HEADER HYDROLASE/HYDROLASE INHIBITOR 15-MAY-14 4PKW TITLE ANTHRAX TOXIN LETHAL FACTOR WITH BOUND SMALL MOLECULE INHIBITOR GM6001 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LETHAL FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 298-809; COMPND 5 SYNONYM: LF,ANTHRAX LETHAL TOXIN ENDOPEPTIDASE COMPONENT; COMPND 6 EC: 3.4.24.83; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 GENE: LEF, PXO1-107, BXA0172, GBAA_PXO1_0172; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG10 KEYWDS ANTHRAX TOXIN, LETHAL FACTOR, METALLOPROTEINASE, METALLOPROTEASE, KEYWDS 2 STRUCTURAL DYNAMICS, LIGAND-INDUCED CONFORMATIONAL CHANGE, KEYWDS 3 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.M.MAIZE,T.DE LA MORA,B.C.FINZEL REVDAT 5 27-DEC-23 4PKW 1 REMARK REVDAT 4 11-DEC-19 4PKW 1 REMARK REVDAT 3 27-SEP-17 4PKW 1 SOURCE REMARK REVDAT 2 26-NOV-14 4PKW 1 JRNL REVDAT 1 12-NOV-14 4PKW 0 JRNL AUTH K.M.MAIZE,E.K.KURBANOV,T.DE LA MORA-REY,T.W.GEDERS, JRNL AUTH 2 D.J.HWANG,M.A.WALTERS,R.L.JOHNSON,E.A.AMIN,B.C.FINZEL JRNL TITL ANTHRAX TOXIN LETHAL FACTOR DOMAIN 3 IS HIGHLY MOBILE AND JRNL TITL 2 RESPONSIVE TO LIGAND BINDING. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2813 2014 JRNL REFN ESSN 1399-0047 JRNL PMID 25372673 JRNL DOI 10.1107/S1399004714018161 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 56769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3921 - 4.8257 1.00 2763 151 0.1791 0.1834 REMARK 3 2 4.8257 - 3.8312 1.00 2639 148 0.1461 0.1698 REMARK 3 3 3.8312 - 3.3471 1.00 2602 141 0.1670 0.2006 REMARK 3 4 3.3471 - 3.0412 1.00 2570 150 0.1823 0.2037 REMARK 3 5 3.0412 - 2.8233 1.00 2616 127 0.1924 0.2219 REMARK 3 6 2.8233 - 2.6569 1.00 2578 118 0.1857 0.2212 REMARK 3 7 2.6569 - 2.5238 1.00 2601 125 0.1883 0.2441 REMARK 3 8 2.5238 - 2.4140 1.00 2550 121 0.1837 0.2259 REMARK 3 9 2.4140 - 2.3210 1.00 2560 137 0.1840 0.1969 REMARK 3 10 2.3210 - 2.2410 1.00 2536 147 0.1806 0.2309 REMARK 3 11 2.2410 - 2.1709 1.00 2523 160 0.1713 0.2030 REMARK 3 12 2.1709 - 2.1088 1.00 2521 151 0.1815 0.2336 REMARK 3 13 2.1088 - 2.0533 1.00 2529 150 0.1836 0.2221 REMARK 3 14 2.0533 - 2.0032 1.00 2534 144 0.1807 0.2228 REMARK 3 15 2.0032 - 1.9577 1.00 2552 140 0.1811 0.1928 REMARK 3 16 1.9577 - 1.9160 1.00 2512 123 0.1780 0.2299 REMARK 3 17 1.9160 - 1.8777 1.00 2554 140 0.1771 0.2334 REMARK 3 18 1.8777 - 1.8423 1.00 2517 141 0.1887 0.2424 REMARK 3 19 1.8423 - 1.8094 1.00 2549 139 0.2016 0.2657 REMARK 3 20 1.8094 - 1.7787 1.00 2533 122 0.2116 0.2277 REMARK 3 21 1.7787 - 1.7500 1.00 2552 103 0.2097 0.2848 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4144 REMARK 3 ANGLE : 1.056 5589 REMARK 3 CHIRALITY : 0.043 616 REMARK 3 PLANARITY : 0.005 719 REMARK 3 DIHEDRAL : 14.533 1575 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56847 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 130.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-16% PEG 8K, 50 MM BIS-TRIS, 100 MM REMARK 280 MAGNESIUM ACETATE, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.71350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.27500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.27500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.71350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 262 REMARK 465 ASN A 263 REMARK 465 ALA A 264 REMARK 465 LEU A 265 REMARK 465 SER A 348 REMARK 465 LEU A 349 REMARK 465 SER A 350 REMARK 465 GLU A 351 REMARK 465 GLU A 352 REMARK 465 GLU A 353 REMARK 465 LYS A 354 REMARK 465 GLU A 355 REMARK 465 LEU A 356 REMARK 465 LEU A 357 REMARK 465 ASN A 358 REMARK 465 ARG A 359 REMARK 465 ILE A 360 REMARK 465 GLN A 361 REMARK 465 VAL A 362 REMARK 465 ASP A 363 REMARK 465 SER A 364 REMARK 465 SER A 365 REMARK 465 ASN A 366 REMARK 465 PRO A 367 REMARK 465 LEU A 777 REMARK 465 VAL A 778 REMARK 465 PRO A 779 REMARK 465 ARG A 780 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 GLN A 313 CG CD OE1 NE2 REMARK 470 GLU A 314 CG CD OE1 OE2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 GLN A 323 CG CD OE1 NE2 REMARK 470 GLU A 333 CD OE1 OE2 REMARK 470 LYS A 340 CD CE NZ REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 LYS A 473 CE NZ REMARK 470 ASP A 508 CG OD1 OD2 REMARK 470 GLU A 539 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1232 O HOH A 1265 2.08 REMARK 500 O HOH A 1047 O HOH A 1210 2.17 REMARK 500 O HOH A 1202 O HOH A 1216 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 482 -169.21 -110.95 REMARK 500 ASN A 516 30.06 74.60 REMARK 500 TYR A 579 -0.01 77.34 REMARK 500 ASN A 589 -167.12 -126.71 REMARK 500 ASP A 701 85.89 -153.20 REMARK 500 LEU A 725 -124.27 -117.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 686 NE2 REMARK 620 2 HIS A 690 NE2 98.8 REMARK 620 3 GLU A 735 OE1 92.6 95.7 REMARK 620 4 GM6 A 802 OAE 97.7 163.5 84.5 REMARK 620 5 GM6 A 802 OAG 104.2 95.5 158.1 79.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GM6 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 806 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JKY RELATED DB: PDB REMARK 900 THE FULL-LENGTH PROTEIN IN A I4132 SPACEGROUP REMARK 900 RELATED ID: 1J7N RELATED DB: PDB REMARK 900 THE FULL-LENGTH PROTEIN WITH BOUND ZINC IN A P21 SPACEGROUP REMARK 900 RELATED ID: 1PWP RELATED DB: PDB REMARK 900 THE FULL-LENGTH PROTEIN COMPLEXED WITH SMALL MOLECULE INHIBITOR NSC REMARK 900 12155 IN A P21 SPACEGROUP REMARK 900 RELATED ID: 1PWQ RELATED DB: PDB REMARK 900 THE FULL-LENGTH PROTEIN COMPLEXED WITH A METAL-CHELATING PEPTIDYL REMARK 900 SMALL MOLECULE INHIBITOR IN A P21 SPACEGROUP REMARK 900 RELATED ID: 1PWU RELATED DB: PDB REMARK 900 THE FULL-LENGTH PROTEIN COMPLEXED WITH GM6001 IN A P21 SPACEGROUP REMARK 900 RELATED ID: 1PWV RELATED DB: PDB REMARK 900 THE FULL-LENGTH PROTEIN COMPLEXED WITH AN OPTIMIZED PEPTIDE REMARK 900 SUBSTRATE IN A P21 SPACEGROUP REMARK 900 RELATED ID: 1PWW RELATED DB: PDB REMARK 900 THE FULL-LENGTH INACTIVE MUTANT PROTEIN COMPLEXED WITH AN OPTIMIZED REMARK 900 PEPTIDE SUBSTRATE AND ZINC IN A P21 SPACEGROUP. REMARK 900 RELATED ID: 1ZXV RELATED DB: PDB REMARK 900 THE FULL-LENGTH PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR REMARK 900 IN A P21 SPACEGROUP REMARK 900 RELATED ID: 1YQY RELATED DB: PDB REMARK 900 THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE REMARK 900 INHIBITOR IN A P212121 SPACEGROUP REMARK 900 RELATED ID: 4DV8 RELATED DB: PDB REMARK 900 THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE REMARK 900 INHIBITOR IN A P212121 SPACEGROUP REMARK 900 RELATED ID: 4PKQ RELATED DB: PDB REMARK 900 RELATED ID: 4PKR RELATED DB: PDB REMARK 900 RELATED ID: 4PKS RELATED DB: PDB REMARK 900 RELATED ID: 4PKT RELATED DB: PDB REMARK 900 RELATED ID: 4PKU RELATED DB: PDB REMARK 900 RELATED ID: 4PKV RELATED DB: PDB DBREF 4PKW A 265 776 UNP P15917 LEF_BACAN 298 809 SEQADV 4PKW SER A 262 UNP P15917 EXPRESSION TAG SEQADV 4PKW ASN A 263 UNP P15917 EXPRESSION TAG SEQADV 4PKW ALA A 264 UNP P15917 EXPRESSION TAG SEQADV 4PKW SER A 266 UNP P15917 ALA 299 ENGINEERED MUTATION SEQADV 4PKW LEU A 777 UNP P15917 EXPRESSION TAG SEQADV 4PKW VAL A 778 UNP P15917 EXPRESSION TAG SEQADV 4PKW PRO A 779 UNP P15917 EXPRESSION TAG SEQADV 4PKW ARG A 780 UNP P15917 EXPRESSION TAG SEQRES 1 A 519 SER ASN ALA LEU SER ARG TYR GLU LYS TRP GLU LYS ILE SEQRES 2 A 519 LYS GLN HIS TYR GLN HIS TRP SER ASP SER LEU SER GLU SEQRES 3 A 519 GLU GLY ARG GLY LEU LEU LYS LYS LEU GLN ILE PRO ILE SEQRES 4 A 519 GLU PRO LYS LYS ASP ASP ILE ILE HIS SER LEU SER GLN SEQRES 5 A 519 GLU GLU LYS GLU LEU LEU LYS ARG ILE GLN ILE ASP SER SEQRES 6 A 519 SER ASP PHE LEU SER THR GLU GLU LYS GLU PHE LEU LYS SEQRES 7 A 519 LYS LEU GLN ILE ASP ILE ARG ASP SER LEU SER GLU GLU SEQRES 8 A 519 GLU LYS GLU LEU LEU ASN ARG ILE GLN VAL ASP SER SER SEQRES 9 A 519 ASN PRO LEU SER GLU LYS GLU LYS GLU PHE LEU LYS LYS SEQRES 10 A 519 LEU LYS LEU ASP ILE GLN PRO TYR ASP ILE ASN GLN ARG SEQRES 11 A 519 LEU GLN ASP THR GLY GLY LEU ILE ASP SER PRO SER ILE SEQRES 12 A 519 ASN LEU ASP VAL ARG LYS GLN TYR LYS ARG ASP ILE GLN SEQRES 13 A 519 ASN ILE ASP ALA LEU LEU HIS GLN SER ILE GLY SER THR SEQRES 14 A 519 LEU TYR ASN LYS ILE TYR LEU TYR GLU ASN MET ASN ILE SEQRES 15 A 519 ASN ASN LEU THR ALA THR LEU GLY ALA ASP LEU VAL ASP SEQRES 16 A 519 SER THR ASP ASN THR LYS ILE ASN ARG GLY ILE PHE ASN SEQRES 17 A 519 GLU PHE LYS LYS ASN PHE LYS TYR SER ILE SER SER ASN SEQRES 18 A 519 TYR MET ILE VAL ASP ILE ASN GLU ARG PRO ALA LEU ASP SEQRES 19 A 519 ASN GLU ARG LEU LYS TRP ARG ILE GLN LEU SER PRO ASP SEQRES 20 A 519 THR ARG ALA GLY TYR LEU GLU ASN GLY LYS LEU ILE LEU SEQRES 21 A 519 GLN ARG ASN ILE GLY LEU GLU ILE LYS ASP VAL GLN ILE SEQRES 22 A 519 ILE LYS GLN SER GLU LYS GLU TYR ILE ARG ILE ASP ALA SEQRES 23 A 519 LYS VAL VAL PRO LYS SER LYS ILE ASP THR LYS ILE GLN SEQRES 24 A 519 GLU ALA GLN LEU ASN ILE ASN GLN GLU TRP ASN LYS ALA SEQRES 25 A 519 LEU GLY LEU PRO LYS TYR THR LYS LEU ILE THR PHE ASN SEQRES 26 A 519 VAL HIS ASN ARG TYR ALA SER ASN ILE VAL GLU SER ALA SEQRES 27 A 519 TYR LEU ILE LEU ASN GLU TRP LYS ASN ASN ILE GLN SER SEQRES 28 A 519 ASP LEU ILE LYS LYS VAL THR ASN TYR LEU VAL ASP GLY SEQRES 29 A 519 ASN GLY ARG PHE VAL PHE THR ASP ILE THR LEU PRO ASN SEQRES 30 A 519 ILE ALA GLU GLN TYR THR HIS GLN ASP GLU ILE TYR GLU SEQRES 31 A 519 GLN VAL HIS SER LYS GLY LEU TYR VAL PRO GLU SER ARG SEQRES 32 A 519 SER ILE LEU LEU HIS GLY PRO SER LYS GLY VAL GLU LEU SEQRES 33 A 519 ARG ASN ASP SER GLU GLY PHE ILE HIS GLU PHE GLY HIS SEQRES 34 A 519 ALA VAL ASP ASP TYR ALA GLY TYR LEU LEU ASP LYS ASN SEQRES 35 A 519 GLN SER ASP LEU VAL THR ASN SER LYS LYS PHE ILE ASP SEQRES 36 A 519 ILE PHE LYS GLU GLU GLY SER ASN LEU THR SER TYR GLY SEQRES 37 A 519 ARG THR ASN GLU ALA GLU PHE PHE ALA GLU ALA PHE ARG SEQRES 38 A 519 LEU MET HIS SER THR ASP HIS ALA GLU ARG LEU LYS VAL SEQRES 39 A 519 GLN LYS ASN ALA PRO LYS THR PHE GLN PHE ILE ASN ASP SEQRES 40 A 519 GLN ILE LYS PHE ILE ILE ASN SER LEU VAL PRO ARG HET ZN A 801 1 HET GM6 A 802 52 HET GOL A 803 6 HET GOL A 804 6 HET EDO A 805 4 HET EDO A 806 4 HETNAM ZN ZINC ION HETNAM GM6 3-(N-HYDROXYCARBOXAMIDO)-2-ISOBUTYLPROPANOYL-TRP- HETNAM 2 GM6 METHYLAMIDE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GM6 GM6001 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 GM6 C20 H28 N4 O4 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *386(H2 O) HELIX 1 AA1 SER A 266 TYR A 278 1 13 HELIX 2 AA2 TYR A 278 SER A 284 1 7 HELIX 3 AA3 SER A 286 ILE A 298 1 13 HELIX 4 AA4 LYS A 303 LEU A 311 1 9 HELIX 5 AA5 SER A 312 ILE A 322 1 11 HELIX 6 AA6 GLN A 323 SER A 327 5 5 HELIX 7 AA7 SER A 331 ASP A 347 1 17 HELIX 8 AA8 SER A 369 LYS A 380 1 12 HELIX 9 AA9 LEU A 381 GLN A 384 5 4 HELIX 10 AB1 ASP A 387 GLY A 396 1 10 HELIX 11 AB2 ASN A 405 LEU A 423 1 19 HELIX 12 AB3 ASN A 442 LEU A 446 5 5 HELIX 13 AB4 THR A 447 ALA A 452 1 6 HELIX 14 AB5 ASN A 464 ASN A 474 1 11 HELIX 15 AB6 PRO A 551 GLY A 575 1 25 HELIX 16 AB7 TYR A 591 ILE A 610 1 20 HELIX 17 AB8 GLN A 611 GLY A 625 1 15 HELIX 18 AB9 THR A 635 ASN A 638 5 4 HELIX 19 AC1 ILE A 639 THR A 644 1 6 HELIX 20 AC2 GLU A 648 GLN A 652 5 5 HELIX 21 AC3 PRO A 661 ARG A 664 5 4 HELIX 22 AC4 ASN A 679 ASP A 701 1 23 HELIX 23 AC5 LEU A 707 ASN A 710 5 4 HELIX 24 AC6 SER A 711 GLY A 722 1 12 HELIX 25 AC7 SER A 727 THR A 731 5 5 HELIX 26 AC8 ASN A 732 HIS A 745 1 14 HELIX 27 AC9 ASP A 748 ALA A 759 1 12 HELIX 28 AD1 ALA A 759 ASN A 775 1 17 SHEET 1 AA1 5 LEU A 437 MET A 441 0 SHEET 2 AA1 5 LEU A 499 GLN A 504 -1 O ILE A 503 N LEU A 437 SHEET 3 AA1 5 LYS A 540 VAL A 550 1 O ILE A 543 N LYS A 500 SHEET 4 AA1 5 ILE A 525 GLN A 537 -1 N GLN A 533 O ARG A 544 SHEET 5 AA1 5 TYR A 477 SER A 480 -1 N SER A 480 O ILE A 525 SHEET 1 AA2 3 ILE A 485 ASP A 487 0 SHEET 2 AA2 3 LYS A 518 LEU A 521 -1 O LEU A 519 N VAL A 486 SHEET 3 AA2 3 ALA A 511 LEU A 514 -1 N LEU A 514 O LYS A 518 SHEET 1 AA3 4 ILE A 583 ASN A 586 0 SHEET 2 AA3 4 PHE A 629 THR A 632 1 O PHE A 629 N THR A 584 SHEET 3 AA3 4 SER A 665 HIS A 669 1 O ILE A 666 N VAL A 630 SHEET 4 AA3 4 GLY A 657 VAL A 660 -1 N LEU A 658 O LEU A 667 LINK NE2 HIS A 686 ZN ZN A 801 1555 1555 2.08 LINK NE2 HIS A 690 ZN ZN A 801 1555 1555 2.07 LINK OE1 GLU A 735 ZN ZN A 801 1555 1555 2.02 LINK ZN ZN A 801 OAE GM6 A 802 1555 1555 2.10 LINK ZN ZN A 801 OAG GM6 A 802 1555 1555 2.07 SITE 1 AC1 4 HIS A 686 HIS A 690 GLU A 735 GM6 A 802 SITE 1 AC2 18 ASP A 328 PHE A 329 VAL A 653 HIS A 654 SITE 2 AC2 18 SER A 655 LYS A 656 GLY A 657 LYS A 673 SITE 3 AC2 18 GLY A 674 VAL A 675 LEU A 677 HIS A 686 SITE 4 AC2 18 GLU A 687 HIS A 690 TYR A 728 GLU A 735 SITE 5 AC2 18 ZN A 801 GOL A 804 SITE 1 AC3 7 PHE A 718 LYS A 719 SER A 723 ARG A 730 SITE 2 AC3 7 HOH A 943 HOH A 973 HOH A 974 SITE 1 AC4 6 LEU A 658 TYR A 659 HIS A 690 GLU A 735 SITE 2 AC4 6 GM6 A 802 HOH A1247 SITE 1 AC5 4 LYS A 295 GLN A 411 ASP A 495 HOH A 920 SITE 1 AC6 5 PRO A 661 ARG A 664 SER A 705 HOH A1232 SITE 2 AC6 5 HOH A1272 CRYST1 51.427 82.420 130.550 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019445 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007660 0.00000