HEADER HYDROLASE/ANTIBIOTIC 13-MAY-14 4PJZ TITLE CRYSTAL STRUCTURE OF T4 LYSOZYME-GSS-PEPTIDE IN COMPLEX WITH TITLE 2 TEICOPLANIN-A2-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TEICOPLANIN-A2-2; COMPND 3 CHAIN: B; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: LYSOZYME; COMPND 6 CHAIN: A; COMPND 7 EC: 3.2.1.17; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOPLANES TEICHOMYCETICUS; SOURCE 3 ORGANISM_TAXID: 1867; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 6 ORGANISM_TAXID: 10665; SOURCE 7 GENE: E, T4TP126; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PTXB1 KEYWDS SITE-SELECTIVE CATALYST, CARRIER PROTEIN APPROACH, GLYCOPEPTIDE KEYWDS 2 ANTIBIOTIC, HYDROLASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HAN,B.V.LE,H.HAJARE,R.H.G.BAXTER,S.J.MILLER REVDAT 6 27-DEC-23 4PJZ 1 HETSYN LINK REVDAT 5 29-JUL-20 4PJZ 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 25-DEC-19 4PJZ 1 SEQRES REVDAT 3 20-SEP-17 4PJZ 1 COMPND SOURCE JRNL REMARK REVDAT 2 01-OCT-14 4PJZ 1 JRNL REVDAT 1 10-SEP-14 4PJZ 0 JRNL AUTH S.HAN,B.V.LE,H.S.HAJARE,R.H.BAXTER,S.J.MILLER JRNL TITL X-RAY CRYSTAL STRUCTURE OF TEICOPLANIN A2-2 BOUND TO A JRNL TITL 2 CATALYTIC PEPTIDE SEQUENCE VIA THE CARRIER PROTEIN STRATEGY. JRNL REF J.ORG.CHEM. V. 79 8550 2014 JRNL REFN ISSN 0022-3263 JRNL PMID 25147913 JRNL DOI 10.1021/JO501625F REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 20212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1081 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1423 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1397 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.91000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : 2.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1511 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1418 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2048 ; 1.577 ; 2.061 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3232 ; 0.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 226 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1702 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 360 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 700 ; 2.060 ; 2.867 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 699 ; 2.058 ; 2.867 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 872 ; 2.881 ; 4.273 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 873 ; 2.881 ; 4.273 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 811 ; 3.199 ; 3.333 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 811 ; 3.195 ; 3.333 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1176 ; 4.867 ; 4.855 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1493 ; 6.789 ;30.790 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1444 ; 6.713 ;30.553 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PJZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 69.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.85500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIN PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350 ,0.2 M SODIUM POTASSIUM REMARK 280 PHOSPHATE, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.05800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.78450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.44200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.05800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.78450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.44200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.05800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.78450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.44200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.05800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 31.78450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.44200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 342 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 348 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 TEICOPLANIN IS A FAMILY OF TETRACYCLIC GLYCOPEPTIDE ANTIBIOTICS. REMARK 400 THE SCAFFOLD IS A HEPTAPEPTIDE FURTHER GLYCOSYLATED BY THREE MONO REMARK 400 SACCHARIDES: MANNOSE, N-ACETYLGLUCOSAMINE AND BETA-D-GLUCOSAMINE REMARK 400 AND ONLY DIFFER BY THE SIDE CHAIN ATTACHED TO THE LATTER. REMARK 400 TEICOPLANIN A2-2 HAS 8-METHYLNONANOIC ACID ATTACHED TO GLUCOSAMINE. REMARK 400 REMARK 400 THE TEICOPLANIN-A2-2 IS GLYCOPEPTIDE, A MEMBER OF ANTIBIOTIC CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: TEICOPLANIN-A2-2 REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 COMPONENT_2: RESIDUE GCS REMARK 400 COMPONENT_3: RESIDUE MAN REMARK 400 COMPONENT_4: RESIDUE NAG REMARK 400 COMPONENT_5: RESIDUE T55 REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 163 REMARK 465 LEU A 164 REMARK 465 GLY A 165 REMARK 465 SER A 166 REMARK 465 SER A 167 REMARK 465 CCS A 168 REMARK 465 GLY A 169 REMARK 465 MHS A 170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 162 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 12 O HOH A 403 1.89 REMARK 500 O ARG A 8 O HOH A 403 1.94 REMARK 500 OE2 GLU A 11 O HOH A 416 2.06 REMARK 500 OE2 GLU A 45 O HOH A 301 2.14 REMARK 500 O HOH B 216 O HOH A 349 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3FG B 3 -46.81 -132.35 REMARK 500 LYS A 124 29.20 43.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 402 DISTANCE = 5.90 ANGSTROMS DBREF 4PJZ B 1 7 PDB 4PJZ 4PJZ 1 7 DBREF 4PJZ A 1 164 UNP D9IEF7 D9IEF7_BPT4 1 164 SEQADV 4PJZ THR A 54 UNP D9IEF7 CYS 54 ENGINEERED MUTATION SEQADV 4PJZ ALA A 97 UNP D9IEF7 CYS 97 ENGINEERED MUTATION SEQADV 4PJZ GLY A 165 UNP D9IEF7 INSERTION SEQADV 4PJZ SER A 166 UNP D9IEF7 INSERTION SEQADV 4PJZ SER A 167 UNP D9IEF7 INSERTION SEQADV 4PJZ CCS A 168 UNP D9IEF7 INSERTION SEQADV 4PJZ GLY A 169 UNP D9IEF7 INSERTION SEQADV 4PJZ MHS A 170 UNP D9IEF7 INSERTION SEQADV 4PJZ DPR A 171 UNP D9IEF7 INSERTION SEQADV 4PJZ AIB A 172 UNP D9IEF7 INSERTION SEQADV 4PJZ DAL A 173 UNP D9IEF7 INSERTION SEQADV 4PJZ DAL A 174 UNP D9IEF7 INSERTION SEQRES 1 B 7 GHP 3MY 3FG GHP GHP OMY 3FG SEQRES 1 A 174 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 A 174 ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR SEQRES 3 A 174 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU SEQRES 4 A 174 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 A 174 ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 A 174 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 A 174 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 A 174 ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE SEQRES 9 A 174 GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER SEQRES 10 A 174 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 A 174 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO SEQRES 12 A 174 ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 A 174 THR TRP ASP ALA TYR LYS ASN LEU GLY SER SER CCS GLY SEQRES 14 A 174 MHS DPR AIB DAL DAL MODRES 4PJZ NAG B 103 NAG -D MODRES 4PJZ MAN B 104 MAN -D HET GHP B 1 11 HET 3MY B 2 13 HET 3FG B 3 12 HET GHP B 4 11 HET GHP B 5 11 HET OMY B 6 14 HET 3FG B 7 13 HET DPR A 171 7 HET AIB A 172 6 HET DAL A 173 5 HET DAL A 174 6 HET GCS B 101 11 HET T55 B 102 11 HET NAG B 103 14 HET MAN B 104 11 HET PO4 B 105 5 HET GOL B 106 6 HET PO4 A 201 5 HET GOL A 202 6 HETNAM GHP (2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID HETNAM 3MY 3-CHLORO-D-TYROSINE HETNAM 3FG (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID HETNAM OMY (BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE HETNAM DPR D-PROLINE HETNAM AIB ALPHA-AMINOISOBUTYRIC ACID HETNAM DAL D-ALANINE HETNAM GCS 2-AMINO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM T55 8-METHYLNONANOIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GCS BETA-D-GLUCOSAMINE; 2-AMINO-2-DEOXY-BETA-D-GLUCOSE; 2- HETSYN 2 GCS AMINO-2-DEOXY-D-GLUCOSE; 2-AMINO-2-DEOXY-GLUCOSE; D- HETSYN 3 GCS GLUCOSAMINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 GHP 3(C8 H9 N O3) FORMUL 1 3MY C9 H10 CL N O3 FORMUL 1 3FG 2(C8 H9 N O4) FORMUL 1 OMY C9 H10 CL N O4 FORMUL 2 DPR C5 H9 N O2 FORMUL 2 AIB C4 H9 N O2 FORMUL 2 DAL 2(C3 H7 N O2) FORMUL 3 GCS C6 H13 N O5 FORMUL 4 T55 C10 H20 O2 FORMUL 5 NAG C8 H15 N O6 FORMUL 6 MAN C6 H12 O6 FORMUL 7 PO4 2(O4 P 3-) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 11 HOH *132(H2 O) HELIX 1 AA1 ASN A 2 GLY A 12 1 11 HELIX 2 AA2 SER A 38 GLY A 51 1 14 HELIX 3 AA3 THR A 59 ASN A 81 1 23 HELIX 4 AA4 LYS A 83 LEU A 91 1 9 HELIX 5 AA5 ASP A 92 GLY A 113 1 22 HELIX 6 AA6 PHE A 114 GLN A 123 1 10 HELIX 7 AA7 ARG A 125 ALA A 134 1 10 HELIX 8 AA8 SER A 136 THR A 142 1 7 HELIX 9 AA9 THR A 142 GLY A 156 1 15 HELIX 10 AB1 TRP A 158 LYS A 162 5 5 SHEET 1 AA1 4 GHP B 4 GHP B 5 0 SHEET 2 AA1 4 LEU A 13 LYS A 19 -1 O LEU A 13 N GHP B 5 SHEET 3 AA1 4 TYR A 25 GLY A 28 -1 O THR A 26 N TYR A 18 SHEET 4 AA1 4 HIS A 31 THR A 34 -1 O LEU A 33 N TYR A 25 LINK C GHP B 1 N 3MY B 2 1555 1555 1.34 LINK C3 GHP B 1 OD1 3FG B 3 1555 1555 1.37 LINK C 3MY B 2 N 3FG B 3 1555 1555 1.34 LINK OBD 3MY B 2 C3 GHP B 4 1555 1555 1.43 LINK C 3FG B 3 N GHP B 4 1555 1555 1.34 LINK C GHP B 4 N GHP B 5 1555 1555 1.33 LINK C5 GHP B 4 OCZ OMY B 6 1555 1555 1.40 LINK O4 GHP B 4 C1 GCS B 101 1555 1555 1.41 LINK C GHP B 5 N OMY B 6 1555 1555 1.35 LINK C3 GHP B 5 CG1 3FG B 7 1555 1555 1.44 LINK C OMY B 6 N 3FG B 7 1555 1555 1.32 LINK ODE OMY B 6 C1 NAG B 103 1555 1555 1.43 LINK OD1 3FG B 7 C1 MAN B 104 1555 1555 1.43 LINK N2 GCS B 101 C T55 B 102 1555 1555 1.32 LINK C DPR A 171 N AIB A 172 1555 1555 1.33 LINK C AIB A 172 N DAL A 173 1555 1555 1.33 LINK C DAL A 173 N DAL A 174 1555 1555 1.33 CISPEP 1 GHP B 5 OMY B 6 0 11.88 CRYST1 58.116 63.569 138.884 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017207 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007200 0.00000 HETATM 1 N GHP B 1 30.812 19.162 40.865 1.00 29.04 N HETATM 2 CA GHP B 1 29.924 18.868 39.702 1.00 26.99 C HETATM 3 C GHP B 1 29.933 17.341 39.619 1.00 26.57 C HETATM 4 O GHP B 1 30.156 16.666 40.630 1.00 25.24 O HETATM 5 C1 GHP B 1 28.609 19.480 40.020 1.00 23.92 C HETATM 6 C2 GHP B 1 27.603 18.712 40.589 1.00 24.59 C HETATM 7 C3 GHP B 1 26.365 19.262 40.879 1.00 23.23 C HETATM 8 C4 GHP B 1 26.127 20.613 40.636 1.00 23.03 C HETATM 9 O4 GHP B 1 24.913 21.172 40.942 1.00 26.78 O HETATM 10 C5 GHP B 1 27.127 21.386 40.075 1.00 23.65 C HETATM 11 C6 GHP B 1 28.357 20.830 39.776 1.00 24.35 C HETATM 12 OBD 3MY B 2 28.133 16.504 32.152 1.00 24.07 O HETATM 13 CZ 3MY B 2 28.783 16.171 33.318 1.00 25.58 C HETATM 14 CE2 3MY B 2 28.729 14.802 33.815 1.00 24.92 C HETATM 15 CD2 3MY B 2 29.335 14.399 35.000 1.00 23.82 C HETATM 16 CL 3MY B 2 27.804 13.659 32.841 1.00 38.82 CL HETATM 17 CE1 3MY B 2 29.493 17.062 34.097 1.00 24.42 C HETATM 18 CD1 3MY B 2 30.100 16.657 35.299 1.00 23.82 C HETATM 19 CG 3MY B 2 30.021 15.334 35.755 1.00 22.29 C HETATM 20 CB 3MY B 2 30.637 14.941 37.059 1.00 23.88 C HETATM 21 CA 3MY B 2 29.694 15.321 38.229 1.00 23.43 C HETATM 22 C 3MY B 2 28.311 14.692 38.066 1.00 23.23 C HETATM 23 O 3MY B 2 28.187 13.463 38.184 1.00 26.71 O HETATM 24 N 3MY B 2 29.656 16.788 38.435 1.00 23.70 N HETATM 25 N 3FG B 3 27.270 15.483 37.797 1.00 22.44 N HETATM 26 OD1 3FG B 3 25.281 18.599 41.391 1.00 26.49 O HETATM 27 CD1 3FG B 3 25.093 17.318 40.939 1.00 22.46 C HETATM 28 CG1 3FG B 3 25.532 16.876 39.692 1.00 21.58 C HETATM 29 CZ 3FG B 3 24.389 16.462 41.775 1.00 22.26 C HETATM 30 CD2 3FG B 3 24.150 15.153 41.334 1.00 21.89 C HETATM 31 OD2 3FG B 3 23.482 14.315 42.115 1.00 23.31 O HETATM 32 CG2 3FG B 3 24.620 14.696 40.131 1.00 19.29 C HETATM 33 CB 3FG B 3 25.300 15.559 39.286 1.00 21.88 C HETATM 34 CA 3FG B 3 25.846 15.036 37.994 1.00 22.12 C HETATM 35 C 3FG B 3 24.914 15.302 36.860 1.00 21.00 C HETATM 36 O 3FG B 3 24.187 14.416 36.501 1.00 21.33 O HETATM 37 N GHP B 4 24.907 16.513 36.280 1.00 20.28 N HETATM 38 CA GHP B 4 24.057 16.829 35.140 1.00 19.21 C HETATM 39 C GHP B 4 23.080 17.909 35.489 1.00 19.27 C HETATM 40 O GHP B 4 23.429 18.889 36.167 1.00 18.20 O HETATM 41 C1 GHP B 4 24.825 17.197 33.909 1.00 21.19 C HETATM 42 C2 GHP B 4 26.108 16.667 33.670 1.00 22.29 C HETATM 43 C3 GHP B 4 26.842 16.988 32.513 1.00 23.81 C HETATM 44 C4 GHP B 4 26.254 17.877 31.584 1.00 22.81 C HETATM 45 O4 GHP B 4 26.914 18.195 30.455 1.00 23.73 O HETATM 46 C5 GHP B 4 24.973 18.417 31.781 1.00 23.80 C HETATM 47 C6 GHP B 4 24.282 18.049 32.962 1.00 22.47 C HETATM 48 N GHP B 5 21.842 17.756 35.037 1.00 18.50 N HETATM 49 CA GHP B 5 20.882 18.900 35.042 1.00 20.16 C HETATM 50 C GHP B 5 19.937 18.745 33.860 1.00 22.48 C HETATM 51 O GHP B 5 19.796 17.636 33.311 1.00 21.14 O HETATM 52 C1 GHP B 5 20.029 19.079 36.249 1.00 20.62 C HETATM 53 C2 GHP B 5 20.008 20.286 36.959 1.00 21.81 C HETATM 54 C3 GHP B 5 19.185 20.488 38.077 1.00 23.79 C HETATM 55 C4 GHP B 5 18.359 19.466 38.498 1.00 24.50 C HETATM 56 O4 GHP B 5 17.576 19.668 39.584 1.00 24.80 O HETATM 57 C5 GHP B 5 18.356 18.242 37.825 1.00 24.17 C HETATM 58 C6 GHP B 5 19.182 18.063 36.700 1.00 22.56 C HETATM 59 N OMY B 6 19.261 19.837 33.448 1.00 22.40 N HETATM 60 CA OMY B 6 19.546 21.235 33.889 1.00 23.64 C HETATM 61 OCZ OMY B 6 24.514 19.280 30.774 1.00 24.76 O HETATM 62 CE2 OMY B 6 22.136 19.678 30.693 1.00 24.35 C HETATM 63 CE1 OMY B 6 23.483 21.079 32.186 1.00 30.51 C HETATM 64 CZ OMY B 6 23.403 19.995 31.178 1.00 28.44 C HETATM 65 CG OMY B 6 21.119 21.428 32.081 1.00 26.43 C HETATM 66 CD2 OMY B 6 21.017 20.410 31.129 1.00 24.36 C HETATM 67 CD1 OMY B 6 22.365 21.757 32.602 1.00 28.80 C HETATM 68 CB OMY B 6 19.937 22.121 32.673 1.00 25.20 C HETATM 69 CL OMY B 6 25.018 21.609 32.913 1.00 64.12 CL HETATM 70 O OMY B 6 17.214 21.183 34.600 1.00 22.62 O HETATM 71 C OMY B 6 18.350 21.691 34.733 1.00 24.86 C HETATM 72 ODE OMY B 6 18.824 22.099 31.801 1.00 27.63 O HETATM 73 N 3FG B 7 18.606 22.559 35.697 1.00 24.16 N HETATM 74 OD1 3FG B 7 20.631 20.950 40.369 1.00 25.19 O HETATM 75 CD1 3FG B 7 20.003 22.021 39.830 1.00 27.34 C HETATM 76 CG1 3FG B 7 19.242 21.779 38.700 1.00 25.30 C HETATM 77 CZ 3FG B 7 20.105 23.316 40.361 1.00 30.64 C HETATM 78 CD2 3FG B 7 19.426 24.360 39.754 1.00 33.73 C HETATM 79 OD2 3FG B 7 19.510 25.618 40.264 1.00 32.61 O HETATM 80 CG2 3FG B 7 18.664 24.140 38.622 1.00 32.11 C HETATM 81 CB 3FG B 7 18.567 22.843 38.091 1.00 28.72 C HETATM 82 CA 3FG B 7 17.758 22.629 36.880 1.00 26.67 C HETATM 83 C 3FG B 7 16.754 23.753 36.709 1.00 31.81 C HETATM 84 O 3FG B 7 17.050 24.700 36.004 1.00 30.30 O HETATM 85 OXT 3FG B 7 15.672 23.738 37.270 1.00 32.33 O TER 86 3FG B 7