HEADER OXIDOREDUCTASE 20-MAY-14 4PLZ TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM LACTATE DEHYDROGENASE TITLE 2 MUTANT W107FA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LACTATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 GENE: LDH-P, LDH, LDH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 (PLYSS); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ANCESTRAL SEQUENCE RECONSTRUCTION, DEHYDROGENASE, APICOMPLEXA, KEYWDS 2 SPECIFICITY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.I.BOUCHER,J.R.JACOBOWITZ,B.C.BECKETT,S.CLASSEN,D.L.THEOBALD REVDAT 7 27-SEP-23 4PLZ 1 REMARK REVDAT 6 25-DEC-19 4PLZ 1 REMARK REVDAT 5 27-SEP-17 4PLZ 1 SOURCE REMARK HET HETNAM REVDAT 5 2 1 FORMUL REVDAT 4 01-OCT-14 4PLZ 1 JRNL REVDAT 3 24-SEP-14 4PLZ 1 AUTHOR REVDAT 2 16-JUL-14 4PLZ 1 JRNL REVDAT 1 02-JUL-14 4PLZ 0 JRNL AUTH J.I.BOUCHER,J.R.JACOBOWITZ,B.C.BECKETT,S.CLASSEN, JRNL AUTH 2 D.L.THEOBALD JRNL TITL AN ATOMIC-RESOLUTION VIEW OF NEOFUNCTIONALIZATION IN THE JRNL TITL 2 EVOLUTION OF APICOMPLEXAN LACTATE DEHYDROGENASES. JRNL REF ELIFE V. 3 02304 2014 JRNL REFN ESSN 2050-084X JRNL PMID 24966208 JRNL DOI 10.7554/ELIFE.02304 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 284494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.370 REMARK 3 FREE R VALUE TEST SET COUNT : 3886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7634 - 3.1882 1.00 10112 139 0.1411 0.1566 REMARK 3 2 3.1882 - 2.5306 1.00 10077 139 0.1443 0.1441 REMARK 3 3 2.5306 - 2.2107 1.00 10094 130 0.1350 0.1550 REMARK 3 4 2.2107 - 2.0086 1.00 10046 141 0.1221 0.1214 REMARK 3 5 2.0086 - 1.8646 1.00 10029 146 0.1185 0.1343 REMARK 3 6 1.8646 - 1.7547 1.00 10143 133 0.1187 0.1526 REMARK 3 7 1.7547 - 1.6668 1.00 10105 147 0.1135 0.1341 REMARK 3 8 1.6668 - 1.5942 1.00 10054 142 0.1057 0.1150 REMARK 3 9 1.5942 - 1.5329 1.00 10078 136 0.0996 0.1312 REMARK 3 10 1.5329 - 1.4800 1.00 10074 129 0.0994 0.1215 REMARK 3 11 1.4800 - 1.4337 1.00 9983 151 0.0991 0.1128 REMARK 3 12 1.4337 - 1.3927 1.00 10183 133 0.1042 0.1220 REMARK 3 13 1.3927 - 1.3560 1.00 9994 144 0.1052 0.1300 REMARK 3 14 1.3560 - 1.3229 1.00 10078 130 0.1074 0.1199 REMARK 3 15 1.3229 - 1.2929 1.00 10110 151 0.1095 0.1297 REMARK 3 16 1.2929 - 1.2654 0.99 10001 127 0.1135 0.1609 REMARK 3 17 1.2654 - 1.2400 0.99 9987 143 0.1204 0.1433 REMARK 3 18 1.2400 - 1.2166 0.99 10013 143 0.1239 0.1335 REMARK 3 19 1.2166 - 1.1949 0.99 10004 142 0.1303 0.1789 REMARK 3 20 1.1949 - 1.1747 0.99 10079 136 0.1356 0.1484 REMARK 3 21 1.1747 - 1.1557 0.99 10020 126 0.1377 0.1462 REMARK 3 22 1.1557 - 1.1379 0.99 9980 166 0.1425 0.1461 REMARK 3 23 1.1379 - 1.1212 0.99 9975 130 0.1558 0.2154 REMARK 3 24 1.1212 - 1.1054 0.99 10001 129 0.1687 0.1715 REMARK 3 25 1.1054 - 1.0905 0.99 9963 137 0.1883 0.1746 REMARK 3 26 1.0905 - 1.0763 0.98 9942 145 0.2068 0.2519 REMARK 3 27 1.0763 - 1.0628 0.98 9851 132 0.2244 0.2400 REMARK 3 28 1.0628 - 1.0500 0.96 9632 139 0.2357 0.2697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.060 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2489 REMARK 3 ANGLE : 1.588 3420 REMARK 3 CHIRALITY : 0.075 415 REMARK 3 PLANARITY : 0.009 437 REMARK 3 DIHEDRAL : 15.862 944 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115866 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 284505 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1T2D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MG/ML PROTEIN WITH 1.2MM OXAMATE/2MM REMARK 280 NADH; 22% PEG-1000, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.26500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.00500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.72000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.26500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.00500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.72000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.26500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.00500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.72000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.26500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.00500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.53000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 86.01000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 80.53000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 86.01000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 591 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 708 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 709 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 THR A 82 REMARK 465 LYS A 83 REMARK 465 ALA A 84 REMARK 465 PRO A 85 REMARK 465 GLY A 86 REMARK 465 LYS A 87 REMARK 465 SER A 88 REMARK 465 ASP A 89 REMARK 465 LYS A 90 REMARK 465 GLU A 91 REMARK 465 ALA A 92 REMARK 465 ASN A 93 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 37 CD CE NZ REMARK 470 PHE A 81 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 94 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 96 CG OD1 OD2 REMARK 470 LYS A 103 CD CE NZ REMARK 470 LYS A 114 CD CE NZ REMARK 470 LYS A 184 CE NZ REMARK 470 LYS A 206 CE NZ REMARK 470 GLU A 214 CD OE1 OE2 REMARK 470 LYS A 298 CD CE NZ REMARK 470 LYS A 300 NZ REMARK 470 HIS A 316 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 594 O HOH A 610 1.96 REMARK 500 O HOH A 885 O HOH A 1042 2.04 REMARK 500 O HOH A 507 O HOH A 626 2.08 REMARK 500 O HOH A 860 O HOH A 1043 2.08 REMARK 500 O HOH A 557 O HOH A 647 2.11 REMARK 500 O HOH A 894 O HOH A 991 2.12 REMARK 500 O HOH A 711 O HOH A 712 2.13 REMARK 500 O HOH A 996 O HOH A 1000 2.13 REMARK 500 O HOH A 963 O HOH A 973 2.14 REMARK 500 O HOH A 888 O HOH A 911 2.15 REMARK 500 O HOH A 620 O HOH A 982 2.15 REMARK 500 O HOH A 1039 O HOH A 1041 2.16 REMARK 500 O HOH A 724 O HOH A 1000 2.17 REMARK 500 O HOH A 823 O HOH A 824 2.17 REMARK 500 OD2 ASP A 218 O HOH A 882 2.18 REMARK 500 OD1 ASN A 38 O HOH A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 647 O HOH A 683 3655 1.92 REMARK 500 O HOH A 505 O HOH A 621 6554 1.96 REMARK 500 O HOH A 683 O HOH A 689 3655 2.04 REMARK 500 O HOH A 697 O HOH A 697 4565 2.05 REMARK 500 O HOH A 513 O HOH A 569 3655 2.06 REMARK 500 O HOH A 512 O HOH A 594 8555 2.10 REMARK 500 O HOH A 683 O HOH A 683 3655 2.16 REMARK 500 O HOH A 588 O HOH A 627 8455 2.18 REMARK 500 O HOH A 582 O HOH A 662 2665 2.19 REMARK 500 O HOH A 575 O HOH A 599 4565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 38 -24.49 57.69 REMARK 500 CYS A 116 58.96 -148.92 REMARK 500 TYR A 235 -27.36 -144.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 863 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 899 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 951 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH A1021 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1031 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1033 DISTANCE = 7.89 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAI A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PLC RELATED DB: PDB REMARK 900 RELATED ID: 4PLF RELATED DB: PDB REMARK 900 RELATED ID: 4PLG RELATED DB: PDB REMARK 900 RELATED ID: 4PLH RELATED DB: PDB REMARK 900 RELATED ID: 4PLT RELATED DB: PDB REMARK 900 RELATED ID: 4PLV RELATED DB: PDB REMARK 900 RELATED ID: 4PLW RELATED DB: PDB REMARK 900 RELATED ID: 4PLY RELATED DB: PDB DBREF 4PLZ A 0 315 UNP Q71T02 Q71T02_PLAFA 1 316 SEQADV 4PLZ ALA A 92 UNP Q71T02 TRP 93 ENGINEERED MUTATION SEQADV 4PLZ HIS A 316 UNP Q71T02 EXPRESSION TAG SEQADV 4PLZ HIS A 317 UNP Q71T02 EXPRESSION TAG SEQADV 4PLZ HIS A 318 UNP Q71T02 EXPRESSION TAG SEQADV 4PLZ HIS A 319 UNP Q71T02 EXPRESSION TAG SEQADV 4PLZ HIS A 320 UNP Q71T02 EXPRESSION TAG SEQADV 4PLZ HIS A 321 UNP Q71T02 EXPRESSION TAG SEQRES 1 A 322 MET ALA PRO LYS ALA LYS ILE VAL LEU VAL GLY SER GLY SEQRES 2 A 322 MET ILE GLY GLY VAL MET ALA THR LEU ILE VAL GLN LYS SEQRES 3 A 322 ASN LEU GLY ASP VAL VAL LEU PHE ASP ILE VAL LYS ASN SEQRES 4 A 322 MET PRO HIS GLY LYS ALA LEU ASP THR SER HIS THR ASN SEQRES 5 A 322 VAL MET ALA TYR SER ASN CYS LYS VAL SER GLY SER ASN SEQRES 6 A 322 THR TYR ASP ASP LEU ALA GLY ALA ASP VAL VAL ILE VAL SEQRES 7 A 322 THR ALA GLY PHE THR LYS ALA PRO GLY LYS SER ASP LYS SEQRES 8 A 322 GLU ALA ASN ARG ASP ASP LEU LEU PRO LEU ASN ASN LYS SEQRES 9 A 322 ILE MET ILE GLU ILE GLY GLY HIS ILE LYS LYS ASN CYS SEQRES 10 A 322 PRO ASN ALA PHE ILE ILE VAL VAL THR ASN PRO VAL ASP SEQRES 11 A 322 VAL MET VAL GLN LEU LEU HIS GLN HIS SER GLY VAL PRO SEQRES 12 A 322 LYS ASN LYS ILE ILE GLY LEU GLY GLY VAL LEU ASP THR SEQRES 13 A 322 SER ARG LEU LYS TYR TYR ILE SER GLN LYS LEU ASN VAL SEQRES 14 A 322 CYS PRO ARG ASP VAL ASN ALA HIS ILE VAL GLY ALA HIS SEQRES 15 A 322 GLY ASN LYS MET VAL LEU LEU LYS ARG TYR ILE THR VAL SEQRES 16 A 322 GLY GLY ILE PRO LEU GLN GLU PHE ILE ASN ASN LYS LEU SEQRES 17 A 322 ILE SER ASP ALA GLU LEU GLU ALA ILE PHE ASP ARG THR SEQRES 18 A 322 VAL ASN THR ALA LEU GLU ILE VAL ASN LEU HIS ALA SER SEQRES 19 A 322 PRO TYR VAL ALA PRO ALA ALA ALA ILE ILE GLU MET ALA SEQRES 20 A 322 GLU SER TYR LEU LYS ASP LEU LYS LYS VAL LEU ILE CYS SEQRES 21 A 322 SER THR LEU LEU GLU GLY GLN TYR GLY HIS SER ASP ILE SEQRES 22 A 322 PHE GLY GLY THR PRO VAL VAL LEU GLY ALA ASN GLY VAL SEQRES 23 A 322 GLU GLN VAL ILE GLU LEU GLN LEU ASN SER GLU GLU LYS SEQRES 24 A 322 ALA LYS PHE ASP GLU ALA ILE ALA GLU THR LYS ARG MET SEQRES 25 A 322 LYS ALA LEU ALA HIS HIS HIS HIS HIS HIS HET OXM A 401 6 HET NAI A 402 44 HETNAM OXM OXAMIC ACID HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETSYN NAI NADH FORMUL 2 OXM C2 H3 N O3 FORMUL 3 NAI C21 H29 N7 O14 P2 FORMUL 4 HOH *547(H2 O) HELIX 1 AA1 GLY A 12 LYS A 25 1 14 HELIX 2 AA2 ASN A 38 HIS A 49 1 12 HELIX 3 AA3 HIS A 49 TYR A 55 1 7 HELIX 4 AA4 THR A 65 ALA A 70 5 6 HELIX 5 AA5 ASP A 96 CYS A 116 1 21 HELIX 6 AA6 PRO A 127 GLY A 140 1 14 HELIX 7 AA7 PRO A 142 ASN A 144 5 3 HELIX 8 AA8 GLY A 150 ASN A 167 1 18 HELIX 9 AA9 CYS A 169 ARG A 171 5 3 HELIX 10 AB1 LYS A 189 TYR A 191 5 3 HELIX 11 AB2 LEU A 199 ASN A 205 1 7 HELIX 12 AB3 SER A 209 ASN A 222 1 14 HELIX 13 AB4 ASN A 222 LEU A 230 1 9 HELIX 14 AB5 TYR A 235 LYS A 251 1 17 HELIX 15 AB6 GLN A 266 GLY A 268 5 3 HELIX 16 AB7 ASN A 294 HIS A 316 1 23 SHEET 1 AA1 9 VAL A 60 SER A 63 0 SHEET 2 AA1 9 ASP A 29 PHE A 33 1 N LEU A 32 O SER A 61 SHEET 3 AA1 9 LYS A 5 VAL A 9 1 N LEU A 8 O VAL A 31 SHEET 4 AA1 9 VAL A 74 VAL A 77 1 O VAL A 74 N VAL A 7 SHEET 5 AA1 9 PHE A 120 VAL A 123 1 O ILE A 122 N VAL A 77 SHEET 6 AA1 9 ILE A 146 LEU A 149 1 O ILE A 147 N VAL A 123 SHEET 7 AA1 9 LYS A 255 GLU A 264 -1 O SER A 260 N GLY A 148 SHEET 8 AA1 9 SER A 270 GLY A 281 -1 O ILE A 272 N LEU A 263 SHEET 9 AA1 9 GLY A 284 VAL A 288 -1 O GLU A 286 N VAL A 279 SHEET 1 AA2 3 VAL A 173 ASN A 174 0 SHEET 2 AA2 3 THR A 193 VAL A 194 -1 O THR A 193 N ASN A 174 SHEET 3 AA2 3 ILE A 197 PRO A 198 -1 O ILE A 197 N VAL A 194 SHEET 1 AA3 2 ILE A 177 VAL A 178 0 SHEET 2 AA3 2 VAL A 186 LEU A 187 -1 O VAL A 186 N VAL A 178 CISPEP 1 ASN A 126 PRO A 127 0 -6.28 SITE 1 AC1 8 ASN A 126 LEU A 153 ARG A 157 HIS A 181 SITE 2 AC1 8 PRO A 234 NAI A 402 HOH A 761 HOH A1034 SITE 1 AC2 31 GLY A 10 GLY A 12 MET A 13 ILE A 14 SITE 2 AC2 31 PHE A 33 ASP A 34 ILE A 35 VAL A 36 SITE 3 AC2 31 TYR A 66 THR A 78 ALA A 79 GLY A 80 SITE 4 AC2 31 VAL A 124 THR A 125 ASN A 126 VAL A 128 SITE 5 AC2 31 LEU A 149 LEU A 153 HIS A 181 OXM A 401 SITE 6 AC2 31 HOH A 744 HOH A 749 HOH A 761 HOH A 765 SITE 7 AC2 31 HOH A 776 HOH A 783 HOH A 812 HOH A 844 SITE 8 AC2 31 HOH A 889 HOH A1038 HOH A1045 CRYST1 80.530 86.010 91.440 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012418 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010936 0.00000