLY VAL ILE SER VAL ALA ASN SEQRES 17 B 295 ASN ILE VAL PRO LYS LEU PHE LYS LEU MET CYS ASP ALA SEQRES 18 B 295 ALA LEU ALA GLY ASP THR GLN ALA ALA MET ALA ALA GLU SEQRES 19 B 295 ASP GLN ILE LYS GLY LEU PHE SER ALA LEU PHE CYS GLU SEQRES 20 B 295 ALA ASN PRO ILE PRO VAL LYS TRP ALA ALA HIS LYS MET SEQRES 21 B 295 GLY LEU ILE SER GLN GLY ASP ILE ARG LEU PRO LEU THR SEQRES 22 B 295 GLU LEU SER THR GLU PHE HIS GLY LEU LEU LEU ASP ALA SEQRES 23 B 295 MET LYS ASN ALA ARG ILE GLU VAL LYS MODRES 4PFM KPI A 161 LYS MODIFIED RESIDUE MODRES 4PFM KPI B 161 LYS MODIFIED RESIDUE HET KPI A 161 14 HET KPI B 161 14 HET LYS A 301 10 HET LYS A 302 10 HET GOL A 303 6 HET NA A 304 1 HET LYS B 301 10 HET FLC B 302 13 HET GOL B 303 6 HET NA B 304 1 HETNAM KPI (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE) HETNAM 2 KPI AMINO]HEXANOIC ACID HETNAM LYS LYSINE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM FLC CITRATE ANION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KPI 2(C9 H16 N2 O4) FORMUL 3 LYS 3(C6 H15 N2 O2 1+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 NA 2(NA 1+) FORMUL 8 FLC C6 H5 O7 3- FORMUL 11 HOH *315(H2 O) HELIX 1 AA1 ASP A 20 GLY A 35 1 16 HELIX 2 AA2 GLU A 47 LEU A 51 5 5 HELIX 3 AA3 PRO A 52 SER A 68 1 17 HELIX 4 AA4 ALA A 81 ASN A 93 1 13 HELIX 5 AA5 SER A 111 SER A 125 1 15 HELIX 6 AA6 VAL A 135 ALA A 140 1 6 HELIX 7 AA7 LEU A 144 ALA A 149 1 6 HELIX 8 AA8 GLN A 150 VAL A 152 5 3 HELIX 9 AA9 ALA A 168 GLY A 178 1 11 HELIX 10 AB1 ASP A 187 LEU A 197 1 11 HELIX 11 AB2 VAL A 205 ILE A 209 5 5 HELIX 12 AB3 VAL A 210 GLY A 224 1 15 HELIX 13 AB4 ASP A 225 LYS A 237 1 13 HELIX 14 AB5 GLY A 238 LEU A 243 1 6 HELIX 15 AB6 PRO A 249 MET A 259 1 11 HELIX 16 AB7 SER A 275 GLU A 277 5 3 HELIX 17 AB8 PHE A 278 ALA A 289 1 12 HELIX 18 AB9 ASP B 20 GLY B 35 1 16 HELIX 19 AC1 GLY B 43 LEU B 51 5 9 HELIX 20 AC2 PRO B 52 SER B 68 1 17 HELIX 21 AC3 ALA B 81 ASN B 93 1 13 HELIX 22 AC4 SER B 111 ALA B 124 1 14 HELIX 23 AC5 VAL B 135 ALA B 140 1 6 HELIX 24 AC6 LEU B 144 ALA B 149 1 6 HELIX 25 AC7 GLN B 150 VAL B 152 5 3 HELIX 26 AC8 ALA B 168 GLY B 178 1 11 HELIX 27 AC9 ASP B 187 LEU B 197 1 11 HELIX 28 AD1 VAL B 205 ILE B 209 5 5 HELIX 29 AD2 VAL B 210 ALA B 223 1 14 HELIX 30 AD3 ASP B 225 LYS B 237 1 13 HELIX 31 AD4 GLY B 238 LEU B 243 1 6 HELIX 32 AD5 PRO B 249 MET B 259 1 11 HELIX 33 AD6 SER B 275 GLU B 277 5 3 HELIX 34 AD7 PHE B 278 ALA B 289 1 12 SHEET 1 AA1 9 GLY A 4 LEU A 9 0 SHEET 2 AA1 9 ALA A 38 ALA A 41 1 O VAL A 40 N VAL A 7 SHEET 3 AA1 9 VAL A 73 GLY A 76 1 O ILE A 74 N ILE A 39 SHEET 4 AA1 9 ALA A 99 VAL A 103 1 O LEU A 101 N GLY A 75 SHEET 5 AA1 9 GLN A 130 ASN A 134 1 O ILE A 131 N GLY A 102 SHEET 6 AA1 9 ILE A 157 ASP A 162 1 O KPI A 161 N LEU A 132 SHEET 7 AA1 9 LEU A 182 SER A 185 1 O TYR A 184 N VAL A 160 SHEET 8 AA1 9 GLY A 201 SER A 204 1 O ILE A 203 N SER A 185 SHEET 9 AA1 9 GLY A 4 LEU A 9 1 N ILE A 6 O VAL A 202 SHEET 1 AA2 9 GLY B 4 ALA B 8 0 SHEET 2 AA2 9 ALA B 38 ALA B 41 1 O VAL B 40 N VAL B 7 SHEET 3 AA2 9 VAL B 73 GLY B 76 1 O ILE B 74 N ILE B 39 SHEET 4 AA2 9 ALA B 99 VAL B 103 1 O ALA B 99 N GLY B 75 SHEET 5 AA2 9 GLN B 130 ASN B 134 1 O ILE B 131 N MET B 100 SHEET 6 AA2 9 ILE B 157 ASP B 162 1 O GLY B 159 N LEU B 132 SHEET 7 AA2 9 LEU B 182 SER B 185 1 O LEU B 182 N ILE B 158 SHEET 8 AA2 9 GLY B 201 SER B 204 1 O ILE B 203 N SER B 185 SHEET 9 AA2 9 GLY B 4 ALA B 8 1 N ILE B 6 O VAL B 202 LINK C VAL A 160 N KPI A 161 1555 1555 1.51 LINK C KPI A 161 N ASP A 162 1555 1555 1.38 LINK C VAL B 160 N KPI B 161 1555 1555 1.41 LINK C KPI B 161 N ASP B 162 1555 1555 1.31 LINK O VAL A 152 NA NA A 304 1555 1555 2.43 LINK O VAL A 154 NA NA A 304 1555 1555 2.66 LINK O ILE A 157 NA NA A 304 1555 1555 2.48 LINK NA NA A 304 O HOH A 538 1555 1555 2.33 LINK O VAL B 152 NA NA B 304 1555 1555 2.44 LINK O VAL B 154 NA NA B 304 1555 1555 2.66 LINK O ILE B 157 NA NA B 304 1555 1555 2.45 LINK NA NA B 304 O HOH B 540 1555 1555 2.56 CISPEP 1 ASN A 248 PRO A 249 0 6.09 CISPEP 2 LEU A 269 PRO A 270 0 14.32 CISPEP 3 VAL A 293 LYS A 294 0 0.97 CISPEP 4 ASN B 248 PRO B 249 0 3.15 CISPEP 5 LEU B 269 PRO B 270 0 6.55 SITE 1 AC1 10 SER A 48 ALA A 49 LEU A 51 HIS A 56 SITE 2 AC1 10 TYR A 106 LYS A 302 HOH A 428 HOH A 470 SITE 3 AC1 10 ASN B 80 GLU B 84 SITE 1 AC2 9 ASN A 80 GLU A 84 LYS A 301 HOH A 403 SITE 2 AC2 9 SER B 48 ALA B 49 LEU B 51 HIS B 56 SITE 3 AC2 9 TYR B 106 SITE 1 AC3 4 GLU A 146 ASP A 166 ARG A 169 GLN A 172 SITE 1 AC4 4 VAL A 152 VAL A 154 ILE A 157 HOH A 538 SITE 1 AC5 4 PRO A 52 ALA B 81 GLU B 84 GLU B 87 SITE 1 AC6 3 TRP B 254 HIS B 279 HOH B 413 SITE 1 AC7 1 LYS B 94 SITE 1 AC8 5 VAL B 152 VAL B 154 PRO B 155 ILE B 157 SITE 2 AC8 5 HOH B 540 CRYST1 74.273 83.929 143.868 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013464 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006951 0.00000