HEADER PROTEIN BINDING 18-MAY-14 4PLO TITLE CRYSTAL STRUCTURE OF CHICKEN NETRIN-1 (LN-LE3) IN COMPLEX WITH MOUSE TITLE 2 DCC (FN4-5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NETRIN RECEPTOR DCC; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: FN4-4 (UNP RESIDUES 721-922); COMPND 5 SYNONYM: TUMOR SUPPRESSOR PROTEIN DCC; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NETRIN-1; COMPND 8 CHAIN: A; COMPND 9 FRAGMENT: LN-LE3 (UNP RESIDUES 26-457); COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 7 ORGANISM_COMMON: CHICKEN; SOURCE 8 ORGANISM_TAXID: 9031; SOURCE 9 GENE: NTN1; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ELONGATED, COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,D.B.NIKOLOV REVDAT 7 20-NOV-24 4PLO 1 REMARK REVDAT 6 27-DEC-23 4PLO 1 HETSYN REVDAT 5 29-JUL-20 4PLO 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 04-DEC-19 4PLO 1 REMARK REVDAT 3 27-SEP-17 4PLO 1 COMPND SOURCE JRNL REMARK REVDAT 2 25-JUN-14 4PLO 1 JRNL REVDAT 1 18-JUN-14 4PLO 0 JRNL AUTH K.XU,Z.WU,N.RENIER,A.ANTIPENKO,D.TZVETKOVA-ROBEV,Y.XU, JRNL AUTH 2 M.MINCHENKO,V.NARDI-DEI,K.R.RAJASHANKAR,J.HIMANEN, JRNL AUTH 3 M.TESSIER-LAVIGNE,D.B.NIKOLOV JRNL TITL NEURAL MIGRATION. STRUCTURES OF NETRIN-1 BOUND TO TWO JRNL TITL 2 RECEPTORS PROVIDE INSIGHT INTO ITS AXON GUIDANCE MECHANISM. JRNL REF SCIENCE V. 344 1275 2014 JRNL REFN ESSN 1095-9203 JRNL PMID 24876346 JRNL DOI 10.1126/SCIENCE.1255149 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 22776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7565 - 6.9863 0.97 1651 159 0.2327 0.2770 REMARK 3 2 6.9863 - 5.5478 0.98 1555 150 0.2327 0.2788 REMARK 3 3 5.5478 - 4.8472 0.99 1571 151 0.2034 0.2625 REMARK 3 4 4.8472 - 4.4044 0.98 1532 147 0.1686 0.2182 REMARK 3 5 4.4044 - 4.0888 0.99 1535 147 0.1866 0.2601 REMARK 3 6 4.0888 - 3.8479 1.00 1528 147 0.2048 0.2908 REMARK 3 7 3.8479 - 3.6552 0.99 1549 148 0.2157 0.2953 REMARK 3 8 3.6552 - 3.4962 0.99 1510 145 0.2125 0.2762 REMARK 3 9 3.4962 - 3.3616 0.94 1448 139 0.2291 0.3229 REMARK 3 10 3.3616 - 3.2456 0.95 1447 139 0.2478 0.3606 REMARK 3 11 3.2456 - 3.1442 0.94 1419 136 0.2864 0.3421 REMARK 3 12 3.1442 - 3.0543 0.93 1422 138 0.3048 0.3662 REMARK 3 13 3.0543 - 2.9739 0.90 1387 132 0.3284 0.4677 REMARK 3 14 2.9739 - 2.9010 0.82 1227 117 0.3727 0.3857 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4926 REMARK 3 ANGLE : 1.414 6665 REMARK 3 CHIRALITY : 0.112 722 REMARK 3 PLANARITY : 0.008 862 REMARK 3 DIHEDRAL : 17.340 1804 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22875 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.88200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M AMMONIUM SULFATE, 0.05 M BIS REMARK 280 -TRIS PH 6.5, 30% V/V PENTAERYTHRITOL ETHOXYLATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.73900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 142.57950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.46950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 142.57950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.73900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.46950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 49.47800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -72.93900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 850 REMARK 465 LYS B 851 REMARK 465 ASN B 852 REMARK 465 GLN B 853 REMARK 465 LYS B 854 REMARK 465 THR B 855 REMARK 465 SER B 856 REMARK 465 ASP B 857 REMARK 465 VAL B 858 REMARK 465 PHE B 869 REMARK 465 SER B 870 REMARK 465 ALA B 871 REMARK 465 SER B 923 REMARK 465 GLY B 924 REMARK 465 GLY A 26 REMARK 465 TYR A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 LEU A 30 REMARK 465 ASN A 31 REMARK 465 MET A 32 REMARK 465 PHE A 33 REMARK 465 ALA A 34 REMARK 465 VAL A 35 REMARK 465 GLN A 36 REMARK 465 THR A 37 REMARK 465 ALA A 38 REMARK 465 GLN A 39 REMARK 465 GLY A 260 REMARK 465 ASP A 261 REMARK 465 GLU A 262 REMARK 465 ASN A 263 REMARK 465 GLU A 264 REMARK 465 PRO A 457 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 108 OG REMARK 470 ASP A 265 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 159 OG1 THR A 181 2.06 REMARK 500 OG SER A 362 O SER A 366 2.12 REMARK 500 O ASP A 207 OG1 THR A 210 2.15 REMARK 500 ND2 ASN A 346 O HOH A 641 2.16 REMARK 500 O LEU A 347 O HOH A 616 2.16 REMARK 500 CB CYS A 406 SG CYS A 418 2.19 REMARK 500 O HOH A 606 O HOH A 628 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 109 C PHE A 109 O -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 75 C - N - CA ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO A 116 C - N - CD ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 767 43.32 -92.58 REMARK 500 LYS A 74 -73.95 -54.65 REMARK 500 ASP A 112 -179.74 -67.06 REMARK 500 PRO A 131 49.32 -87.08 REMARK 500 SER A 254 -60.84 -103.72 REMARK 500 LYS A 309 77.53 -118.74 REMARK 500 LEU A 347 -3.55 67.99 REMARK 500 LYS A 365 -76.19 -108.98 REMARK 500 LEU A 371 -77.67 -91.28 REMARK 500 LEU A 393 -14.46 69.85 REMARK 500 THR A 421 -60.02 -104.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 63 LYS A 64 -147.51 REMARK 500 LYS A 74 PRO A 75 143.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 509 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 109 O REMARK 620 2 ASP A 112 OD1 94.0 REMARK 620 3 THR A 120 O 81.5 145.4 REMARK 620 4 THR A 120 OG1 95.0 74.3 72.0 REMARK 620 5 SER A 279 O 76.6 138.2 74.3 146.1 REMARK 620 6 HOH A 607 O 157.7 108.0 78.2 87.5 89.0 REMARK 620 7 HOH A 619 O 96.6 65.3 149.2 138.6 75.3 96.1 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PLM RELATED DB: PDB REMARK 900 RELATED ID: 4PLN RELATED DB: PDB DBREF 4PLO B 721 922 UNP P70211 DCC_MOUSE 721 922 DBREF 4PLO A 26 457 UNP Q90922 NET1_CHICK 26 457 SEQADV 4PLO GLY B 719 UNP P70211 EXPRESSION TAG SEQADV 4PLO ALA B 720 UNP P70211 EXPRESSION TAG SEQADV 4PLO SER B 923 UNP P70211 EXPRESSION TAG SEQADV 4PLO GLY B 924 UNP P70211 EXPRESSION TAG SEQRES 1 B 206 GLY ALA ASP GLU SER GLN VAL PRO ASP GLN PRO SER SER SEQRES 2 B 206 LEU HIS VAL ARG PRO GLN THR ASN CYS ILE ILE MET SER SEQRES 3 B 206 TRP THR PRO PRO LEU ASN PRO ASN ILE VAL VAL ARG GLY SEQRES 4 B 206 TYR ILE ILE GLY TYR GLY VAL GLY SER PRO TYR ALA GLU SEQRES 5 B 206 THR VAL ARG VAL ASP SER LYS GLN ARG TYR TYR SER ILE SEQRES 6 B 206 GLU ARG LEU GLU SER SER SER HIS TYR VAL ILE SER LEU SEQRES 7 B 206 LYS ALA PHE ASN ASN ALA GLY GLU GLY VAL PRO LEU TYR SEQRES 8 B 206 GLU SER ALA THR THR ARG SER ILE THR ASP VAL SER THR SEQRES 9 B 206 PRO MET LEU PRO PRO VAL GLY VAL GLN ALA VAL ALA LEU SEQRES 10 B 206 THR HIS GLU ALA VAL ARG VAL SER TRP ALA ASP ASN SER SEQRES 11 B 206 VAL PRO LYS ASN GLN LYS THR SER ASP VAL ARG LEU TYR SEQRES 12 B 206 THR VAL ARG TRP ARG THR SER PHE SER ALA SER ALA LYS SEQRES 13 B 206 TYR LYS SER GLU ASP THR THR SER LEU SER TYR THR ALA SEQRES 14 B 206 THR GLY LEU LYS PRO ASN THR MET TYR GLU PHE SER VAL SEQRES 15 B 206 MET VAL THR LYS ASN ARG ARG SER SER THR TRP SER MET SEQRES 16 B 206 THR ALA HIS ALA THR THR TYR GLU ALA SER GLY SEQRES 1 A 432 GLY TYR PRO GLY LEU ASN MET PHE ALA VAL GLN THR ALA SEQRES 2 A 432 GLN PRO ASP PRO CYS TYR ASP GLU HIS GLY LEU PRO ARG SEQRES 3 A 432 ARG CYS ILE PRO ASP PHE VAL ASN SER ALA PHE GLY LYS SEQRES 4 A 432 GLU VAL LYS VAL SER SER THR CYS GLY LYS PRO PRO SER SEQRES 5 A 432 ARG TYR CYS VAL VAL THR GLU LYS GLY GLU GLU GLN VAL SEQRES 6 A 432 ARG SER CYS HIS LEU CYS ASN ALA SER ASP PRO LYS ARG SEQRES 7 A 432 ALA HIS PRO PRO SER PHE LEU THR ASP LEU ASN ASN PRO SEQRES 8 A 432 HIS ASN LEU THR CYS TRP GLN SER ASP SER TYR VAL GLN SEQRES 9 A 432 TYR PRO HIS ASN VAL THR LEU THR LEU SER LEU GLY LYS SEQRES 10 A 432 LYS PHE GLU VAL THR TYR VAL SER LEU GLN PHE CYS SER SEQRES 11 A 432 PRO ARG PRO GLU SER MET ALA ILE TYR LYS SER MET ASP SEQRES 12 A 432 TYR GLY LYS THR TRP VAL PRO PHE GLN PHE TYR SER THR SEQRES 13 A 432 GLN CYS ARG LYS MET TYR ASN LYS PRO SER ARG ALA ALA SEQRES 14 A 432 ILE THR LYS GLN ASN GLU GLN GLU ALA ILE CYS THR ASP SEQRES 15 A 432 SER HIS THR ASP VAL ARG PRO LEU SER GLY GLY LEU ILE SEQRES 16 A 432 ALA PHE SER THR LEU ASP GLY ARG PRO THR ALA HIS ASP SEQRES 17 A 432 PHE ASP ASN SER PRO VAL LEU GLN ASP TRP VAL THR ALA SEQRES 18 A 432 THR ASP ILE LYS VAL THR PHE SER ARG LEU HIS THR PHE SEQRES 19 A 432 GLY ASP GLU ASN GLU ASP ASP SER GLU LEU ALA ARG ASP SEQRES 20 A 432 SER TYR PHE TYR ALA VAL SER ASP LEU GLN VAL GLY GLY SEQRES 21 A 432 ARG CYS LYS CYS ASN GLY HIS ALA SER ARG CYS VAL ARG SEQRES 22 A 432 ASP ARG ASP ASP ASN LEU VAL CYS ASP CYS LYS HIS ASN SEQRES 23 A 432 THR ALA GLY PRO GLU CYS ASP ARG CYS LYS PRO PHE HIS SEQRES 24 A 432 TYR ASP ARG PRO TRP GLN ARG ALA THR ALA ARG GLU ALA SEQRES 25 A 432 ASN GLU CYS VAL ALA CYS ASN CYS ASN LEU HIS ALA ARG SEQRES 26 A 432 ARG CYS ARG PHE ASN MET GLU LEU TYR LYS LEU SER GLY SEQRES 27 A 432 ARG LYS SER GLY GLY VAL CYS LEU ASN CYS ARG HIS ASN SEQRES 28 A 432 THR ALA GLY ARG HIS CYS HIS TYR CYS LYS GLU GLY PHE SEQRES 29 A 432 TYR ARG ASP LEU SER LYS PRO ILE SER HIS ARG LYS ALA SEQRES 30 A 432 CYS LYS GLU CYS ASP CYS HIS PRO VAL GLY ALA ALA GLY SEQRES 31 A 432 GLN THR CYS ASN GLN THR THR GLY GLN CYS PRO CYS LYS SEQRES 32 A 432 ASP GLY VAL THR GLY ILE THR CYS ASN ARG CYS ALA LYS SEQRES 33 A 432 GLY TYR GLN GLN SER ARG SER PRO ILE ALA PRO CYS ILE SEQRES 34 A 432 LYS ILE PRO HET NAG A 501 14 HET NAG A 502 14 HET NAG A 503 14 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET CA A 509 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 6 SO4 5(O4 S 2-) FORMUL 11 CA CA 2+ FORMUL 12 HOH *72(H2 O) HELIX 1 AA1 ILE B 817 THR B 822 1 6 HELIX 2 AA2 PRO A 107 ASP A 112 1 6 HELIX 3 AA3 GLN A 182 TYR A 187 1 6 HELIX 4 AA4 ASP A 233 ASN A 236 5 4 HELIX 5 AA5 SER A 237 VAL A 244 1 8 HELIX 6 AA6 SER A 267 SER A 273 1 7 HELIX 7 AA7 ASN A 355 SER A 362 1 8 SHEET 1 AA1 3 LEU B 732 PRO B 736 0 SHEET 2 AA1 3 ILE B 741 TRP B 745 -1 O ILE B 742 N ARG B 735 SHEET 3 AA1 3 TYR B 780 ILE B 783 -1 O TYR B 781 N MET B 743 SHEET 1 AA2 4 GLU B 770 ARG B 773 0 SHEET 2 AA2 4 GLY B 757 VAL B 764 -1 N TYR B 762 O GLU B 770 SHEET 3 AA2 4 HIS B 791 ASN B 800 -1 O VAL B 793 N GLY B 763 SHEET 4 AA2 4 GLY B 803 GLU B 804 -1 O GLY B 803 N ASN B 800 SHEET 1 AA3 4 GLU B 770 ARG B 773 0 SHEET 2 AA3 4 GLY B 757 VAL B 764 -1 N TYR B 762 O GLU B 770 SHEET 3 AA3 4 HIS B 791 ASN B 800 -1 O VAL B 793 N GLY B 763 SHEET 4 AA3 4 LEU B 808 THR B 813 -1 O GLU B 810 N ILE B 794 SHEET 1 AA4 3 VAL B 828 ALA B 834 0 SHEET 2 AA4 3 ALA B 839 ALA B 845 -1 O ARG B 841 N VAL B 833 SHEET 3 AA4 3 SER B 884 THR B 888 -1 O ALA B 887 N VAL B 840 SHEET 1 AA5 4 LYS B 876 THR B 880 0 SHEET 2 AA5 4 LEU B 860 THR B 867 -1 N TYR B 861 O THR B 880 SHEET 3 AA5 4 MET B 895 LYS B 904 -1 O SER B 899 N ARG B 864 SHEET 4 AA5 4 ARG B 907 SER B 908 -1 O ARG B 907 N LYS B 904 SHEET 1 AA6 4 LYS B 876 THR B 880 0 SHEET 2 AA6 4 LEU B 860 THR B 867 -1 N TYR B 861 O THR B 880 SHEET 3 AA6 4 MET B 895 LYS B 904 -1 O SER B 899 N ARG B 864 SHEET 4 AA6 4 ALA B 915 THR B 918 -1 O ALA B 917 N TYR B 896 SHEET 1 AA7 3 VAL A 58 ASN A 59 0 SHEET 2 AA7 3 ALA A 277 CYS A 287 -1 O GLY A 285 N VAL A 58 SHEET 3 AA7 3 TRP A 122 GLN A 123 -1 N TRP A 122 O VAL A 278 SHEET 1 AA8 3 ALA A 277 CYS A 287 0 SHEET 2 AA8 3 VAL A 134 PHE A 153 -1 N GLN A 152 O SER A 279 SHEET 3 AA8 3 LYS A 67 VAL A 68 -1 N LYS A 67 O THR A 137 SHEET 1 AA9 6 GLY A 218 SER A 223 0 SHEET 2 AA9 6 VAL A 134 PHE A 153 -1 N PHE A 153 O GLY A 218 SHEET 3 AA9 6 THR A 245 ARG A 255 -1 O VAL A 251 N LEU A 136 SHEET 4 AA9 6 SER A 160 SER A 166 -1 N SER A 160 O SER A 254 SHEET 5 AA9 6 TRP A 173 TYR A 179 -1 O PHE A 176 N ILE A 163 SHEET 6 AA9 6 ILE A 204 THR A 206 1 O ILE A 204 N PHE A 178 SHEET 1 AB1 2 SER A 77 LYS A 85 0 SHEET 2 AB1 2 GLU A 88 CYS A 96 -1 O VAL A 90 N THR A 83 SHEET 1 AB2 2 CYS A 296 ARG A 298 0 SHEET 2 AB2 2 LEU A 304 CYS A 306 -1 O VAL A 305 N VAL A 297 SHEET 1 AB3 2 THR A 312 ALA A 313 0 SHEET 2 AB3 2 ARG A 319 CYS A 320 -1 O ARG A 319 N ALA A 313 SHEET 1 AB4 2 CYS A 352 PHE A 354 0 SHEET 2 AB4 2 GLY A 368 CYS A 370 -1 O VAL A 369 N ARG A 353 SHEET 1 AB5 2 THR A 377 ALA A 378 0 SHEET 2 AB5 2 TYR A 384 CYS A 385 -1 O TYR A 384 N ALA A 378 SHEET 1 AB6 2 PHE A 389 ARG A 391 0 SHEET 2 AB6 2 CYS A 403 GLU A 405 -1 O LYS A 404 N TYR A 390 SHEET 1 AB7 2 VAL A 431 THR A 432 0 SHEET 2 AB7 2 ARG A 438 CYS A 439 -1 O ARG A 438 N THR A 432 SHEET 1 AB8 2 TYR A 443 GLN A 445 0 SHEET 2 AB8 2 CYS A 453 LYS A 455 -1 O ILE A 454 N GLN A 444 SSBOND 1 CYS A 43 CYS A 53 1555 1555 1.98 SSBOND 2 CYS A 72 CYS A 96 1555 1555 2.04 SSBOND 3 CYS A 80 CYS A 93 1555 1555 2.06 SSBOND 4 CYS A 121 CYS A 154 1555 1555 2.05 SSBOND 5 CYS A 183 CYS A 205 1555 1555 2.05 SSBOND 6 CYS A 287 CYS A 296 1555 1555 2.07 SSBOND 7 CYS A 289 CYS A 306 1555 1555 2.03 SSBOND 8 CYS A 308 CYS A 317 1555 1555 2.06 SSBOND 9 CYS A 320 CYS A 340 1555 1555 2.05 SSBOND 10 CYS A 343 CYS A 352 1555 1555 2.04 SSBOND 11 CYS A 345 CYS A 370 1555 1555 2.03 SSBOND 12 CYS A 373 CYS A 382 1555 1555 2.04 SSBOND 13 CYS A 385 CYS A 403 1555 1555 2.05 SSBOND 14 CYS A 406 CYS A 418 1555 1555 2.03 SSBOND 15 CYS A 408 CYS A 425 1555 1555 2.03 SSBOND 16 CYS A 427 CYS A 436 1555 1555 2.04 SSBOND 17 CYS A 439 CYS A 453 1555 1555 2.04 LINK ND2 ASN A 97 C1 NAG A 501 1555 1555 1.45 LINK ND2 ASN A 118 C1 NAG A 502 1555 1555 1.48 LINK ND2 ASN A 133 C1 NAG A 503 1555 1555 1.45 LINK O PHE A 109 CA CA A 509 1555 1555 2.81 LINK OD1 ASP A 112 CA CA A 509 1555 1555 2.44 LINK O THR A 120 CA CA A 509 1555 1555 2.83 LINK OG1 THR A 120 CA CA A 509 1555 1555 2.86 LINK O SER A 279 CA CA A 509 1555 1555 2.39 LINK CA CA A 509 O HOH A 607 1555 1555 2.50 LINK CA CA A 509 O HOH A 619 1555 1555 2.38 CISPEP 1 TYR A 130 PRO A 131 0 -2.18 CISPEP 2 ARG A 213 PRO A 214 0 7.44 CISPEP 3 SER A 366 GLY A 367 0 -0.05 CISPEP 4 GLY A 379 ARG A 380 0 15.50 CRYST1 49.478 72.939 285.159 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020211 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003507 0.00000