HEADER TRANSFERASE/TRANSFERASE INHIBITOR 04-MAY-14 4PH4 TITLE THE CRYSTAL STRUCTURE OF HUMAN VPS34 IN COMPLEX WITH PIK-III COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT TYPE 3; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 293-887; COMPND 5 SYNONYM: PTDINS-3-KINASE TYPE 3,PHOSPHATIDYLINOSITOL 3-KINASE P100 COMPND 6 SUBUNIT,PHOSPHOINOSITIDE-3-KINASE CLASS 3,HVPS34; COMPND 7 EC: 2.7.1.137; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIK3C3, VPS34; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS VPS34, AUTOPHAGY, CLASS III, PHOSPHATIDYLINOSITOL-3-KINASE, PIK3C3, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.S.KNAPP,R.A.ELLING REVDAT 4 27-DEC-23 4PH4 1 SOURCE KEYWDS REMARK REVDAT 3 12-NOV-14 4PH4 1 JRNL REVDAT 2 05-NOV-14 4PH4 1 JRNL REVDAT 1 29-OCT-14 4PH4 0 JRNL AUTH W.E.DOWDLE,B.NYFELER,J.NAGEL,R.A.ELLING,S.LIU, JRNL AUTH 2 E.TRIANTAFELLOW,S.MENON,Z.WANG,A.HONDA,G.PARDEE,J.CANTWELL, JRNL AUTH 3 C.LUU,I.CORNELLA-TARACIDO,E.HARRINGTON,P.FEKKES,H.LEI, JRNL AUTH 4 Q.FANG,M.E.DIGAN,D.BURDICK,A.F.POWERS,S.B.HELLIWELL, JRNL AUTH 5 S.D'AQUIN,J.BASTIEN,H.WANG,D.WIEDERSCHAIN,J.KUERTH, JRNL AUTH 6 P.BERGMAN,D.SCHWALB,J.THOMAS,S.UGWONALI,F.HARBINSKI, JRNL AUTH 7 J.TALLARICO,C.J.WILSON,V.E.MYER,J.A.PORTER,D.E.BUSSIERE, JRNL AUTH 8 P.M.FINAN,M.A.LABOW,X.MAO,L.G.HAMANN,B.D.MANNING,R.A.VALDEZ, JRNL AUTH 9 T.NICHOLSON,M.SCHIRLE,M.S.KNAPP,E.P.KEANEY,L.O.MURPHY JRNL TITL SELECTIVE VPS34 INHIBITOR BLOCKS AUTOPHAGY AND UNCOVERS A JRNL TITL 2 ROLE FOR NCOA4 IN FERRITIN DEGRADATION AND IRON HOMEOSTASIS JRNL TITL 3 IN VIVO. JRNL REF NAT.CELL BIOL. V. 16 1069 2014 JRNL REFN ISSN 1465-7392 JRNL PMID 25327288 JRNL DOI 10.1038/NCB3053 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1237 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2938 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2498 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2791 REMARK 3 BIN R VALUE (WORKING SET) : 0.2479 REMARK 3 BIN FREE R VALUE : 0.2792 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.05580 REMARK 3 B22 (A**2) : -2.05580 REMARK 3 B33 (A**2) : 4.11150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.438 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.262 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.423 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.263 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4365 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5912 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1557 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 121 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 639 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4365 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 558 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5143 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.46 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.35 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 9.3866 14.1087 -22.8495 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PH4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) LIQUID REMARK 200 N2 COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29404 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 48.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VPS34 PROTEIN AND PIK-III WERE MIXED REMARK 280 AND INCUBATED ON ICE FOR 1 HR (FINAL PIK-III CONCENTRATION WAS 1 REMARK 280 MM). PRIOR TO CRYSTALLIZATION, THE MIXTURE WAS PASSED THROUGH A REMARK 280 0.2 UM FILTER. THE PROTEIN:LIGAND COMPLEX WAS CRYSTALLIZED USING REMARK 280 THE HANGING DROP VAPOR DIFFUSION METHOD IN NEXTAL PLATES: 6 UL REMARK 280 OF PROTEIN SOLUTION WAS MIXED WITH 4 UL OF PRECIPITANT, WHICH REMARK 280 CONSISTED OF 20% (W/V) PEG 3350, 100 MM BIS-TRIS PROPANE, AND REMARK 280 200 MM NA-K-PHOSPHATE. THE RESULTING DROP WAS SUSPENDED OVER A REMARK 280 RESERVOIR OF 0.3 ML OF PRECIPITANT AND SEALED WITH A SCREW CAP. REMARK 280 THE CRYSTALS GREW AT 30 DEGC IN APPROXIMATELY 12-24 HR., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 303.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.12850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.26600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.26600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.56425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.26600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.26600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.69275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.26600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.26600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.56425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.26600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.26600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 109.69275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.12850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 263 REMARK 465 SER B 264 REMARK 465 TYR B 265 REMARK 465 TYR B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 ASP B 273 REMARK 465 TYR B 274 REMARK 465 ASP B 275 REMARK 465 ILE B 276 REMARK 465 PRO B 277 REMARK 465 THR B 278 REMARK 465 THR B 279 REMARK 465 GLU B 280 REMARK 465 ASN B 281 REMARK 465 LEU B 282 REMARK 465 TYR B 283 REMARK 465 PHE B 284 REMARK 465 GLN B 285 REMARK 465 GLY B 286 REMARK 465 ALA B 287 REMARK 465 MET B 288 REMARK 465 GLY B 289 REMARK 465 THR B 418 REMARK 465 LYS B 419 REMARK 465 LYS B 420 REMARK 465 ASP B 421 REMARK 465 SER B 422 REMARK 465 GLN B 423 REMARK 465 SER B 424 REMARK 465 SER B 425 REMARK 465 VAL B 426 REMARK 465 SER B 427 REMARK 465 GLU B 428 REMARK 465 ASN B 429 REMARK 465 VAL B 430 REMARK 465 SER B 431 REMARK 465 ASN B 432 REMARK 465 SER B 433 REMARK 465 GLY B 434 REMARK 465 ILE B 435 REMARK 465 ASN B 436 REMARK 465 SER B 437 REMARK 465 ALA B 438 REMARK 465 GLU B 439 REMARK 465 ILE B 440 REMARK 465 ASP B 441 REMARK 465 SER B 442 REMARK 465 SER B 443 REMARK 465 GLN B 444 REMARK 465 ILE B 445 REMARK 465 ILE B 446 REMARK 465 THR B 447 REMARK 465 SER B 448 REMARK 465 PRO B 449 REMARK 465 LEU B 450 REMARK 465 PRO B 451 REMARK 465 SER B 452 REMARK 465 VAL B 453 REMARK 465 SER B 454 REMARK 465 SER B 455 REMARK 465 PRO B 456 REMARK 465 PRO B 457 REMARK 465 PRO B 458 REMARK 465 ALA B 459 REMARK 465 SER B 460 REMARK 465 LYS B 461 REMARK 465 THR B 462 REMARK 465 LYS B 463 REMARK 465 GLU B 464 REMARK 465 VAL B 465 REMARK 465 PRO B 466 REMARK 465 ASP B 467 REMARK 465 GLY B 468 REMARK 465 GLU B 469 REMARK 465 ASN B 470 REMARK 465 ALA B 872 REMARK 465 ALA B 873 REMARK 465 VAL B 874 REMARK 465 VAL B 875 REMARK 465 GLU B 876 REMARK 465 GLN B 877 REMARK 465 ILE B 878 REMARK 465 HIS B 879 REMARK 465 LYS B 880 REMARK 465 PHE B 881 REMARK 465 ALA B 882 REMARK 465 GLN B 883 REMARK 465 TYR B 884 REMARK 465 TRP B 885 REMARK 465 ARG B 886 REMARK 465 LYS B 887 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 292 CG1 CG2 CD1 REMARK 470 ARG B 293 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 295 CG CD OE1 NE2 REMARK 470 LEU B 296 CG CD1 CD2 REMARK 470 LYS B 318 CG CD CE NZ REMARK 470 TYR B 322 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 328 CG CD CE NZ REMARK 470 LYS B 354 CG CD CE NZ REMARK 470 LEU B 471 CG CD1 CD2 REMARK 470 ARG B 509 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 530 CG CD CE NZ REMARK 470 LYS B 771 CG CD CE NZ REMARK 470 GLU B 785 CG CD OE1 OE2 REMARK 470 GLN B 791 CG CD OE1 NE2 REMARK 470 GLU B 797 CG CD OE1 OE2 REMARK 470 LYS B 800 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 402 -8.84 -56.08 REMARK 500 GLU B 472 77.64 58.34 REMARK 500 ASP B 503 107.40 -51.27 REMARK 500 ASP B 510 74.96 -156.07 REMARK 500 ASP B 532 -178.33 -65.55 REMARK 500 LEU B 590 88.87 -54.04 REMARK 500 GLU B 596 89.39 -151.98 REMARK 500 ASP B 627 31.00 -94.78 REMARK 500 THR B 668 77.58 -118.22 REMARK 500 ASP B 761 87.44 62.04 REMARK 500 PHE B 762 55.79 -101.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2UG B 902 DBREF 4PH4 B 293 887 UNP Q8NEB9 PK3C3_HUMAN 293 887 SEQADV 4PH4 MET B 263 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 SER B 264 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 TYR B 265 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 TYR B 266 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 HIS B 267 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 HIS B 268 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 HIS B 269 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 HIS B 270 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 HIS B 271 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 HIS B 272 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 ASP B 273 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 TYR B 274 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 ASP B 275 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 ILE B 276 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 PRO B 277 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 THR B 278 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 THR B 279 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 GLU B 280 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 ASN B 281 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 LEU B 282 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 TYR B 283 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 PHE B 284 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 GLN B 285 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 GLY B 286 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 ALA B 287 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 MET B 288 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 GLY B 289 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 SER B 290 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 GLY B 291 UNP Q8NEB9 EXPRESSION TAG SEQADV 4PH4 ILE B 292 UNP Q8NEB9 EXPRESSION TAG SEQRES 1 B 625 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 625 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 B 625 GLY SER GLY ILE ARG ASP GLN LEU ASN ILE ILE VAL SER SEQRES 4 B 625 TYR PRO PRO THR LYS GLN LEU THR TYR GLU GLU GLN ASP SEQRES 5 B 625 LEU VAL TRP LYS PHE ARG TYR TYR LEU THR ASN GLN GLU SEQRES 6 B 625 LYS ALA LEU THR LYS PHE LEU LYS CYS VAL ASN TRP ASP SEQRES 7 B 625 LEU PRO GLN GLU ALA LYS GLN ALA LEU GLU LEU LEU GLY SEQRES 8 B 625 LYS TRP LYS PRO MET ASP VAL GLU ASP SER LEU GLU LEU SEQRES 9 B 625 LEU SER SER HIS TYR THR ASN PRO THR VAL ARG ARG TYR SEQRES 10 B 625 ALA VAL ALA ARG LEU ARG GLN ALA ASP ASP GLU ASP LEU SEQRES 11 B 625 LEU MET TYR LEU LEU GLN LEU VAL GLN ALA LEU LYS TYR SEQRES 12 B 625 GLU ASN PHE ASP ASP ILE LYS ASN GLY LEU GLU PRO THR SEQRES 13 B 625 LYS LYS ASP SER GLN SER SER VAL SER GLU ASN VAL SER SEQRES 14 B 625 ASN SER GLY ILE ASN SER ALA GLU ILE ASP SER SER GLN SEQRES 15 B 625 ILE ILE THR SER PRO LEU PRO SER VAL SER SER PRO PRO SEQRES 16 B 625 PRO ALA SER LYS THR LYS GLU VAL PRO ASP GLY GLU ASN SEQRES 17 B 625 LEU GLU GLN ASP LEU CYS THR PHE LEU ILE SER ARG ALA SEQRES 18 B 625 CYS LYS ASN SER THR LEU ALA ASN TYR LEU TYR TRP TYR SEQRES 19 B 625 VAL ILE VAL GLU CYS GLU ASP GLN ASP THR GLN GLN ARG SEQRES 20 B 625 ASP PRO LYS THR HIS GLU MET TYR LEU ASN VAL MET ARG SEQRES 21 B 625 ARG PHE SER GLN ALA LEU LEU LYS GLY ASP LYS SER VAL SEQRES 22 B 625 ARG VAL MET ARG SER LEU LEU ALA ALA GLN GLN THR PHE SEQRES 23 B 625 VAL ASP ARG LEU VAL HIS LEU MET LYS ALA VAL GLN ARG SEQRES 24 B 625 GLU SER GLY ASN ARG LYS LYS LYS ASN GLU ARG LEU GLN SEQRES 25 B 625 ALA LEU LEU GLY ASP ASN GLU LYS MET ASN LEU SER ASP SEQRES 26 B 625 VAL GLU LEU ILE PRO LEU PRO LEU GLU PRO GLN VAL LYS SEQRES 27 B 625 ILE ARG GLY ILE ILE PRO GLU THR ALA THR LEU PHE LYS SEQRES 28 B 625 SER ALA LEU MET PRO ALA GLN LEU PHE PHE LYS THR GLU SEQRES 29 B 625 ASP GLY GLY LYS TYR PRO VAL ILE PHE LYS HIS GLY ASP SEQRES 30 B 625 ASP LEU ARG GLN ASP GLN LEU ILE LEU GLN ILE ILE SER SEQRES 31 B 625 LEU MET ASP LYS LEU LEU ARG LYS GLU ASN LEU ASP LEU SEQRES 32 B 625 LYS LEU THR PRO TYR LYS VAL LEU ALA THR SER THR LYS SEQRES 33 B 625 HIS GLY PHE MET GLN PHE ILE GLN SER VAL PRO VAL ALA SEQRES 34 B 625 GLU VAL LEU ASP THR GLU GLY SER ILE GLN ASN PHE PHE SEQRES 35 B 625 ARG LYS TYR ALA PRO SER GLU ASN GLY PRO ASN GLY ILE SEQRES 36 B 625 SER ALA GLU VAL MET ASP THR TYR VAL LYS SER CYS ALA SEQRES 37 B 625 GLY TYR CYS VAL ILE THR TYR ILE LEU GLY VAL GLY ASP SEQRES 38 B 625 ARG HIS LEU ASP ASN LEU LEU LEU THR LYS THR GLY LYS SEQRES 39 B 625 LEU PHE HIS ILE ASP PHE GLY TYR ILE LEU GLY ARG ASP SEQRES 40 B 625 PRO LYS PRO LEU PRO PRO PRO MET LYS LEU ASN LYS GLU SEQRES 41 B 625 MET VAL GLU GLY MET GLY GLY THR GLN SER GLU GLN TYR SEQRES 42 B 625 GLN GLU PHE ARG LYS GLN CYS TYR THR ALA PHE LEU HIS SEQRES 43 B 625 LEU ARG ARG TYR SER ASN LEU ILE LEU ASN LEU PHE SER SEQRES 44 B 625 LEU MET VAL ASP ALA ASN ILE PRO ASP ILE ALA LEU GLU SEQRES 45 B 625 PRO ASP LYS THR VAL LYS LYS VAL GLN ASP LYS PHE ARG SEQRES 46 B 625 LEU ASP LEU SER ASP GLU GLU ALA VAL HIS TYR MET GLN SEQRES 47 B 625 SER LEU ILE ASP GLU SER VAL HIS ALA LEU PHE ALA ALA SEQRES 48 B 625 VAL VAL GLU GLN ILE HIS LYS PHE ALA GLN TYR TRP ARG SEQRES 49 B 625 LYS HET GOL B 901 6 HET 2UG B 902 24 HETNAM GOL GLYCEROL HETNAM 2UG 4'-(CYCLOPROPYLMETHYL)-N~2~-(PYRIDIN-4-YL)-4,5'- HETNAM 2 2UG BIPYRIMIDINE-2,2'-DIAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 2UG C17 H17 N7 FORMUL 4 HOH *91(H2 O) HELIX 1 AA1 GLY B 291 TYR B 302 1 12 HELIX 2 AA2 THR B 309 PHE B 319 1 11 HELIX 3 AA3 TYR B 321 LYS B 328 5 8 HELIX 4 AA4 ALA B 329 LYS B 335 1 7 HELIX 5 AA5 LEU B 341 TRP B 355 1 15 HELIX 6 AA6 ASP B 359 LEU B 364 1 6 HELIX 7 AA7 GLU B 365 SER B 368 5 4 HELIX 8 AA8 ASN B 373 ARG B 385 1 13 HELIX 9 AA9 ASP B 388 ALA B 402 1 15 HELIX 10 AB1 LEU B 403 GLU B 406 5 4 HELIX 11 AB2 ASN B 407 GLY B 414 1 8 HELIX 12 AB3 ASP B 474 LYS B 485 1 12 HELIX 13 AB4 ASN B 486 ASP B 503 1 18 HELIX 14 AB5 ASP B 503 ASP B 510 1 8 HELIX 15 AB6 ASP B 510 GLY B 531 1 22 HELIX 16 AB7 ASP B 532 GLN B 560 1 29 HELIX 17 AB8 ASN B 565 ASP B 579 1 15 HELIX 18 AB9 LEU B 641 GLU B 661 1 21 HELIX 19 AC1 VAL B 690 GLY B 698 1 9 HELIX 20 AC2 SER B 699 ALA B 708 1 10 HELIX 21 AC3 GLY B 713 ILE B 717 5 5 HELIX 22 AC4 SER B 718 GLY B 740 1 23 HELIX 23 AC5 ASN B 780 MET B 787 1 8 HELIX 24 AC6 SER B 792 ARG B 811 1 20 HELIX 25 AC7 TYR B 812 LEU B 822 1 11 HELIX 26 AC8 ILE B 828 LEU B 833 1 6 HELIX 27 AC9 GLU B 834 ASP B 836 5 3 HELIX 28 AD1 LYS B 837 ARG B 847 1 11 HELIX 29 AD2 SER B 851 LEU B 870 1 20 SHEET 1 AA1 4 ILE B 591 LEU B 593 0 SHEET 2 AA1 4 GLU B 596 ILE B 604 -1 O VAL B 599 N LEU B 593 SHEET 3 AA1 4 ALA B 619 THR B 625 -1 O LYS B 624 N GLY B 603 SHEET 4 AA1 4 THR B 610 LEU B 611 -1 N THR B 610 O GLN B 620 SHEET 1 AA2 6 ILE B 591 LEU B 593 0 SHEET 2 AA2 6 GLU B 596 ILE B 604 -1 O VAL B 599 N LEU B 593 SHEET 3 AA2 6 ALA B 619 THR B 625 -1 O LYS B 624 N GLY B 603 SHEET 4 AA2 6 LYS B 630 HIS B 637 -1 O PHE B 635 N ALA B 619 SHEET 5 AA2 6 HIS B 679 GLN B 683 -1 O MET B 682 N ILE B 634 SHEET 6 AA2 6 VAL B 672 ALA B 674 -1 N LEU B 673 O PHE B 681 SHEET 1 AA3 3 VAL B 688 PRO B 689 0 SHEET 2 AA3 3 LEU B 749 LEU B 751 -1 O LEU B 751 N VAL B 688 SHEET 3 AA3 3 LEU B 757 HIS B 759 -1 O PHE B 758 N LEU B 750 SITE 1 AC1 4 GLN B 686 VAL B 688 THR B 752 LYS B 753 SITE 1 AC2 14 ILE B 634 LYS B 636 TYR B 670 MET B 682 SITE 2 AC2 14 GLN B 683 PHE B 684 ILE B 685 SER B 687 SITE 3 AC2 14 LEU B 750 ILE B 760 ASP B 761 HOH B1015 SITE 4 AC2 14 HOH B1024 HOH B1050 CRYST1 114.532 114.532 146.257 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008731 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006837 0.00000