HEADER HYDROLASE 13-MAR-14 4PUT TITLE CRYSTAL STRUCTURE OF THE ARABIDOPSIS THALIANA TOP2 OLIGOPEPTIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC OLIGOPEPTIDASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THIMET METALLOENDOPEPTIDASE 2, ZINCIN-LIKE METALLOPROTEASES COMPND 5 FAMILY PROTEIN 2; COMPND 6 EC: 3.4.24.70; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CYOP, TOP2, AT5G10540, F12B17.110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OLIGOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.WANG,K.RAJAGOPALAN,L.TONG REVDAT 3 28-FEB-24 4PUT 1 REMARK SEQADV LINK REVDAT 2 25-JUN-14 4PUT 1 JRNL REVDAT 1 14-MAY-14 4PUT 0 JRNL AUTH R.WANG,K.RAJAGOPALAN,K.SADRE-BAZZAZ,M.MOREAU,D.F.KLESSIG, JRNL AUTH 2 L.TONG JRNL TITL STRUCTURE OF THE ARABIDOPSIS THALIANA TOP2 OLIGOPEPTIDASE. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 70 555 2014 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 1744-3091 JRNL PMID 24817709 JRNL DOI 10.1107/S2053230X14006128 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PRIME-X REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : OPLS 2005X REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)/RMS(F)) : 149597.430 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 28322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1404 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.11 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2380 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.033 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5517 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.28000 REMARK 3 B22 (A**2) : 5.28000 REMARK 3 B33 (A**2) : -10.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 SOLVENT VOLUME (%) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.59 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.61 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.050 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.340 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.850 ; 4.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.880 ; 3.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.030 ; 5.000 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETERS AND TOPOLOGY. REMARK 3 FORCE FIELD : NULL REMARK 3 PLANARITY WEIGHT : NULL REMARK 3 SOLVENT MODEL : NULL REMARK 3 REMARK 3 CLASH COUNT PER 100 RESIDUES. REMARK 3 SEVERE : NULL REMARK 3 OTHER : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 4PUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29598 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.51400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 220 MM AMMONIUM ACETATE AND 20% (W/V) REMARK 280 PEG 3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.79500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 87.79500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.79500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 87.79500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 87.79500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 87.79500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 ASP A 5 REMARK 465 ALA A 698 REMARK 465 ALA A 699 REMARK 465 SER A 700 REMARK 465 ALA A 701 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 222 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 213 CG HIS A 213 CD2 0.056 REMARK 500 HIS A 483 CG HIS A 483 CD2 0.063 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 222 N - CA - CB ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 8 -32.10 -38.12 REMARK 500 LEU A 58 -72.98 -138.65 REMARK 500 SER A 109 104.48 -58.63 REMARK 500 PRO A 222 82.59 67.92 REMARK 500 ASN A 241 99.60 -65.91 REMARK 500 ASP A 336 -6.80 73.26 REMARK 500 SER A 337 18.77 -140.65 REMARK 500 ASN A 461 55.80 -141.82 REMARK 500 PHE A 556 -81.62 -32.61 REMARK 500 ARG A 557 40.65 -105.81 REMARK 500 GLU A 606 -26.07 85.55 REMARK 500 THR A 663 -92.67 -124.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 221 PRO A 222 -141.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 483 NE2 REMARK 620 2 HIS A 487 NE2 95.3 REMARK 620 3 GLU A 513 OE1 136.4 81.8 REMARK 620 4 GLU A 513 OE2 77.4 88.0 59.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 802 DBREF 4PUT A 1 701 UNP Q949P2 COPDA_ARATH 1 701 SEQADV 4PUT MET A -19 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT GLY A -18 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT SER A -17 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT SER A -16 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT HIS A -15 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT HIS A -14 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT HIS A -13 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT HIS A -12 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT HIS A -11 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT HIS A -10 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT SER A -9 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT SER A -8 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT GLY A -7 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT LEU A -6 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT VAL A -5 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT PRO A -4 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT ARG A -3 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT GLY A -2 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT SER A -1 UNP Q949P2 EXPRESSION TAG SEQADV 4PUT HIS A 0 UNP Q949P2 EXPRESSION TAG SEQRES 1 A 721 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 721 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLU ASP THR SEQRES 3 A 721 LEU SER SER ASN PRO LEU LEU GLN ASN PHE ASP PHE PRO SEQRES 4 A 721 PRO PHE ASP SER VAL ASP ALA HIS HIS VAL ARG PRO GLY SEQRES 5 A 721 ILE ARG ALA LEU LEU GLN GLN LEU GLU ALA GLU LEU GLU SEQRES 6 A 721 GLN LEU GLU LYS ALA VAL GLU PRO SER TRP PRO LYS LEU SEQRES 7 A 721 VAL GLU PRO LEU GLU LYS ILE ILE ASP ARG LEU SER VAL SEQRES 8 A 721 VAL TRP GLY MET ILE ASN HIS LEU LYS ALA VAL LYS ASP SEQRES 9 A 721 THR PRO GLU LEU ARG ALA ALA ILE GLU GLU VAL GLN PRO SEQRES 10 A 721 GLU LYS VAL LYS PHE GLN LEU ARG LEU GLY GLN SER LYS SEQRES 11 A 721 PRO ILE TYR ASN ALA PHE LYS ALA ILE ARG GLU SER PRO SEQRES 12 A 721 ASP TRP ASN SER LEU SER GLU ALA ARG GLN ARG LEU VAL SEQRES 13 A 721 GLU ALA GLN ILE LYS GLU ALA VAL LEU SER GLY ILE ALA SEQRES 14 A 721 LEU GLU ASP ASP LYS ARG GLU GLU PHE ASN LYS ILE GLU SEQRES 15 A 721 GLN GLU LEU GLU LYS LEU SER HIS LYS PHE SER GLU ASN SEQRES 16 A 721 VAL LEU ASP ALA THR LYS LYS PHE GLU LYS LEU ILE THR SEQRES 17 A 721 ASP LYS LYS GLU ILE GLU GLY LEU PRO PRO SER ALA LEU SEQRES 18 A 721 GLY LEU PHE ALA GLN ALA ALA VAL SER LYS GLY HIS GLU SEQRES 19 A 721 THR ALA THR ALA ASP THR GLY PRO TRP LEU ILE THR LEU SEQRES 20 A 721 ASP ALA PRO SER TYR LEU PRO VAL MET GLN HIS ALA LYS SEQRES 21 A 721 ASN ARG ALA LEU ARG GLU GLU VAL TYR ARG ALA TYR LEU SEQRES 22 A 721 SER ARG ALA SER SER GLY ASP LEU ASP ASN THR ALA ILE SEQRES 23 A 721 ILE ASP GLN ILE LEU LYS LEU ARG LEU GLU LYS ALA LYS SEQRES 24 A 721 LEU LEU GLY TYR ARG ASN TYR ALA GLU VAL SER MET ALA SEQRES 25 A 721 THR LYS MET ALA THR VAL GLU LYS ALA ASP GLU LEU LEU SEQRES 26 A 721 GLU LYS LEU ARG SER ALA SER TRP ASP PRO ALA VAL GLN SEQRES 27 A 721 ASP ILE GLU ASP LEU LYS SER PHE ALA LYS ASN GLN GLY SEQRES 28 A 721 ALA ALA GLU ALA ASP SER LEU THR HIS TRP ASP ILE THR SEQRES 29 A 721 PHE TRP SER GLU ARG LEU ARG GLU SER LYS TYR ASP ILE SEQRES 30 A 721 ASN GLU GLU GLU LEU ARG PRO TYR PHE SER LEU PRO LYS SEQRES 31 A 721 VAL MET ASP ALA LEU PHE GLY LEU ALA LYS THR LEU PHE SEQRES 32 A 721 GLY ILE ASP VAL VAL PRO ALA ASP GLY VAL ALA PRO VAL SEQRES 33 A 721 TRP ASN SER ASP VAL ARG PHE TYR CYS VAL LYS ASP SER SEQRES 34 A 721 SER GLY ASN PRO THR ALA TYR PHE TYR PHE ASP PRO TYR SEQRES 35 A 721 SER ARG PRO SER GLU LYS ARG ASP GLY ALA TRP MET ASP SEQRES 36 A 721 GLU VAL PHE SER ARG SER ARG VAL MET ALA GLN LYS GLY SEQRES 37 A 721 SER SER VAL ARG LEU PRO VAL ALA GLN MET VAL CYS ASN SEQRES 38 A 721 GLN THR PRO PRO VAL GLY ASP LYS PRO SER LEU MET THR SEQRES 39 A 721 PHE ARG GLU VAL GLU THR VAL PHE HIS GLU PHE GLY HIS SEQRES 40 A 721 ALA LEU GLN HIS MET LEU THR LYS GLU ASP GLU GLY LEU SEQRES 41 A 721 VAL ALA GLY ILE ARG ASN ILE GLU TRP ASP ALA VAL GLU SEQRES 42 A 721 LEU PRO SER GLN PHE MET GLU ASN TRP CYS TYR HIS ARG SEQRES 43 A 721 ASP THR LEU MET SER ILE ALA LYS HIS TYR GLN THR GLY SEQRES 44 A 721 GLU THR LEU PRO GLU ASN VAL TYR LYS LYS LEU LEU ALA SEQRES 45 A 721 ALA ARG THR PHE ARG ALA GLY SER LEU SER LEU ARG GLN SEQRES 46 A 721 LEU LYS PHE ALA THR VAL ASP LEU GLU LEU HIS THR LYS SEQRES 47 A 721 TYR MET PRO GLY GLY ALA GLU THR ILE TYR GLU VAL ASP SEQRES 48 A 721 GLN ARG VAL SER ILE LYS THR GLN VAL ILE PRO PRO LEU SEQRES 49 A 721 PRO GLU ASP ARG PHE LEU CYS SER PHE SER HIS ILE PHE SEQRES 50 A 721 ALA GLY GLY TYR ALA ALA GLY TYR TYR SER TYR LYS TRP SEQRES 51 A 721 ALA GLU VAL LEU SER ALA ASP ALA PHE SER ALA PHE GLU SEQRES 52 A 721 ASP ALA GLY LEU ASP ASP ILE LYS ALA VAL LYS GLU THR SEQRES 53 A 721 GLY GLN ARG PHE ARG ASN THR ILE LEU ALA LEU GLY GLY SEQRES 54 A 721 GLY LYS ALA PRO LEU LYS VAL PHE VAL GLU PHE ARG GLY SEQRES 55 A 721 ARG GLU PRO SER PRO GLU PRO LEU LEU ARG HIS ASN GLY SEQRES 56 A 721 LEU LEU ALA ALA SER ALA HET ZN A 801 1 HET CL A 802 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 2 ZN ZN 2+ FORMUL 3 CL CL 1- HELIX 1 1 THR A 6 GLN A 14 5 9 HELIX 2 2 ASP A 25 VAL A 51 1 27 HELIX 3 3 LEU A 58 LYS A 83 1 26 HELIX 4 4 THR A 85 GLN A 108 1 24 HELIX 5 5 SER A 109 SER A 122 1 14 HELIX 6 6 PRO A 123 LEU A 128 5 6 HELIX 7 7 SER A 129 SER A 146 1 18 HELIX 8 8 GLU A 151 LYS A 182 1 32 HELIX 9 9 ASP A 189 GLU A 194 5 6 HELIX 10 10 PRO A 197 LYS A 211 1 15 HELIX 11 11 ASP A 228 ALA A 239 1 12 HELIX 12 12 ASN A 241 LEU A 253 1 13 HELIX 13 13 ASN A 263 LEU A 281 1 19 HELIX 14 14 ASN A 285 ALA A 292 1 8 HELIX 15 15 THR A 297 GLN A 330 1 34 HELIX 16 16 THR A 339 TYR A 355 1 17 HELIX 17 17 ASN A 358 PHE A 366 5 9 HELIX 18 18 SER A 367 GLY A 384 1 18 HELIX 19 19 THR A 474 LEU A 493 1 20 HELIX 20 20 GLU A 498 ALA A 502 5 5 HELIX 21 21 GLU A 508 GLU A 513 1 6 HELIX 22 22 GLU A 513 ASN A 521 1 9 HELIX 23 23 TRP A 522 TYR A 524 5 3 HELIX 24 24 HIS A 525 ALA A 533 1 9 HELIX 25 25 PRO A 543 PHE A 556 1 14 HELIX 26 26 ARG A 557 LYS A 578 1 22 HELIX 27 27 THR A 586 GLN A 599 1 14 HELIX 28 28 PHE A 609 SER A 612 5 4 HELIX 29 29 PHE A 613 ALA A 618 1 6 HELIX 30 30 TYR A 626 GLY A 646 1 21 HELIX 31 31 ASP A 649 ASN A 662 1 14 HELIX 32 32 ALA A 672 GLY A 682 1 11 HELIX 33 33 PRO A 687 ASN A 694 1 8 SHEET 1 A 2 GLU A 184 ILE A 187 0 SHEET 2 A 2 TRP A 223 THR A 226 -1 O TRP A 223 N ILE A 187 SHEET 1 B 5 ASP A 386 PRO A 389 0 SHEET 2 B 5 ARG A 402 LYS A 407 -1 O CYS A 405 N VAL A 388 SHEET 3 B 5 PRO A 413 TYR A 422 -1 O THR A 414 N VAL A 406 SHEET 4 B 5 VAL A 455 GLN A 462 1 O ALA A 456 N TYR A 418 SHEET 5 B 5 TRP A 433 PHE A 438 -1 N ASP A 435 O GLN A 457 LINK NE2 HIS A 483 ZN ZN A 801 1555 1555 2.31 LINK NE2 HIS A 487 ZN ZN A 801 1555 1555 2.05 LINK OE1 GLU A 513 ZN ZN A 801 1555 1555 2.17 LINK OE2 GLU A 513 ZN ZN A 801 1555 1555 2.28 SITE 1 AC1 4 HIS A 483 HIS A 487 GLU A 513 CL A 802 SITE 1 AC2 3 HIS A 483 GLU A 513 ZN A 801 CRYST1 168.740 168.740 175.590 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005926 0.003422 0.000000 0.00000 SCALE2 0.000000 0.006843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005695 0.00000