HEADER LYASE 14-MAY-14 4PKC TITLE BENZYLSUCCINATE ALPHA-GAMMA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUTD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BENZYLSUCCINATE SYNTHASE ALPHA CHAIN; COMPND 5 EC: 4.1.99.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TUTF; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: BENZYLSUCCINATE SYNTHASE GAMMA CHAIN; COMPND 11 EC: 4.1.99.11; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THAUERA AROMATICA; SOURCE 3 ORGANISM_TAXID: 59405; SOURCE 4 STRAIN: T1; SOURCE 5 GENE: TUTD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: THAUERA AROMATICA; SOURCE 11 ORGANISM_TAXID: 59405; SOURCE 12 STRAIN: T1; SOURCE 13 GENE: TUTF; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS COMPLEX, RADICAL, DISORDER, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.FUNK,C.L.DRENNAN REVDAT 5 27-SEP-23 4PKC 1 SOURCE JRNL REMARK REVDAT 4 01-OCT-14 4PKC 1 JRNL REVDAT 3 24-SEP-14 4PKC 1 AUTHOR REVDAT 2 16-JUL-14 4PKC 1 JRNL REVDAT 1 02-JUL-14 4PKC 0 JRNL AUTH M.A.FUNK,E.T.JUDD,E.N.MARSH,S.J.ELLIOTT,C.L.DRENNAN JRNL TITL STRUCTURES OF BENZYLSUCCINATE SYNTHASE ELUCIDATE ROLES OF JRNL TITL 2 ACCESSORY SUBUNITS IN GLYCYL RADICAL ENZYME ACTIVATION AND JRNL TITL 3 ACTIVITY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 10161 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 24982148 JRNL DOI 10.1073/PNAS.1405983111 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1678) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 30711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9810 - 7.2779 1.00 1407 157 0.1873 0.2191 REMARK 3 2 7.2779 - 5.7797 1.00 1337 148 0.2160 0.2471 REMARK 3 3 5.7797 - 5.0499 1.00 1316 148 0.1959 0.2281 REMARK 3 4 5.0499 - 4.5886 1.00 1287 141 0.1747 0.2099 REMARK 3 5 4.5886 - 4.2599 1.00 1300 143 0.1827 0.2215 REMARK 3 6 4.2599 - 4.0089 1.00 1282 145 0.1742 0.2030 REMARK 3 7 4.0089 - 3.8082 1.00 1270 140 0.1877 0.2155 REMARK 3 8 3.8082 - 3.6425 1.00 1269 143 0.1972 0.2402 REMARK 3 9 3.6425 - 3.5023 1.00 1289 141 0.2139 0.3157 REMARK 3 10 3.5023 - 3.3815 1.00 1255 138 0.2255 0.2451 REMARK 3 11 3.3815 - 3.2757 1.00 1270 145 0.2370 0.2964 REMARK 3 12 3.2757 - 3.1821 1.00 1261 137 0.2432 0.3189 REMARK 3 13 3.1821 - 3.0984 1.00 1275 144 0.2539 0.3363 REMARK 3 14 3.0984 - 3.0228 1.00 1249 141 0.2642 0.2381 REMARK 3 15 3.0228 - 2.9541 1.00 1271 139 0.2731 0.3498 REMARK 3 16 2.9541 - 2.8912 1.00 1255 139 0.2838 0.3389 REMARK 3 17 2.8912 - 2.8334 0.99 1254 140 0.2976 0.3407 REMARK 3 18 2.8334 - 2.7799 0.96 1197 133 0.3112 0.3699 REMARK 3 19 2.7799 - 2.7303 0.96 1207 139 0.3238 0.3692 REMARK 3 20 2.7303 - 2.6840 0.91 1139 129 0.3304 0.3566 REMARK 3 21 2.6840 - 2.6407 0.92 1152 138 0.3328 0.3768 REMARK 3 22 2.6407 - 2.6000 0.86 1086 115 0.3347 0.3241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7158 REMARK 3 ANGLE : 0.567 9671 REMARK 3 CHIRALITY : 0.023 1019 REMARK 3 PLANARITY : 0.003 1268 REMARK 3 DIHEDRAL : 10.266 2681 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30845 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.052 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4PKF REMARK 200 REMARK 200 REMARK: LARGE YELLOW CABOUCHON WITH ROUNDED EDGES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 PROTEIN (~10 MG/ML IN 20 MM HEPES, REMARK 280 PH 7.5, 100 MM SODIUM CHLORIDE) TO WELL SOLUTION (20-25% PEG400, REMARK 280 50 MM TRIS, PH 8.0, 50 MM BIS-TRIS, PH 6.5), DIFFRACTION-QUALITY REMARK 280 CRYSTALS TYPICALLY GREW WITHIN 1 WEEK, CRYOPROTECTANT: BRIEF REMARK 280 SOAK IN 30% PEG400 + THE SAME BUFFER, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.08550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 77.43200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 77.43200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.62825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 77.43200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 77.43200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.54275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 77.43200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.43200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.62825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 77.43200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.43200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.54275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.08550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 465 VAL A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 LYS A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 GLU A 12 REMARK 465 TYR A 13 REMARK 465 LYS A 14 REMARK 465 GLY A 15 REMARK 465 LYS A 16 REMARK 465 LYS A 17 REMARK 465 ASN A 761 REMARK 465 GLN A 762 REMARK 465 LYS A 763 REMARK 465 GLY A 764 REMARK 465 ASN A 765 REMARK 465 SER A 866 REMARK 465 GLY A 867 REMARK 465 THR A 868 REMARK 465 GLY A 869 REMARK 465 SER A 870 REMARK 465 GLY A 871 REMARK 465 SER A 872 REMARK 465 SER A 873 REMARK 465 HIS A 874 REMARK 465 HIS A 875 REMARK 465 HIS A 876 REMARK 465 HIS A 877 REMARK 465 HIS A 878 REMARK 465 HIS A 879 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 THR C 3 REMARK 465 THR C 4 REMARK 465 THR C 5 REMARK 465 CYS C 6 REMARK 465 LYS C 7 REMARK 465 GLN C 8 REMARK 465 SER C 50 REMARK 465 ALA C 51 REMARK 465 GLN C 52 REMARK 465 CYS C 53 REMARK 465 GLU C 54 REMARK 465 ALA C 55 REMARK 465 PHE C 56 REMARK 465 GLN C 57 REMARK 465 THR C 58 REMARK 465 LYS C 59 REMARK 465 ARG C 60 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 18 CG CD1 CD2 REMARK 470 GLN A 707 CG CD OE1 NE2 REMARK 470 ASP A 734 CG OD1 OD2 REMARK 470 THR A 749 OG1 CG2 REMARK 470 TYR A 840 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 864 CG CD OE1 OE2 REMARK 470 CYS C 9 SG REMARK 470 PHE C 12 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 48 CG CD OE1 OE2 REMARK 470 ASN C 49 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 44 O HOH C 109 2.10 REMARK 500 OD2 ASP A 123 O HOH A 1181 2.11 REMARK 500 O ALA A 375 NH1 ARG A 382 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 20 53.77 -97.62 REMARK 500 GLU A 34 35.71 -147.96 REMARK 500 LYS A 41 76.52 -152.83 REMARK 500 ASP A 113 -4.89 63.06 REMARK 500 LEU A 133 -84.49 -97.50 REMARK 500 SER A 186 -54.27 -128.29 REMARK 500 ALA A 322 -53.41 -140.48 REMARK 500 TYR A 330 32.61 -155.20 REMARK 500 LEU A 492 -109.80 -127.92 REMARK 500 ASN A 526 30.55 -148.37 REMARK 500 TYR A 533 -77.49 -108.47 REMARK 500 LYS A 541 83.45 -69.85 REMARK 500 ASN A 611 51.50 -157.40 REMARK 500 ILE A 686 -62.82 -97.54 REMARK 500 PRO A 723 11.87 -61.21 REMARK 500 ALA A 732 -139.02 -155.69 REMARK 500 ILE A 737 -7.02 -144.24 REMARK 500 VAL A 827 -73.24 -85.03 REMARK 500 SER A 828 -92.73 -130.13 REMARK 500 GLU C 34 119.34 -160.17 REMARK 500 ASP C 35 -159.00 -108.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 902 DBREF 4PKC A 2 865 UNP O68395 O68395_THAAR 1 864 DBREF 4PKC C 1 60 UNP O68394 O68394_THAAR 1 60 SEQADV 4PKC ILE A 789 UNP O68395 MET 788 VARIANT SEQADV 4PKC SER A 866 UNP O68395 EXPRESSION TAG SEQADV 4PKC GLY A 867 UNP O68395 EXPRESSION TAG SEQADV 4PKC THR A 868 UNP O68395 EXPRESSION TAG SEQADV 4PKC GLY A 869 UNP O68395 EXPRESSION TAG SEQADV 4PKC SER A 870 UNP O68395 EXPRESSION TAG SEQADV 4PKC GLY A 871 UNP O68395 EXPRESSION TAG SEQADV 4PKC SER A 872 UNP O68395 EXPRESSION TAG SEQADV 4PKC SER A 873 UNP O68395 EXPRESSION TAG SEQADV 4PKC HIS A 874 UNP O68395 EXPRESSION TAG SEQADV 4PKC HIS A 875 UNP O68395 EXPRESSION TAG SEQADV 4PKC HIS A 876 UNP O68395 EXPRESSION TAG SEQADV 4PKC HIS A 877 UNP O68395 EXPRESSION TAG SEQADV 4PKC HIS A 878 UNP O68395 EXPRESSION TAG SEQADV 4PKC HIS A 879 UNP O68395 EXPRESSION TAG SEQRES 1 A 878 MET ASN ASP ILE VAL SER ALA LYS VAL LEU GLU TYR LYS SEQRES 2 A 878 GLY LYS LYS LEU ASN PHE THR PRO GLU ASP PRO ALA GLU SEQRES 3 A 878 GLU THR ILE PRO ALA ASP GLU LEU HIS GLU HIS LEU GLN SEQRES 4 A 878 LYS PRO SER THR ALA ARG THR LYS ARG LEU LYS GLU ARG SEQRES 5 A 878 CYS ARG TRP LYS HIS ALA SER ALA GLY GLU PHE ILE GLU SEQRES 6 A 878 LYS SER VAL THR ALA GLY ILE GLU ARG MET ARG TYR LEU SEQRES 7 A 878 THR GLU ALA HIS LYS ALA SER GLU GLY LYS PRO GLU ALA SEQRES 8 A 878 ILE ARG ARG ALA LEU GLY LEU ALA ASN VAL LEU ASN LYS SEQRES 9 A 878 SER THR LEU VAL LEU GLN GLU ASP GLU PHE ILE VAL GLY SEQRES 10 A 878 TYR HIS ALA GLU ASP PRO ASN MET PHE PRO LEU TYR PRO SEQRES 11 A 878 GLU LEU SER HIS MET ALA VAL GLN ASP TYR LEU ARG SER SEQRES 12 A 878 ASP TYR SER PRO GLN PRO ALA ASP GLU ALA ALA ALA ILE SEQRES 13 A 878 ASN GLU TYR TRP LYS PRO HIS SER LEU GLN SER LYS CYS SEQRES 14 A 878 GLN PRO TYR PHE ASP PRO ALA ASP LEU GLY ARG MET TYR SEQRES 15 A 878 GLN VAL SER SER MET GLU ALA PRO SER PHE ALA SER GLY SEQRES 16 A 878 TYR ASN SER ILE VAL PRO PRO TYR GLU THR VAL LEU GLU SEQRES 17 A 878 ASP GLY LEU LEU ALA ARG ILE LYS LEU ALA GLU LYS HIS SEQRES 18 A 878 ILE ALA GLU ALA GLN ALA ASP MET SER THR PHE PRO TRP SEQRES 19 A 878 ASN GLY THR LYS GLY LEU ASP ASN ILE ALA LYS ILE ASP SEQRES 20 A 878 ASN TRP LYS ALA MET VAL ILE ALA CYS LYS ALA VAL ILE SEQRES 21 A 878 SER TRP ALA ARG ARG GLN GLY ARG LEU CYS LYS ILE VAL SEQRES 22 A 878 ALA GLU ASN PHE GLU THR ASP PRO LYS ARG GLN ALA GLU SEQRES 23 A 878 LEU LEU GLU ILE ALA ASP ILE CYS GLN ARG ILE PRO ALA SEQRES 24 A 878 GLU PRO CYS LYS GLY LEU LYS ASP ALA MET GLN ALA LYS SEQRES 25 A 878 PHE PHE THR PHE LEU ILE CYS HIS ALA ILE GLU ARG TYR SEQRES 26 A 878 ALA SER GLY TYR ALA GLN LYS GLU ASP THR LEU LEU TRP SEQRES 27 A 878 PRO TYR TYR LYS ALA SER VAL VAL ASP LYS LYS PHE GLN SEQRES 28 A 878 PRO MET SER HIS MET ASP ALA VAL GLU LEU VAL GLU MET SEQRES 29 A 878 GLU ARG LEU LYS ILE SER GLU HIS GLY ALA GLY LYS SER SEQRES 30 A 878 ARG ALA TYR ARG GLU ILE PHE PRO GLY SER ASN ASP LEU SEQRES 31 A 878 PHE ILE LEU THR VAL GLY GLY THR ASN ALA LYS GLY GLU SEQRES 32 A 878 ASP ALA CYS ASN ASP MET THR ASP ALA ILE LEU GLU ALA SEQRES 33 A 878 ALA LYS ARG ILE ARG THR ALA GLU PRO SER ILE VAL PHE SEQRES 34 A 878 ARG TYR SER LYS LYS ASN ARG GLU LYS THR LEU ARG TRP SEQRES 35 A 878 VAL PHE GLU CYS ILE ARG ASP GLY LEU GLY TYR PRO SER SEQRES 36 A 878 ILE LYS HIS ASP GLU ILE GLY THR GLU GLN MET LYS GLU SEQRES 37 A 878 TYR ALA LYS PHE SER LEU ASN GLY ASN GLY ALA THR ASP SEQRES 38 A 878 GLU GLU ALA HIS ASN TRP VAL ASN VAL LEU CYS MET SER SEQRES 39 A 878 PRO GLY ILE HIS GLY ARG ARG LYS THR GLN LYS THR ARG SEQRES 40 A 878 SER GLU GLY GLY GLY SER ILE PHE PRO ALA LYS LEU LEU SEQRES 41 A 878 GLU ILE SER LEU ASN ASP GLY TYR ASP TRP SER TYR ALA SEQRES 42 A 878 ASP MET GLN LEU GLY PRO LYS THR GLY ASP LEU SER SER SEQRES 43 A 878 LEU LYS SER PHE GLU ASP VAL TRP GLU ALA PHE ARG LYS SEQRES 44 A 878 GLN TYR GLN TYR ALA ILE ASN LEU CYS ILE SER THR LYS SEQRES 45 A 878 ASP VAL SER ARG TYR PHE GLU GLN ARG PHE LEU GLN MET SEQRES 46 A 878 PRO PHE VAL SER ALA ILE ASP ASP GLY CYS MET GLU LEU SEQRES 47 A 878 GLY MET ASP ALA CYS ALA LEU SER GLU GLN PRO ASN GLY SEQRES 48 A 878 TRP HIS ASN PRO ILE THR THR ILE VAL ALA ALA ASN SER SEQRES 49 A 878 LEU VAL ALA ILE LYS LYS LEU VAL PHE GLU GLU LYS LYS SEQRES 50 A 878 TYR THR LEU GLU GLN LEU SER GLN ALA LEU LYS ALA ASN SEQRES 51 A 878 TRP GLU GLY PHE GLU GLU MET ARG VAL ASP PHE LYS ARG SEQRES 52 A 878 ALA PRO LYS TRP GLY ASN ASP ASP ASP TYR ALA ASP GLY SEQRES 53 A 878 ILE ILE THR ARG PHE TYR GLU GLU ILE ILE GLY GLY GLU SEQRES 54 A 878 MET ARG LYS ILE THR ASN TYR SER GLY GLY PRO VAL MET SEQRES 55 A 878 PRO THR GLY GLN ALA VAL GLY LEU TYR MET GLU VAL GLY SEQRES 56 A 878 SER ARG THR GLY PRO THR PRO ASP GLY ARG PHE GLY GLY SEQRES 57 A 878 GLU ALA ALA ASP ASP GLY GLY ILE SER PRO TYR MET GLY SEQRES 58 A 878 THR ASP LYS LYS GLY PRO THR ALA VAL LEU ARG SER VAL SEQRES 59 A 878 SER LYS VAL GLN LYS ASN GLN LYS GLY ASN LEU LEU ASN SEQRES 60 A 878 GLN ARG LEU SER VAL PRO ILE MET ARG SER LYS HIS GLY SEQRES 61 A 878 PHE GLU ILE TRP ASN SER TYR ILE LYS THR TRP HIS ASP SEQRES 62 A 878 LEU ASN ILE ASP HIS VAL GLN PHE ASN VAL VAL SER THR SEQRES 63 A 878 ASP GLU MET ARG ALA ALA GLN ARG GLU PRO GLU LYS HIS SEQRES 64 A 878 HIS ASP LEU ILE VAL ARG VAL SER GLY TYR SER ALA ARG SEQRES 65 A 878 PHE VAL ASP ILE PRO THR TYR GLY GLN ASN THR ILE ILE SEQRES 66 A 878 ALA ARG GLN GLU GLN ASP PHE SER ALA SER ASP LEU GLU SEQRES 67 A 878 PHE LEU ASN VAL GLU ILE SER GLY THR GLY SER GLY SER SEQRES 68 A 878 SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 60 MET GLY THR THR THR CYS LYS GLN CYS ALA ASN PHE PHE SEQRES 2 C 60 PRO VAL PRO LYS ASP ALA ASP ASP TYR GLU ALA GLY LYS SEQRES 3 C 60 ALA ASP CYS VAL ARG GLU LYS GLU ASP GLU LYS GLY LYS SEQRES 4 C 60 TYR TRP LEU SER LYS PRO ILE PHE GLU ASN SER ALA GLN SEQRES 5 C 60 CYS GLU ALA PHE GLN THR LYS ARG HET CL A 901 1 HET GOL A 902 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL CL 1- FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *194(H2 O) HELIX 1 AA1 ASP A 24 THR A 29 5 6 HELIX 2 AA2 PRO A 31 HIS A 38 5 8 HELIX 3 AA3 THR A 44 ARG A 53 1 10 HELIX 4 AA4 ILE A 73 SER A 86 1 14 HELIX 5 AA5 PRO A 90 SER A 106 1 17 HELIX 6 AA6 SER A 134 ARG A 143 1 10 HELIX 7 AA7 PRO A 150 LYS A 162 1 13 HELIX 8 AA8 SER A 165 GLN A 171 1 7 HELIX 9 AA9 PRO A 172 PHE A 174 5 3 HELIX 10 AB1 ASP A 175 GLN A 184 1 10 HELIX 11 AB2 PRO A 191 GLY A 196 1 6 HELIX 12 AB3 PRO A 203 GLY A 211 1 9 HELIX 13 AB4 GLY A 211 SER A 231 1 21 HELIX 14 AB5 LYS A 239 LEU A 241 5 3 HELIX 15 AB6 ASP A 242 PHE A 278 1 37 HELIX 16 AB7 ASP A 281 ILE A 298 1 18 HELIX 17 AB8 GLY A 305 ALA A 322 1 18 HELIX 18 AB9 LYS A 333 VAL A 346 1 14 HELIX 19 AC1 SER A 355 GLU A 372 1 18 HELIX 20 AC2 ARG A 379 ILE A 384 1 6 HELIX 21 AC3 ASN A 408 ARG A 422 1 15 HELIX 22 AC4 ARG A 437 ASP A 450 1 14 HELIX 23 AC5 ASP A 460 LYS A 472 1 13 HELIX 24 AC6 GLU A 483 HIS A 486 5 4 HELIX 25 AC7 PHE A 516 LEU A 525 1 10 HELIX 26 AC8 SER A 550 LEU A 584 1 35 HELIX 27 AC9 MET A 586 ILE A 592 1 7 HELIX 28 AD1 ASP A 593 GLY A 600 1 8 HELIX 29 AD2 THR A 618 PHE A 634 1 17 HELIX 30 AD3 THR A 640 ALA A 650 1 11 HELIX 31 AD4 PHE A 655 ALA A 665 1 11 HELIX 32 AD5 ASP A 672 ILE A 686 1 15 HELIX 33 AD6 GLY A 688 LYS A 693 1 6 HELIX 34 AD7 GLY A 710 THR A 719 1 10 HELIX 35 AD8 GLY A 747 SER A 756 1 10 HELIX 36 AD9 SER A 772 ARG A 777 1 6 HELIX 37 AE1 HIS A 780 LEU A 795 1 16 HELIX 38 AE2 SER A 806 GLU A 816 1 11 HELIX 39 AE3 PRO A 817 HIS A 820 5 4 HELIX 40 AE4 VAL A 835 ILE A 837 5 3 HELIX 41 AE5 PRO A 838 ALA A 847 1 10 HELIX 42 AE6 SER A 854 LEU A 861 1 8 SHEET 1 AA1 2 ALA A 59 SER A 60 0 SHEET 2 AA1 2 GLU A 63 PHE A 64 -1 O GLU A 63 N SER A 60 SHEET 1 AA2 2 THR A 70 ALA A 71 0 SHEET 2 AA2 2 MET A 126 PHE A 127 1 O PHE A 127 N THR A 70 SHEET 1 AA3 4 LEU A 108 GLN A 111 0 SHEET 2 AA3 4 LYS C 39 PHE C 47 -1 O TRP C 41 N LEU A 110 SHEET 3 AA3 4 LYS C 26 GLU C 34 -1 N CYS C 29 O LYS C 44 SHEET 4 AA3 4 ASN C 11 PRO C 14 -1 N PHE C 13 O ASP C 28 SHEET 1 AA4 5 ILE A 393 GLY A 397 0 SHEET 2 AA4 5 SER A 427 TYR A 432 1 O VAL A 429 N LEU A 394 SHEET 3 AA4 5 SER A 456 HIS A 459 1 O SER A 456 N PHE A 430 SHEET 4 AA4 5 HIS A 799 ASN A 803 -1 O VAL A 800 N ILE A 457 SHEET 5 AA4 5 ASN A 768 ARG A 770 1 N GLN A 769 O ASN A 803 SHEET 1 AA5 2 TRP A 488 ASN A 490 0 SHEET 2 AA5 2 PRO A 496 ILE A 498 -1 O GLY A 497 N VAL A 489 SHEET 1 AA6 3 SER A 514 ILE A 515 0 SHEET 2 AA6 3 TRP A 613 PRO A 616 1 O ASN A 615 N ILE A 515 SHEET 3 AA6 3 MET A 703 PRO A 704 1 O MET A 703 N HIS A 614 SHEET 1 AA7 2 TYR A 529 ASP A 530 0 SHEET 2 AA7 2 MET A 536 GLN A 537 -1 O MET A 536 N ASP A 530 SHEET 1 AA8 2 ILE A 824 ARG A 826 0 SHEET 2 AA8 2 SER A 831 ARG A 833 -1 O ALA A 832 N VAL A 825 CISPEP 1 GLN A 149 PRO A 150 0 -2.13 CISPEP 2 PHE A 233 PRO A 234 0 -0.35 CISPEP 3 ILE A 298 PRO A 299 0 3.71 CISPEP 4 GLU A 425 PRO A 426 0 1.20 CISPEP 5 TYR A 454 PRO A 455 0 1.73 CISPEP 6 ALA A 731 ALA A 732 0 -8.59 SITE 1 AC1 4 LEU A 492 CYS A 493 MET A 494 SER A 495 SITE 1 AC2 3 LYS A 439 TRP A 443 GLU A 446 CRYST1 154.864 154.864 82.171 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006457 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012170 0.00000