HEADER HYDROLASE 27-FEB-14 4PPY TITLE CRYSTAL STRUCTURE OF A PUTATIVE ACYLHYDROLASE (BF3764) FROM TITLE 2 BACTEROIDES FRAGILIS NCTC 9343 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ACYLHYDROLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 27-235; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: ATCC 25285 / NCTC 9343; SOURCE 5 GENE: BF9343_3663; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF13472 FAMILY, GDSL-LIKE LIPASE, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 01-FEB-23 4PPY 1 SEQADV LINK REVDAT 2 22-NOV-17 4PPY 1 REMARK REVDAT 1 02-APR-14 4PPY 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE ACYLHYDROLASE (BF3764) FROM JRNL TITL 2 BACTEROIDES FRAGILIS NCTC 9343 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 50307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2560 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3481 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4867 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 503 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.330 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5091 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4803 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6951 ; 1.118 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11041 ; 0.945 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 658 ; 5.130 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;36.798 ;25.163 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 803 ;11.714 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ; 4.659 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 769 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5963 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1210 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2533 ; 0.727 ; 1.397 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2532 ; 0.723 ; 1.396 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3170 ; 1.237 ; 2.604 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): 55.5793 32.1130 1.5444 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.0089 REMARK 3 T33: 0.0816 T12: 0.0058 REMARK 3 T13: -0.0086 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.4600 L22: 1.6062 REMARK 3 L33: 1.5319 L12: -0.0538 REMARK 3 L13: -0.2276 L23: 0.1979 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: -0.0349 S13: -0.0450 REMARK 3 S21: 0.0264 S22: -0.0020 S23: -0.0795 REMARK 3 S31: 0.0222 S32: 0.1100 S33: -0.0329 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 235 REMARK 3 ORIGIN FOR THE GROUP (A): 31.4142 32.7232 21.4421 REMARK 3 T TENSOR REMARK 3 T11: 0.0997 T22: 0.0850 REMARK 3 T33: 0.0860 T12: -0.0007 REMARK 3 T13: 0.0100 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.7467 L22: 0.6323 REMARK 3 L33: 2.0414 L12: 0.0030 REMARK 3 L13: -0.4825 L23: -0.3234 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: -0.0703 S13: -0.0587 REMARK 3 S21: 0.1174 S22: 0.0243 S23: 0.1032 REMARK 3 S31: 0.1160 S32: -0.0806 S33: 0.0396 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 28 C 235 REMARK 3 ORIGIN FOR THE GROUP (A): 88.9981 12.4509 9.5664 REMARK 3 T TENSOR REMARK 3 T11: 0.0401 T22: 0.0899 REMARK 3 T33: 0.0930 T12: 0.0098 REMARK 3 T13: -0.0073 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.6878 L22: 0.4025 REMARK 3 L33: 2.0029 L12: 0.1776 REMARK 3 L13: -0.3384 L23: -0.1403 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.0731 S13: 0.0850 REMARK 3 S21: 0.0130 S22: 0.0062 S23: 0.0387 REMARK 3 S31: -0.0782 S32: -0.0341 S33: -0.0125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5.RAMACHANDRAN OUTLIER AT RESIDUE 112 IN ALL 3 CHAINS IS REMARK 3 SUPPORTED BY ELECTRON DENSITY. 6.EXPERIMENTAL PHASES IN THE FORM REMARK 3 OF HL COEFFICIENTS WERE USED AS RESTRAINTS DURING REMARK 3 CRYSTALLOGRAPHIC REFINEMENT. REMARK 4 REMARK 4 4PPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979106,0.918401,0.979351 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50307 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.686 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.20300 REMARK 200 R SYM FOR SHELL (I) : 0.20300 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20M MAGNESIUM CHLORIDE, 30.00% REMARK 280 POLYETHYLENE GLYCOL 4000, 0.1M TRIS HYDROCHLORIDE PH 8.5, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 101.36550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.10650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 101.36550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.10650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 202.73100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY B 0 REMARK 465 GLN B 27 REMARK 465 GLY C 0 REMARK 465 GLN C 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 27 CG CD OE1 NE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 ASN A 50 CG OD1 ND2 REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 GLU C 28 CG CD OE1 OE2 REMARK 470 LYS C 46 CE NZ REMARK 470 LYS C 49 CG CD CE NZ REMARK 470 ASN C 50 CG OD1 ND2 REMARK 470 ARG C 235 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 395 O HOH C 395 2656 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 59 -143.93 -107.00 REMARK 500 VAL A 99 -63.87 -120.70 REMARK 500 ALA A 112 -14.48 102.68 REMARK 500 VAL A 212 -51.30 -130.89 REMARK 500 ASP B 30 70.79 -164.52 REMARK 500 ASN B 59 -143.94 -107.44 REMARK 500 VAL B 99 -64.15 -123.00 REMARK 500 ALA B 112 -14.52 102.30 REMARK 500 VAL B 212 -50.92 -131.36 REMARK 500 ASP C 30 72.15 -166.77 REMARK 500 ASN C 59 -145.49 -107.18 REMARK 500 VAL C 99 -63.49 -122.97 REMARK 500 ALA C 112 -14.26 103.19 REMARK 500 VAL C 212 -50.59 -132.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-419039 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 27-235) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4PPY A 27 235 UNP Q5L8Y8 Q5L8Y8_BACFN 27 235 DBREF 4PPY B 27 235 UNP Q5L8Y8 Q5L8Y8_BACFN 27 235 DBREF 4PPY C 27 235 UNP Q5L8Y8 Q5L8Y8_BACFN 27 235 SEQADV 4PPY GLY A 0 UNP Q5L8Y8 EXPRESSION TAG SEQADV 4PPY GLY B 0 UNP Q5L8Y8 EXPRESSION TAG SEQADV 4PPY GLY C 0 UNP Q5L8Y8 EXPRESSION TAG SEQRES 1 A 210 GLY GLN GLU LYS ASP TRP ALA ASN LEU GLN ARG TYR ALA SEQRES 2 A 210 GLN GLN ASN ALA GLU LEU PRO LYS PRO ASP LYS ASN GLU SEQRES 3 A 210 LYS ARG VAL VAL PHE MSE GLY ASN SER ILE THR GLU GLY SEQRES 4 A 210 TRP VAL ASN THR HIS PRO ASP PHE PHE LYS SER ASN GLY SEQRES 5 A 210 TYR ILE GLY ARG GLY ILE GLY GLY GLN THR SER TYR GLN SEQRES 6 A 210 PHE LEU VAL ARG PHE ARG GLU ASP VAL ILE ASN LEU SER SEQRES 7 A 210 PRO ALA LEU VAL VAL ILE ASN ALA ALA THR ASN ASP ILE SEQRES 8 A 210 ALA GLU ASN THR GLY ALA TYR HIS GLU ASP ARG THR PHE SEQRES 9 A 210 GLY ASN ILE VAL SER MSE VAL GLU LEU ALA LYS ALA ASN SEQRES 10 A 210 HIS ILE LYS VAL ILE LEU THR THR THR LEU PRO ALA ALA SEQRES 11 A 210 ALA PHE GLY TRP ASN PRO SER ILE LYS ASP ALA PRO GLN SEQRES 12 A 210 LYS ILE ALA SER LEU ASN ALA ARG LEU LYS ALA TYR ALA SEQRES 13 A 210 GLN THR ASN LYS ILE PRO PHE VAL ASP TYR TYR SER SER SEQRES 14 A 210 MSE VAL SER GLY SER ASN LYS ALA LEU ASN PRO ALA TYR SEQRES 15 A 210 THR LYS ASP GLY VAL HIS PRO THR SER GLU GLY TYR ASP SEQRES 16 A 210 VAL MSE GLU ASN LEU ILE GLN GLN ALA ILE ASN LYS THR SEQRES 17 A 210 LEU ARG SEQRES 1 B 210 GLY GLN GLU LYS ASP TRP ALA ASN LEU GLN ARG TYR ALA SEQRES 2 B 210 GLN GLN ASN ALA GLU LEU PRO LYS PRO ASP LYS ASN GLU SEQRES 3 B 210 LYS ARG VAL VAL PHE MSE GLY ASN SER ILE THR GLU GLY SEQRES 4 B 210 TRP VAL ASN THR HIS PRO ASP PHE PHE LYS SER ASN GLY SEQRES 5 B 210 TYR ILE GLY ARG GLY ILE GLY GLY GLN THR SER TYR GLN SEQRES 6 B 210 PHE LEU VAL ARG PHE ARG GLU ASP VAL ILE ASN LEU SER SEQRES 7 B 210 PRO ALA LEU VAL VAL ILE ASN ALA ALA THR ASN ASP ILE SEQRES 8 B 210 ALA GLU ASN THR GLY ALA TYR HIS GLU ASP ARG THR PHE SEQRES 9 B 210 GLY ASN ILE VAL SER MSE VAL GLU LEU ALA LYS ALA ASN SEQRES 10 B 210 HIS ILE LYS VAL ILE LEU THR THR THR LEU PRO ALA ALA SEQRES 11 B 210 ALA PHE GLY TRP ASN PRO SER ILE LYS ASP ALA PRO GLN SEQRES 12 B 210 LYS ILE ALA SER LEU ASN ALA ARG LEU LYS ALA TYR ALA SEQRES 13 B 210 GLN THR ASN LYS ILE PRO PHE VAL ASP TYR TYR SER SER SEQRES 14 B 210 MSE VAL SER GLY SER ASN LYS ALA LEU ASN PRO ALA TYR SEQRES 15 B 210 THR LYS ASP GLY VAL HIS PRO THR SER GLU GLY TYR ASP SEQRES 16 B 210 VAL MSE GLU ASN LEU ILE GLN GLN ALA ILE ASN LYS THR SEQRES 17 B 210 LEU ARG SEQRES 1 C 210 GLY GLN GLU LYS ASP TRP ALA ASN LEU GLN ARG TYR ALA SEQRES 2 C 210 GLN GLN ASN ALA GLU LEU PRO LYS PRO ASP LYS ASN GLU SEQRES 3 C 210 LYS ARG VAL VAL PHE MSE GLY ASN SER ILE THR GLU GLY SEQRES 4 C 210 TRP VAL ASN THR HIS PRO ASP PHE PHE LYS SER ASN GLY SEQRES 5 C 210 TYR ILE GLY ARG GLY ILE GLY GLY GLN THR SER TYR GLN SEQRES 6 C 210 PHE LEU VAL ARG PHE ARG GLU ASP VAL ILE ASN LEU SER SEQRES 7 C 210 PRO ALA LEU VAL VAL ILE ASN ALA ALA THR ASN ASP ILE SEQRES 8 C 210 ALA GLU ASN THR GLY ALA TYR HIS GLU ASP ARG THR PHE SEQRES 9 C 210 GLY ASN ILE VAL SER MSE VAL GLU LEU ALA LYS ALA ASN SEQRES 10 C 210 HIS ILE LYS VAL ILE LEU THR THR THR LEU PRO ALA ALA SEQRES 11 C 210 ALA PHE GLY TRP ASN PRO SER ILE LYS ASP ALA PRO GLN SEQRES 12 C 210 LYS ILE ALA SER LEU ASN ALA ARG LEU LYS ALA TYR ALA SEQRES 13 C 210 GLN THR ASN LYS ILE PRO PHE VAL ASP TYR TYR SER SER SEQRES 14 C 210 MSE VAL SER GLY SER ASN LYS ALA LEU ASN PRO ALA TYR SEQRES 15 C 210 THR LYS ASP GLY VAL HIS PRO THR SER GLU GLY TYR ASP SEQRES 16 C 210 VAL MSE GLU ASN LEU ILE GLN GLN ALA ILE ASN LYS THR SEQRES 17 C 210 LEU ARG MODRES 4PPY MSE A 57 MET SELENOMETHIONINE MODRES 4PPY MSE A 135 MET SELENOMETHIONINE MODRES 4PPY MSE A 195 MET SELENOMETHIONINE MODRES 4PPY MSE A 222 MET SELENOMETHIONINE MODRES 4PPY MSE B 57 MET SELENOMETHIONINE MODRES 4PPY MSE B 135 MET SELENOMETHIONINE MODRES 4PPY MSE B 195 MET SELENOMETHIONINE MODRES 4PPY MSE B 222 MET SELENOMETHIONINE MODRES 4PPY MSE C 57 MET SELENOMETHIONINE MODRES 4PPY MSE C 135 MET SELENOMETHIONINE MODRES 4PPY MSE C 195 MET SELENOMETHIONINE MODRES 4PPY MSE C 222 MET SELENOMETHIONINE HET MSE A 57 8 HET MSE A 135 8 HET MSE A 195 8 HET MSE A 222 8 HET MSE B 57 8 HET MSE B 135 8 HET MSE B 195 8 HET MSE B 222 8 HET MSE C 57 8 HET MSE C 135 8 HET MSE C 195 8 HET MSE C 222 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 4 HOH *503(H2 O) HELIX 1 1 LEU A 34 LEU A 44 1 11 HELIX 2 2 ASN A 59 HIS A 69 1 11 HELIX 3 3 HIS A 69 GLY A 77 1 9 HELIX 4 4 THR A 87 VAL A 99 1 13 HELIX 5 5 ILE A 100 SER A 103 5 4 HELIX 6 6 ALA A 112 ALA A 117 1 6 HELIX 7 7 HIS A 124 ASN A 142 1 19 HELIX 8 8 ASP A 165 ASN A 184 1 20 HELIX 9 9 ASP A 190 MSE A 195 1 6 HELIX 10 10 PRO A 205 THR A 208 5 4 HELIX 11 11 THR A 215 ARG A 235 1 21 HELIX 12 12 LEU B 34 LEU B 44 1 11 HELIX 13 13 ASP B 48 LYS B 52 5 5 HELIX 14 14 ASN B 59 HIS B 69 1 11 HELIX 15 15 HIS B 69 GLY B 77 1 9 HELIX 16 16 THR B 87 VAL B 99 1 13 HELIX 17 17 ILE B 100 SER B 103 5 4 HELIX 18 18 ALA B 112 ALA B 117 1 6 HELIX 19 19 HIS B 124 ASN B 142 1 19 HELIX 20 20 ASP B 165 ASN B 184 1 20 HELIX 21 21 ASP B 190 MSE B 195 1 6 HELIX 22 22 PRO B 205 THR B 208 5 4 HELIX 23 23 THR B 215 ARG B 235 1 21 HELIX 24 24 LEU C 34 LEU C 44 1 11 HELIX 25 25 ASN C 59 HIS C 69 1 11 HELIX 26 26 HIS C 69 GLY C 77 1 9 HELIX 27 27 THR C 87 VAL C 99 1 13 HELIX 28 28 ILE C 100 SER C 103 5 4 HELIX 29 29 ALA C 112 ALA C 117 1 6 HELIX 30 30 HIS C 124 ASN C 142 1 19 HELIX 31 31 ASP C 165 ASN C 184 1 20 HELIX 32 32 ASP C 190 MSE C 195 1 6 HELIX 33 33 PRO C 205 THR C 208 5 4 HELIX 34 34 THR C 215 ARG C 235 1 21 SHEET 1 A 5 ILE A 79 GLY A 82 0 SHEET 2 A 5 VAL A 54 GLY A 58 1 N VAL A 54 O ILE A 79 SHEET 3 A 5 LEU A 106 ILE A 109 1 O VAL A 108 N MSE A 57 SHEET 4 A 5 LYS A 145 THR A 149 1 O ILE A 147 N ILE A 109 SHEET 5 A 5 PHE A 188 VAL A 189 1 O VAL A 189 N LEU A 148 SHEET 1 B 2 VAL A 196 SER A 197 0 SHEET 2 B 2 ALA A 202 LEU A 203 -1 O ALA A 202 N SER A 197 SHEET 1 C 5 TYR B 78 GLY B 82 0 SHEET 2 C 5 VAL B 54 GLY B 58 1 N PHE B 56 O ILE B 79 SHEET 3 C 5 LEU B 106 ILE B 109 1 O VAL B 108 N MSE B 57 SHEET 4 C 5 LYS B 145 THR B 149 1 O ILE B 147 N ILE B 109 SHEET 5 C 5 PHE B 188 VAL B 189 1 O VAL B 189 N LEU B 148 SHEET 1 D 2 VAL B 196 SER B 197 0 SHEET 2 D 2 ALA B 202 LEU B 203 -1 O ALA B 202 N SER B 197 SHEET 1 E 5 TYR C 78 GLY C 82 0 SHEET 2 E 5 VAL C 54 GLY C 58 1 N VAL C 54 O ILE C 79 SHEET 3 E 5 LEU C 106 ILE C 109 1 O VAL C 108 N MSE C 57 SHEET 4 E 5 LYS C 145 THR C 149 1 O LYS C 145 N VAL C 107 SHEET 5 E 5 PHE C 188 VAL C 189 1 O VAL C 189 N LEU C 148 SHEET 1 F 2 VAL C 196 SER C 197 0 SHEET 2 F 2 ALA C 202 LEU C 203 -1 O ALA C 202 N SER C 197 LINK C PHE A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N GLY A 58 1555 1555 1.33 LINK C SER A 134 N MSE A 135 1555 1555 1.32 LINK C MSE A 135 N VAL A 136 1555 1555 1.33 LINK C SER A 194 N MSE A 195 1555 1555 1.33 LINK C MSE A 195 N VAL A 196 1555 1555 1.33 LINK C VAL A 221 N MSE A 222 1555 1555 1.33 LINK C MSE A 222 N GLU A 223 1555 1555 1.33 LINK C PHE B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N GLY B 58 1555 1555 1.33 LINK C SER B 134 N MSE B 135 1555 1555 1.33 LINK C MSE B 135 N VAL B 136 1555 1555 1.33 LINK C SER B 194 N MSE B 195 1555 1555 1.33 LINK C MSE B 195 N VAL B 196 1555 1555 1.33 LINK C VAL B 221 N MSE B 222 1555 1555 1.33 LINK C MSE B 222 N GLU B 223 1555 1555 1.33 LINK C PHE C 56 N MSE C 57 1555 1555 1.33 LINK C MSE C 57 N GLY C 58 1555 1555 1.33 LINK C SER C 134 N MSE C 135 1555 1555 1.33 LINK C MSE C 135 N VAL C 136 1555 1555 1.34 LINK C SER C 194 N MSE C 195 1555 1555 1.33 LINK C MSE C 195 N VAL C 196 1555 1555 1.33 LINK C VAL C 221 N MSE C 222 1555 1555 1.33 LINK C MSE C 222 N GLU C 223 1555 1555 1.33 CRYST1 202.731 62.213 61.009 90.00 95.90 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004933 0.000000 0.000509 0.00000 SCALE2 0.000000 0.016074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016478 0.00000