data_4PHY # _entry.id 4PHY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4PHY pdb_00004phy 10.2210/pdb4phy/pdb WWPDB D_1000201370 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-02-18 2 'Structure model' 1 1 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other 5 2 'Structure model' 'Refinement description' 6 2 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' database_2 5 2 'Structure model' pdbx_database_status 6 2 'Structure model' pdbx_entity_src_syn 7 2 'Structure model' pdbx_struct_assembly 8 2 'Structure model' pdbx_struct_oper_list 9 2 'Structure model' refine_hist # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_CSD' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_pdbx_database_status.pdb_format_compatible' 5 2 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 6 2 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 7 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 4PHY _pdbx_database_status.recvd_initial_deposition_date 2014-05-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.methods_development_category . _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boerneke, M.A.' 1 'Dibrov, S.M.' 2 'Hermann, T.H.' 3 # _citation.abstract . _citation.abstract_id_CAS . _citation.book_id_ISBN . _citation.book_publisher ? _citation.book_publisher_city . _citation.book_title . _citation.coordinate_linkage . _citation.country US _citation.database_id_Medline . _citation.details . _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full . _citation.journal_issue . _citation.journal_volume 111 _citation.language . _citation.page_first 15952 _citation.page_last 15957 _citation.title 'Functional conservation despite structural divergence in ligand-responsive RNA switches.' _citation.year 2014 _citation.database_id_CSD . _citation.pdbx_database_id_DOI 10.1073/pnas.1414678111 _citation.pdbx_database_id_PubMed 25349403 _citation.unpublished_flag . # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boerneke, M.A.' 1 ? primary 'Dibrov, S.M.' 2 ? primary 'Gu, J.' 3 ? primary 'Wyles, D.L.' 4 ? primary 'Hermann, T.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (26-MER)' 8206.906 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(*GP*CP*AP*GP*GP*AP*AP*CP*CP*GP*AP*GP*AP*GP*GP*CP*AP*CP*GP*C)-3') ; 6523.015 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CGUGCUCCCCACCUCGGAUCACUGCG CGUGCUCCCCACCUCGGAUCACUGCG A ? 2 polyribonucleotide no no GCAGGAACCGAGAGGCACGC GCAGGAACCGAGAGGCACGC B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'ACETATE ION' ACT # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 C n 1 8 C n 1 9 C n 1 10 C n 1 11 A n 1 12 C n 1 13 C n 1 14 U n 1 15 C n 1 16 G n 1 17 G n 1 18 A n 1 19 U n 1 20 C n 1 21 A n 1 22 C n 1 23 U n 1 24 G n 1 25 C n 1 26 G n 2 1 G n 2 2 C n 2 3 A n 2 4 G n 2 5 G n 2 6 A n 2 7 A n 2 8 C n 2 9 C n 2 10 G n 2 11 A n 2 12 G n 2 13 A n 2 14 G n 2 15 G n 2 16 C n 2 17 A n 2 18 C n 2 19 G n 2 20 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 26 'Seneca valley virus' ? 390157 ? 2 1 sample 1 20 'Seneca valley virus' ? 390157 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 C 8 8 8 C C A . n A 1 9 C 9 9 9 C C A . n A 1 10 C 10 10 10 C C A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 U 19 19 19 U U A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 C 22 22 22 C C A . n A 1 23 U 23 23 23 U U A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 G 26 26 26 G G A . n B 2 1 G 1 27 27 G G B . n B 2 2 C 2 28 28 C C B . n B 2 3 A 3 29 29 A A B . n B 2 4 G 4 30 30 G G B . n B 2 5 G 5 31 31 G G B . n B 2 6 A 6 32 32 A A B . n B 2 7 A 7 33 33 A A B . n B 2 8 C 8 34 34 C C B . n B 2 9 C 9 35 35 C C B . n B 2 10 G 10 36 36 G G B . n B 2 11 A 11 37 37 A A B . n B 2 12 G 12 38 38 G G B . n B 2 13 A 13 39 39 A A B . n B 2 14 G 14 40 40 G G B . n B 2 15 G 15 41 41 G G B . n B 2 16 C 16 42 42 C C B . n B 2 17 A 17 43 43 A A B . n B 2 18 C 18 44 44 C C B . n B 2 19 G 19 45 45 G G B . n B 2 20 C 20 46 46 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 101 1 MG MG A . D 3 MG 1 101 1 MG MG B . E 4 ACT 1 102 1 ACT ACT B . F 4 ACT 1 103 1 ACT ACT B . # _software.citation_id ? _software.classification refinement _software.compiler_name . _software.compiler_version . _software.contact_author . _software.contact_author_email . _software.date . _software.description . _software.dependencies . _software.hardware . _software.language . _software.location . _software.mods . _software.name PHENIX _software.os . _software.os_version . _software.type . _software.version '(phenix.refine: 1.7.3_928)' _software.pdbx_ordinal 1 # _cell.entry_id 4PHY _cell.length_a 79.611 _cell.length_b 79.611 _cell.length_c 100.940 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PHY _symmetry.cell_setting . _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M . # _exptl.absorpt_coefficient_mu . _exptl.absorpt_correction_T_max . _exptl.absorpt_correction_T_min . _exptl.absorpt_correction_type . _exptl.absorpt_process_details . _exptl.entry_id 4PHY _exptl.crystals_number . _exptl.details . _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details . # _exptl_crystal.colour . _exptl_crystal.density_diffrn . _exptl_crystal.density_Matthews 3.13 _exptl_crystal.density_method . _exptl_crystal.density_percent_sol 60.76 _exptl_crystal.description . _exptl_crystal.F_000 . _exptl_crystal.id 1 _exptl_crystal.preparation . _exptl_crystal.size_max . _exptl_crystal.size_mid . _exptl_crystal.size_min . _exptl_crystal.size_rad . _exptl_crystal.colour_lustre . _exptl_crystal.colour_modifier . _exptl_crystal.colour_primary . _exptl_crystal.density_meas . _exptl_crystal.density_meas_esd . _exptl_crystal.density_meas_gt . _exptl_crystal.density_meas_lt . _exptl_crystal.density_meas_temp . _exptl_crystal.density_meas_temp_esd . _exptl_crystal.density_meas_temp_gt . _exptl_crystal.density_meas_temp_lt . _exptl_crystal.pdbx_crystal_image_url . _exptl_crystal.pdbx_crystal_image_format . _exptl_crystal.pdbx_mosaicity . _exptl_crystal.pdbx_mosaicity_esd . # _exptl_crystal_grow.apparatus . _exptl_crystal_grow.atmosphere . _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details . _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref . _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure . _exptl_crystal_grow.pressure_esd . _exptl_crystal_grow.seeding . _exptl_crystal_grow.seeding_ref . _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details . _exptl_crystal_grow.temp_esd . _exptl_crystal_grow.time . _exptl_crystal_grow.pdbx_details 'KCl, Magnesium Acetate, PEG 8K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.ambient_environment . _diffrn.ambient_temp 173 _diffrn.ambient_temp_details . _diffrn.ambient_temp_esd . _diffrn.crystal_id 1 _diffrn.crystal_support . _diffrn.crystal_treatment . _diffrn.details . _diffrn.id 1 _diffrn.ambient_pressure . _diffrn.ambient_pressure_esd . _diffrn.ambient_pressure_gt . _diffrn.ambient_pressure_lt . _diffrn.ambient_temp_gt . _diffrn.ambient_temp_lt . # _diffrn_detector.details . _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.area_resol_mean . _diffrn_detector.dtime . _diffrn_detector.pdbx_frames_total . _diffrn_detector.pdbx_collection_time_total . _diffrn_detector.pdbx_collection_date 2013-09-06 # _diffrn_radiation.collimation . _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge . _diffrn_radiation.inhomogeneity . _diffrn_radiation.monochromator . _diffrn_radiation.polarisn_norm . _diffrn_radiation.polarisn_ratio . _diffrn_radiation.probe . _diffrn_radiation.type . _diffrn_radiation.xray_symbol . _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list . _diffrn_radiation.pdbx_wavelength . _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer . _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current . _diffrn_source.details . _diffrn_source.diffrn_id 1 _diffrn_source.power . _diffrn_source.size . _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target . _diffrn_source.type RIGAKU _diffrn_source.voltage . _diffrn_source.take-off_angle . _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength . _diffrn_source.pdbx_synchrotron_beamline . _diffrn_source.pdbx_synchrotron_site . # _reflns.B_iso_Wilson_estimate . _reflns.entry_id 4PHY _reflns.data_reduction_details . _reflns.data_reduction_method . _reflns.d_resolution_high 3.10 _reflns.d_resolution_low 19.90 _reflns.details . _reflns.limit_h_max . _reflns.limit_h_min . _reflns.limit_k_max . _reflns.limit_k_min . _reflns.limit_l_max . _reflns.limit_l_min . _reflns.number_all 3319 _reflns.number_obs 3167 _reflns.observed_criterion . _reflns.observed_criterion_F_max . _reflns.observed_criterion_F_min . _reflns.observed_criterion_I_max . _reflns.observed_criterion_I_min . _reflns.observed_criterion_sigma_F . _reflns.observed_criterion_sigma_I . _reflns.percent_possible_obs 88.15 _reflns.R_free_details . _reflns.Rmerge_F_all . _reflns.Rmerge_F_obs . _reflns.Friedel_coverage . _reflns.number_gt . _reflns.threshold_expression . _reflns.pdbx_redundancy 28.0 _reflns.pdbx_Rmerge_I_obs . _reflns.pdbx_Rmerge_I_all . _reflns.pdbx_Rsym_value . _reflns.pdbx_netI_over_av_sigmaI . _reflns.pdbx_netI_over_sigmaI 22.28 _reflns.pdbx_res_netI_over_av_sigmaI_2 . _reflns.pdbx_res_netI_over_sigmaI_2 . _reflns.pdbx_chi_squared . _reflns.pdbx_scaling_rejects . _reflns.pdbx_d_res_high_opt . _reflns.pdbx_d_res_low_opt . _reflns.pdbx_d_res_opt_method . _reflns.phase_calculation_details . _reflns.pdbx_Rrim_I_all . _reflns.pdbx_Rpim_I_all . _reflns.pdbx_d_opt . _reflns.pdbx_number_measured_all . _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.10 _reflns_shell.d_res_low 3.21 _reflns_shell.meanI_over_sigI_all . _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.number_measured_all . _reflns_shell.number_measured_obs . _reflns_shell.number_possible . _reflns_shell.number_unique_all . _reflns_shell.number_unique_obs . _reflns_shell.percent_possible_all 56.4 _reflns_shell.percent_possible_obs . _reflns_shell.Rmerge_F_all . _reflns_shell.Rmerge_F_obs . _reflns_shell.Rmerge_I_all . _reflns_shell.Rmerge_I_obs . _reflns_shell.meanI_over_sigI_gt . _reflns_shell.meanI_over_uI_all . _reflns_shell.meanI_over_uI_gt . _reflns_shell.number_measured_gt . _reflns_shell.number_unique_gt . _reflns_shell.percent_possible_gt . _reflns_shell.Rmerge_F_gt . _reflns_shell.Rmerge_I_gt . _reflns_shell.pdbx_redundancy 15.5 _reflns_shell.pdbx_Rsym_value . _reflns_shell.pdbx_chi_squared . _reflns_shell.pdbx_netI_over_sigmaI_all . _reflns_shell.pdbx_netI_over_sigmaI_obs . _reflns_shell.pdbx_Rrim_I_all . _reflns_shell.pdbx_Rpim_I_all . _reflns_shell.pdbx_rejects . _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.aniso_B[1][1] -14.0187 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -14.0187 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] 31.5952 _refine.B_iso_max . _refine.B_iso_mean . _refine.B_iso_min . _refine.correlation_coeff_Fo_to_Fc . _refine.correlation_coeff_Fo_to_Fc_free . _refine.details . _refine.diff_density_max . _refine.diff_density_max_esd . _refine.diff_density_min . _refine.diff_density_min_esd . _refine.diff_density_rms . _refine.diff_density_rms_esd . _refine.entry_id 4PHY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details . _refine.ls_abs_structure_Flack . _refine.ls_abs_structure_Flack_esd . _refine.ls_abs_structure_Rogers . _refine.ls_abs_structure_Rogers_esd . _refine.ls_d_res_high 3.10 _refine.ls_d_res_low 19.375 _refine.ls_extinction_coef . _refine.ls_extinction_coef_esd . _refine.ls_extinction_expression . _refine.ls_extinction_method . _refine.ls_goodness_of_fit_all . _refine.ls_goodness_of_fit_all_esd . _refine.ls_goodness_of_fit_obs . _refine.ls_goodness_of_fit_obs_esd . _refine.ls_hydrogen_treatment . _refine.ls_matrix_type . _refine.ls_number_constraints . _refine.ls_number_parameters . _refine.ls_number_reflns_all . _refine.ls_number_reflns_obs 3167 _refine.ls_number_reflns_R_free 152 _refine.ls_number_reflns_R_work . _refine.ls_number_restraints . _refine.ls_percent_reflns_obs 88.15 _refine.ls_percent_reflns_R_free 4.58 _refine.ls_R_factor_all . _refine.ls_R_factor_obs 0.2173 _refine.ls_R_factor_R_free 0.2679 _refine.ls_R_factor_R_free_error . _refine.ls_R_factor_R_free_error_details . _refine.ls_R_factor_R_work 0.2148 _refine.ls_R_Fsqd_factor_obs . _refine.ls_R_I_factor_obs . _refine.ls_redundancy_reflns_all . _refine.ls_redundancy_reflns_obs . _refine.ls_restrained_S_all . _refine.ls_restrained_S_obs . _refine.ls_shift_over_esd_max . _refine.ls_shift_over_esd_mean . _refine.ls_structure_factor_coef . _refine.ls_weighting_details . _refine.ls_weighting_scheme . _refine.ls_wR_factor_all . _refine.ls_wR_factor_obs . _refine.ls_wR_factor_R_free . _refine.ls_wR_factor_R_work . _refine.occupancy_max . _refine.occupancy_min . _refine.overall_SU_B . _refine.overall_SU_ML 0.34 _refine.overall_SU_R_Cruickshank_DPI . _refine.overall_SU_R_free . _refine.overall_FOM_free_R_set . _refine.overall_FOM_work_R_set . _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol 85.991 _refine.solvent_model_param_ksol 0.243 _refine.ls_R_factor_gt . _refine.ls_goodness_of_fit_gt . _refine.ls_goodness_of_fit_ref . _refine.ls_shift_over_su_max . _refine.ls_shift_over_su_max_lt . _refine.ls_shift_over_su_mean . _refine.ls_shift_over_su_mean_lt . _refine.pdbx_ls_sigma_I . _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd . _refine.pdbx_data_cutoff_high_absF . _refine.pdbx_data_cutoff_high_rms_absF . _refine.pdbx_data_cutoff_low_absF . _refine.pdbx_isotropic_thermal_model . _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model . _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case . _refine.pdbx_overall_ESU_R . _refine.pdbx_overall_ESU_R_Free . _refine.pdbx_solvent_vdw_probe_radii 1.30 _refine.pdbx_solvent_ion_probe_radii . _refine.pdbx_solvent_shrinkage_radii 1.11 _refine.pdbx_real_space_R . _refine.pdbx_density_correlation . _refine.pdbx_pd_number_of_powder_patterns . _refine.pdbx_pd_number_of_points . _refine.pdbx_pd_meas_number_of_points . _refine.pdbx_pd_proc_ls_prof_R_factor . _refine.pdbx_pd_proc_ls_prof_wR_factor . _refine.pdbx_pd_Marquardt_correlation_coeff . _refine.pdbx_pd_Fsqrd_R_factor . _refine.pdbx_pd_ls_matrix_band_width . _refine.pdbx_overall_phase_error 31.19 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI . _refine.pdbx_overall_SU_R_free_Blow_DPI . _refine.pdbx_overall_SU_R_Blow_DPI . _refine.pdbx_TLS_residual_ADP_flag . _refine.pdbx_diffrn_id 1 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 974 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 984 _refine_hist.d_res_high 3.10 _refine_hist.d_res_low 19.375 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' . 0.007 . 1093 . f_bond_d . . 'X-RAY DIFFRACTION' . 1.070 . 1697 . f_angle_d . . 'X-RAY DIFFRACTION' . 17.489 . 544 . f_dihedral_angle_d . . 'X-RAY DIFFRACTION' . 0.057 . 228 . f_chiral_restr . . 'X-RAY DIFFRACTION' . 0.005 . 48 . f_plane_restr . . # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 3.10 _refine_ls_shell.d_res_low 19.3749 _refine_ls_shell.number_reflns_all . _refine_ls_shell.number_reflns_obs . _refine_ls_shell.number_reflns_R_free 152 _refine_ls_shell.number_reflns_R_work 3167 _refine_ls_shell.percent_reflns_obs 88.00 _refine_ls_shell.percent_reflns_R_free . _refine_ls_shell.R_factor_all . _refine_ls_shell.R_factor_obs . _refine_ls_shell.R_factor_R_free 0.2679 _refine_ls_shell.R_factor_R_free_error . _refine_ls_shell.R_factor_R_work 0.2148 _refine_ls_shell.redundancy_reflns_all . _refine_ls_shell.redundancy_reflns_obs . _refine_ls_shell.wR_factor_all . _refine_ls_shell.wR_factor_obs . _refine_ls_shell.wR_factor_R_free . _refine_ls_shell.wR_factor_R_work . _refine_ls_shell.pdbx_total_number_of_bins_used . _refine_ls_shell.pdbx_phase_error . # _struct.entry_id 4PHY _struct.title 'Functional conservation despite structural divergence in ligand-responsive RNA switches' _struct.pdbx_model_details . _struct.pdbx_formula_weight . _struct.pdbx_formula_weight_method . _struct.pdbx_model_type_details . _struct.pdbx_CASP_flag . # _struct_keywords.entry_id 4PHY _struct_keywords.text 'Viral genome, internal ribosome entry site, translation, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 4PHY 4PHY 1 ? 1 ? 2 PDB 4PHY 4PHY 2 ? 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4PHY A 1 ? 26 ? 4PHY 1 ? 26 ? 1 26 2 2 4PHY B 1 ? 20 ? 4PHY 27 ? 46 ? 27 46 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2490 ? 1 MORE -13 ? 1 'SSA (A^2)' 8910 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 1 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 1 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 1 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 18 N3 ? ? A G 2 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 18 O2 ? ? A G 2 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 18 N4 ? ? A G 2 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 17 N1 ? ? A U 3 B A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 17 N6 ? ? A U 3 B A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 16 N3 ? ? A G 4 B C 42 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 15 N1 ? ? A C 5 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 15 O6 ? ? A C 5 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 15 N2 ? ? A C 5 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 13 N7 ? ? A U 6 B A 39 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog14 hydrog ? ? A U 6 O2 ? ? ? 1_555 B A 13 N6 ? ? A U 6 B A 39 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog15 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 14 N1 ? ? A C 12 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 14 O6 ? ? A C 12 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 14 N2 ? ? A C 12 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 13 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 13 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 14 N3 ? ? ? 1_555 B A 11 N1 ? ? A U 14 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 14 O4 ? ? ? 1_555 B A 11 N6 ? ? A U 14 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 36 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog24 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 16 B C 35 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog25 hydrog ? ? A G 17 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 17 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 17 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 17 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 17 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 17 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 18 N6 ? ? ? 1_555 B A 7 N1 ? ? A A 18 B A 33 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog29 hydrog ? ? A U 19 O4 ? ? ? 1_555 B A 6 N6 ? ? A U 19 B A 32 12_544 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog30 hydrog ? ? A C 22 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 22 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 22 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 22 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 22 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 22 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 23 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 23 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 23 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 23 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 24 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 24 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 24 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 24 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 24 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 24 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 25 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 25 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 25 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 25 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 25 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 25 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B A 6 N6 ? ? ? 1_555 A U 19 O4 ? ? B A 32 A U 19 12_544 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog42 hydrog ? ? B G 12 N1 ? ? ? 1_555 B G 14 O6 ? ? B G 38 B G 40 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog43 hydrog ? ? B G 12 N2 ? ? ? 1_555 B G 14 N7 ? ? B G 38 B G 40 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 101 ? 1 'binding site for residue MG B 101' AC2 Software B ACT 102 ? 4 'binding site for residue ACT B 102' AC3 Software B ACT 103 ? 1 'binding site for residue ACT B 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 G B 19 ? G B 45 . ? 1_555 ? 2 AC2 4 U A 19 ? U A 19 . ? 1_555 ? 3 AC2 4 C A 20 ? C A 20 . ? 1_555 ? 4 AC2 4 G B 4 ? G B 30 . ? 1_555 ? 5 AC2 4 G B 5 ? G B 31 . ? 1_555 ? 6 AC3 1 G B 10 ? G B 36 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 A C 22 ? ? N1 A C 22 ? ? "C1'" A C 22 ? ? 126.89 118.80 8.09 1.10 N 2 1 N3 B G 31 ? ? C4 B G 31 ? ? C5 B G 31 ? ? 123.41 128.60 -5.19 0.50 N 3 1 C8 B G 31 ? ? N9 B G 31 ? ? C4 B G 31 ? ? 103.35 106.40 -3.05 0.40 N 4 1 N3 B G 31 ? ? C4 B G 31 ? ? N9 B G 31 ? ? 129.92 126.00 3.92 0.60 N 5 1 N1 B G 31 ? ? C6 B G 31 ? ? O6 B G 31 ? ? 115.79 119.90 -4.11 0.60 N 6 1 C8 B G 31 ? ? N9 B G 31 ? ? "C1'" B G 31 ? ? 118.83 127.00 -8.17 1.30 N 7 1 C4 B G 31 ? ? N9 B G 31 ? ? "C1'" B G 31 ? ? 137.81 126.50 11.31 1.30 N 8 1 C8 B A 32 ? ? N9 B A 32 ? ? C4 B A 32 ? ? 102.53 105.80 -3.27 0.40 N 9 1 N9 B A 32 ? ? C4 B A 32 ? ? C5 B A 32 ? ? 108.28 105.80 2.48 0.40 N 10 1 C6 B C 34 ? ? N1 B C 34 ? ? C2 B C 34 ? ? 123.01 120.30 2.71 0.40 N 11 1 C5 B C 34 ? ? C6 B C 34 ? ? N1 B C 34 ? ? 117.73 121.00 -3.27 0.50 N # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details . _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 15.5746 _pdbx_refine_tls.origin_y -25.3019 _pdbx_refine_tls.origin_z -13.2805 _pdbx_refine_tls.T[1][1] 0.6227 _pdbx_refine_tls.T[1][1]_esd . _pdbx_refine_tls.T[1][2] -0.0541 _pdbx_refine_tls.T[1][2]_esd . _pdbx_refine_tls.T[1][3] 0.0644 _pdbx_refine_tls.T[1][3]_esd . _pdbx_refine_tls.T[2][2] 0.5997 _pdbx_refine_tls.T[2][2]_esd . _pdbx_refine_tls.T[2][3] 0.0467 _pdbx_refine_tls.T[2][3]_esd . _pdbx_refine_tls.T[3][3] 0.6559 _pdbx_refine_tls.T[3][3]_esd . _pdbx_refine_tls.L[1][1] 2.1701 _pdbx_refine_tls.L[1][1]_esd . _pdbx_refine_tls.L[1][2] 0.1177 _pdbx_refine_tls.L[1][2]_esd . _pdbx_refine_tls.L[1][3] -1.0871 _pdbx_refine_tls.L[1][3]_esd . _pdbx_refine_tls.L[2][2] 2.6812 _pdbx_refine_tls.L[2][2]_esd . _pdbx_refine_tls.L[2][3] -0.4093 _pdbx_refine_tls.L[2][3]_esd . _pdbx_refine_tls.L[3][3] 1.6609 _pdbx_refine_tls.L[3][3]_esd . _pdbx_refine_tls.S[1][1] 0.1863 _pdbx_refine_tls.S[1][1]_esd . _pdbx_refine_tls.S[1][2] -0.2615 _pdbx_refine_tls.S[1][2]_esd . _pdbx_refine_tls.S[1][3] -0.2015 _pdbx_refine_tls.S[1][3]_esd . _pdbx_refine_tls.S[2][1] 0.8412 _pdbx_refine_tls.S[2][1]_esd . _pdbx_refine_tls.S[2][2] -0.0802 _pdbx_refine_tls.S[2][2]_esd . _pdbx_refine_tls.S[2][3] 1.1959 _pdbx_refine_tls.S[2][3]_esd . _pdbx_refine_tls.S[3][1] -0.2822 _pdbx_refine_tls.S[3][1]_esd . _pdbx_refine_tls.S[3][2] 0.2079 _pdbx_refine_tls.S[3][2]_esd . _pdbx_refine_tls.S[3][3] 0.0950 _pdbx_refine_tls.S[3][3]_esd . # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.beg_auth_asym_id . _pdbx_refine_tls_group.beg_auth_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.end_auth_asym_id . _pdbx_refine_tls_group.end_auth_seq_id . _pdbx_refine_tls_group.selection . _pdbx_refine_tls_group.selection_details all # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ACT C C N N 38 ACT O O N N 39 ACT OXT O N N 40 ACT CH3 C N N 41 ACT H1 H N N 42 ACT H2 H N N 43 ACT H3 H N N 44 C OP3 O N N 45 C P P N N 46 C OP1 O N N 47 C OP2 O N N 48 C "O5'" O N N 49 C "C5'" C N N 50 C "C4'" C N R 51 C "O4'" O N N 52 C "C3'" C N S 53 C "O3'" O N N 54 C "C2'" C N R 55 C "O2'" O N N 56 C "C1'" C N R 57 C N1 N N N 58 C C2 C N N 59 C O2 O N N 60 C N3 N N N 61 C C4 C N N 62 C N4 N N N 63 C C5 C N N 64 C C6 C N N 65 C HOP3 H N N 66 C HOP2 H N N 67 C "H5'" H N N 68 C "H5''" H N N 69 C "H4'" H N N 70 C "H3'" H N N 71 C "HO3'" H N N 72 C "H2'" H N N 73 C "HO2'" H N N 74 C "H1'" H N N 75 C H41 H N N 76 C H42 H N N 77 C H5 H N N 78 C H6 H N N 79 G OP3 O N N 80 G P P N N 81 G OP1 O N N 82 G OP2 O N N 83 G "O5'" O N N 84 G "C5'" C N N 85 G "C4'" C N R 86 G "O4'" O N N 87 G "C3'" C N S 88 G "O3'" O N N 89 G "C2'" C N R 90 G "O2'" O N N 91 G "C1'" C N R 92 G N9 N Y N 93 G C8 C Y N 94 G N7 N Y N 95 G C5 C Y N 96 G C6 C N N 97 G O6 O N N 98 G N1 N N N 99 G C2 C N N 100 G N2 N N N 101 G N3 N N N 102 G C4 C Y N 103 G HOP3 H N N 104 G HOP2 H N N 105 G "H5'" H N N 106 G "H5''" H N N 107 G "H4'" H N N 108 G "H3'" H N N 109 G "HO3'" H N N 110 G "H2'" H N N 111 G "HO2'" H N N 112 G "H1'" H N N 113 G H8 H N N 114 G H1 H N N 115 G H21 H N N 116 G H22 H N N 117 MG MG MG N N 118 U OP3 O N N 119 U P P N N 120 U OP1 O N N 121 U OP2 O N N 122 U "O5'" O N N 123 U "C5'" C N N 124 U "C4'" C N R 125 U "O4'" O N N 126 U "C3'" C N S 127 U "O3'" O N N 128 U "C2'" C N R 129 U "O2'" O N N 130 U "C1'" C N R 131 U N1 N N N 132 U C2 C N N 133 U O2 O N N 134 U N3 N N N 135 U C4 C N N 136 U O4 O N N 137 U C5 C N N 138 U C6 C N N 139 U HOP3 H N N 140 U HOP2 H N N 141 U "H5'" H N N 142 U "H5''" H N N 143 U "H4'" H N N 144 U "H3'" H N N 145 U "HO3'" H N N 146 U "H2'" H N N 147 U "HO2'" H N N 148 U "H1'" H N N 149 U H3 H N N 150 U H5 H N N 151 U H6 H N N 152 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ACT C O doub N N 40 ACT C OXT sing N N 41 ACT C CH3 sing N N 42 ACT CH3 H1 sing N N 43 ACT CH3 H2 sing N N 44 ACT CH3 H3 sing N N 45 C OP3 P sing N N 46 C OP3 HOP3 sing N N 47 C P OP1 doub N N 48 C P OP2 sing N N 49 C P "O5'" sing N N 50 C OP2 HOP2 sing N N 51 C "O5'" "C5'" sing N N 52 C "C5'" "C4'" sing N N 53 C "C5'" "H5'" sing N N 54 C "C5'" "H5''" sing N N 55 C "C4'" "O4'" sing N N 56 C "C4'" "C3'" sing N N 57 C "C4'" "H4'" sing N N 58 C "O4'" "C1'" sing N N 59 C "C3'" "O3'" sing N N 60 C "C3'" "C2'" sing N N 61 C "C3'" "H3'" sing N N 62 C "O3'" "HO3'" sing N N 63 C "C2'" "O2'" sing N N 64 C "C2'" "C1'" sing N N 65 C "C2'" "H2'" sing N N 66 C "O2'" "HO2'" sing N N 67 C "C1'" N1 sing N N 68 C "C1'" "H1'" sing N N 69 C N1 C2 sing N N 70 C N1 C6 sing N N 71 C C2 O2 doub N N 72 C C2 N3 sing N N 73 C N3 C4 doub N N 74 C C4 N4 sing N N 75 C C4 C5 sing N N 76 C N4 H41 sing N N 77 C N4 H42 sing N N 78 C C5 C6 doub N N 79 C C5 H5 sing N N 80 C C6 H6 sing N N 81 G OP3 P sing N N 82 G OP3 HOP3 sing N N 83 G P OP1 doub N N 84 G P OP2 sing N N 85 G P "O5'" sing N N 86 G OP2 HOP2 sing N N 87 G "O5'" "C5'" sing N N 88 G "C5'" "C4'" sing N N 89 G "C5'" "H5'" sing N N 90 G "C5'" "H5''" sing N N 91 G "C4'" "O4'" sing N N 92 G "C4'" "C3'" sing N N 93 G "C4'" "H4'" sing N N 94 G "O4'" "C1'" sing N N 95 G "C3'" "O3'" sing N N 96 G "C3'" "C2'" sing N N 97 G "C3'" "H3'" sing N N 98 G "O3'" "HO3'" sing N N 99 G "C2'" "O2'" sing N N 100 G "C2'" "C1'" sing N N 101 G "C2'" "H2'" sing N N 102 G "O2'" "HO2'" sing N N 103 G "C1'" N9 sing N N 104 G "C1'" "H1'" sing N N 105 G N9 C8 sing Y N 106 G N9 C4 sing Y N 107 G C8 N7 doub Y N 108 G C8 H8 sing N N 109 G N7 C5 sing Y N 110 G C5 C6 sing N N 111 G C5 C4 doub Y N 112 G C6 O6 doub N N 113 G C6 N1 sing N N 114 G N1 C2 sing N N 115 G N1 H1 sing N N 116 G C2 N2 sing N N 117 G C2 N3 doub N N 118 G N2 H21 sing N N 119 G N2 H22 sing N N 120 G N3 C4 sing N N 121 U OP3 P sing N N 122 U OP3 HOP3 sing N N 123 U P OP1 doub N N 124 U P OP2 sing N N 125 U P "O5'" sing N N 126 U OP2 HOP2 sing N N 127 U "O5'" "C5'" sing N N 128 U "C5'" "C4'" sing N N 129 U "C5'" "H5'" sing N N 130 U "C5'" "H5''" sing N N 131 U "C4'" "O4'" sing N N 132 U "C4'" "C3'" sing N N 133 U "C4'" "H4'" sing N N 134 U "O4'" "C1'" sing N N 135 U "C3'" "O3'" sing N N 136 U "C3'" "C2'" sing N N 137 U "C3'" "H3'" sing N N 138 U "O3'" "HO3'" sing N N 139 U "C2'" "O2'" sing N N 140 U "C2'" "C1'" sing N N 141 U "C2'" "H2'" sing N N 142 U "O2'" "HO2'" sing N N 143 U "C1'" N1 sing N N 144 U "C1'" "H1'" sing N N 145 U N1 C2 sing N N 146 U N1 C6 sing N N 147 U C2 O2 doub N N 148 U C2 N3 sing N N 149 U N3 C4 sing N N 150 U N3 H3 sing N N 151 U C4 O4 doub N N 152 U C4 C5 sing N N 153 U C5 C6 doub N N 154 U C5 H5 sing N N 155 U C6 H6 sing N N 156 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4PHY 'double helix' 4PHY 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 19 1_555 -1.158 0.255 -0.370 13.742 -8.954 4.697 1 A_C1:G45_B A 1 ? B 45 ? 19 1 1 A G 2 1_555 B C 18 1_555 -0.248 0.121 -0.623 -5.691 -13.426 -0.606 2 A_G2:C44_B A 2 ? B 44 ? 19 1 1 A U 3 1_555 B A 17 1_555 -0.122 0.002 0.554 -10.564 17.323 -12.775 3 A_U3:A43_B A 3 ? B 43 ? 20 1 1 A G 4 1_555 B C 16 1_555 1.666 0.022 -0.503 2.719 -7.765 -13.008 4 A_G4:C42_B A 4 ? B 42 ? ? 1 1 A C 5 1_555 B G 15 1_555 -0.237 0.069 -1.018 10.242 -13.698 -4.958 5 A_C5:G41_B A 5 ? B 41 ? 19 1 1 A U 6 1_555 B A 13 1_555 4.392 -2.396 1.312 -14.441 26.135 -86.118 6 A_U6:A39_B A 6 ? B 39 ? 24 4 1 A C 12 1_555 B G 14 1_555 0.627 -0.680 -0.797 17.382 -1.583 -3.839 7 A_C12:G40_B A 12 ? B 40 ? 19 1 1 A C 13 1_555 B G 12 1_555 -0.248 -0.079 0.020 8.635 -20.227 -2.336 8 A_C13:G38_B A 13 ? B 38 ? 19 1 1 A U 14 1_555 B A 11 1_555 0.396 0.264 0.257 14.390 9.066 -0.614 9 A_U14:A37_B A 14 ? B 37 ? 20 1 1 A C 15 1_555 B G 10 1_555 -0.668 0.438 -0.162 -0.635 0.452 7.119 10 A_C15:G36_B A 15 ? B 36 ? ? 1 1 A G 16 1_555 B C 9 1_555 -0.225 0.358 -0.069 1.638 3.055 5.150 11 A_G16:C35_B A 16 ? B 35 ? ? 1 1 A G 17 1_555 B C 8 1_555 0.571 -0.137 -0.883 -15.894 -5.517 -8.955 12 A_G17:C34_B A 17 ? B 34 ? 19 1 1 A A 18 1_555 B A 7 1_555 -2.851 1.909 0.196 -13.576 -5.134 3.985 13 A_A18:A33_B A 18 ? B 33 ? ? ? 1 A C 22 1_555 B G 4 1_555 -1.335 -0.107 -0.226 -6.247 3.763 -7.008 14 A_C22:G30_B A 22 ? B 30 ? 19 1 1 A U 23 1_555 B A 3 1_555 -0.184 -0.036 0.344 -12.885 1.117 7.186 15 A_U23:A29_B A 23 ? B 29 ? 20 1 1 A G 24 1_555 B C 2 1_555 -0.350 -0.575 0.178 -4.150 -9.793 1.593 16 A_G24:C28_B A 24 ? B 28 ? 19 1 1 A C 25 1_555 B G 1 1_555 0.013 -0.722 -0.107 5.650 -14.266 -4.988 17 A_C25:G27_B A 25 ? B 27 ? 19 1 1 A U 19 1_555 B A 6 12_544 0.448 0.629 0.066 -8.948 -21.142 -8.025 18 A_U19:A32_B A 19 ? B 32 ? ? ? 1 A U 19 1_555 B A 6 1_555 0.448 0.629 0.066 -8.948 -21.142 -8.025 19 A_U19:A32_B A 19 ? B 32 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 19 1_555 A G 2 1_555 B C 18 1_555 -0.487 -1.678 3.585 0.356 12.536 35.325 -4.285 0.806 2.843 19.901 -0.565 37.418 1 AA_C1G2:C44G45_BB A 1 ? B 45 ? A 2 ? B 44 ? 1 A G 2 1_555 B C 18 1_555 A U 3 1_555 B A 17 1_555 -0.897 -1.655 3.363 -9.781 10.057 33.229 -4.107 0.062 2.900 16.691 16.233 35.992 2 AA_G2U3:A43C44_BB A 2 ? B 44 ? A 3 ? B 43 ? 1 A U 3 1_555 B A 17 1_555 A G 4 1_555 B C 16 1_555 -0.426 -1.346 2.874 7.227 7.464 39.338 -2.629 1.281 2.476 10.860 -10.514 40.634 3 AA_U3G4:C42A43_BB A 3 ? B 43 ? A 4 ? B 42 ? 1 A G 4 1_555 B C 16 1_555 A C 5 1_555 B G 15 1_555 0.136 -1.831 2.908 2.605 0.854 20.897 -5.322 0.592 2.827 2.343 -7.143 21.074 4 AA_G4C5:G41C42_BB A 4 ? B 42 ? A 5 ? B 41 ? 1 A C 5 1_555 B G 15 1_555 A U 6 1_555 B A 13 1_555 -2.600 -1.677 4.368 -5.041 13.377 81.054 -1.720 1.813 4.229 10.221 3.852 82.090 5 AA_C5U6:A39G41_BB A 5 ? B 41 ? A 6 ? B 39 ? 1 A C 12 1_555 B G 14 1_555 A C 13 1_555 B G 12 1_555 1.713 -1.761 2.915 -1.651 16.751 48.333 -2.980 -2.081 2.175 19.774 1.949 51.013 6 AA_C12C13:G38G40_BB A 12 ? B 40 ? A 13 ? B 38 ? 1 A C 13 1_555 B G 12 1_555 A U 14 1_555 B A 11 1_555 0.154 -1.794 3.347 -10.806 -1.327 34.727 -2.686 -1.797 3.222 -2.158 17.577 36.343 7 AA_C13U14:A37G38_BB A 13 ? B 38 ? A 14 ? B 37 ? 1 A U 14 1_555 B A 11 1_555 A C 15 1_555 B G 10 1_555 0.087 -1.979 3.436 3.571 9.759 27.833 -5.823 0.547 2.599 19.450 -7.118 29.674 8 AA_U14C15:G36A37_BB A 14 ? B 37 ? A 15 ? B 36 ? 1 A C 15 1_555 B G 10 1_555 A G 16 1_555 B C 9 1_555 -0.428 -1.779 3.371 -3.062 -0.351 32.462 -3.105 0.209 3.414 -0.626 5.461 32.604 9 AA_C15G16:C35G36_BB A 15 ? B 36 ? A 16 ? B 35 ? 1 A G 16 1_555 B C 9 1_555 A G 17 1_555 B C 8 1_555 -0.328 -2.306 3.614 7.648 12.431 35.855 -4.997 1.425 2.583 19.239 -11.837 38.622 10 AA_G16G17:C34C35_BB A 16 ? B 35 ? A 17 ? B 34 ? 1 A G 17 1_555 B C 8 1_555 A A 18 1_555 B A 7 1_555 0.770 -2.158 2.969 -2.814 -2.779 18.688 -5.170 -3.672 3.104 -8.437 8.543 19.098 11 AA_G17A18:A33C34_BB A 17 ? B 34 ? A 18 ? B 33 ? 1 A C 22 1_555 B G 4 1_555 A U 23 1_555 B A 3 1_555 0.525 -1.862 3.500 -0.155 2.919 36.942 -3.340 -0.849 3.346 4.598 0.244 37.054 12 AA_C22U23:A29G30_BB A 22 ? B 30 ? A 23 ? B 29 ? 1 A U 23 1_555 B A 3 1_555 A G 24 1_555 B C 2 1_555 0.071 -1.810 2.720 3.158 8.316 26.010 -5.347 0.432 2.048 17.826 -6.769 27.464 13 AA_U23G24:C28A29_BB A 23 ? B 29 ? A 24 ? B 28 ? 1 A G 24 1_555 B C 2 1_555 A C 25 1_555 B G 1 1_555 -0.186 -1.428 2.832 5.025 -1.541 40.139 -1.915 0.760 2.840 -2.233 -7.283 40.467 14 AA_G24C25:G27C28_BB A 24 ? B 28 ? A 25 ? B 27 ? # _atom_sites.entry_id 4PHY _atom_sites.fract_transf_matrix[1][1] 0.012561 _atom_sites.fract_transf_matrix[1][2] 0.007252 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014504 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009907 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_