HEADER HYDROLASE/HYDROLASE INHIBITOR 18-MAR-14 4PVO TITLE CRYSTAL STRUCTURE OF VIM-2 METALLO-BETA-LACTAMASE IN COMPLEX WITH TITLE 2 ML302 AND ML302F COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE CLASS B VIM-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 27-266; COMPND 5 SYNONYM: CLASS B BETA-LACTAMASE, METALLO BETA-LACTAMASE, METALLO- COMPND 6 BETA-LACTAMASE, METALLO-BETA-LACTAMASE VIM-2, METTALO-BETA-LACTAMASE COMPND 7 VIM-2, VIM-2, VIM-2 CLASS B METALLO B-LACTAMASE, VIM-2 PROTEIN, VIM-2 COMPND 8 TYPE METALLO-BETA-LACTAMASE; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLA-VIM-2, BLASVIM-2, BLAVIM-2, BLAVIM2, VIM-2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPIN-F VIM-2 KEYWDS ALPHA-BETA/BETA-ALPHA FOLD, BETA-LACTAMASE, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.S.AIK,J.BREM,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 3 08-NOV-23 4PVO 1 REMARK SEQADV LINK REVDAT 2 25-FEB-15 4PVO 1 JRNL REVDAT 1 19-NOV-14 4PVO 0 JRNL AUTH J.BREM,S.S.VAN BERKEL,W.AIK,A.M.RYDZIK,M.B.AVISON, JRNL AUTH 2 I.PETTINATI,K.D.UMLAND,A.KAWAMURA,J.SPENCER,T.D.CLARIDGE, JRNL AUTH 3 M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL RHODANINE HYDROLYSIS LEADS TO POTENT THIOENOLATE MEDIATED JRNL TITL 2 METALLO-BETA-LACTAMASE INHIBITION. JRNL REF NAT.CHEM. V. 6 1084 2014 JRNL REFN ISSN 1755-4330 JRNL PMID 25411887 JRNL DOI 10.1038/NCHEM.2110 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4-1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 68092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1310 - 3.5682 1.00 0 141 0.1331 0.1459 REMARK 3 2 1.5179 - 1.4808 0.92 0 135 0.2153 0.2595 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.83440 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68140 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID 1KO3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1MM TCEP, 2.5MM ML302, 50MM HEPES PH REMARK 280 7.5, 100MM NACL, 0.1MM ZNCL2, 0.1M MAGNESIUM FORMATE, 25% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.28500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.61950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.28500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.61950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 PRO A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 SER A 297 REMARK 465 VAL A 298 REMARK 465 VAL A 299 REMARK 465 GLU A 300 REMARK 465 GLY B 23 REMARK 465 PRO B 24 REMARK 465 VAL B 25 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 VAL B 299 REMARK 465 GLU B 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 39 CG1 CG2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 ARG A 75 CZ NH1 NH2 REMARK 470 ASP A 78 CG OD1 OD2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 GLU A 100 CD OE1 OE2 REMARK 470 GLU A 247 CD OE1 OE2 REMARK 470 GLN A 251 CD OE1 NE2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 LYS B 90 CD CE NZ REMARK 470 VAL B 298 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN A 405 O2 FMT A 406 1.45 REMARK 500 O HOH A 540 O HOH A 735 2.00 REMARK 500 O HOH B 738 O HOH B 750 2.06 REMARK 500 O HOH B 609 O HOH B 750 2.08 REMARK 500 O HOH B 740 O HOH B 741 2.13 REMARK 500 O HOH B 751 O HOH B 752 2.13 REMARK 500 O HOH B 732 O HOH B 756 2.14 REMARK 500 O HOH A 722 O HOH A 727 2.15 REMARK 500 OD2 ASP A 76 O HOH A 772 2.16 REMARK 500 O HOH A 650 O HOH A 703 2.17 REMARK 500 O HOH A 712 O HOH A 744 2.17 REMARK 500 O HOH A 748 O HOH A 771 2.18 REMARK 500 O HOH B 596 O HOH B 746 2.19 REMARK 500 O HOH A 655 O HOH A 730 2.19 REMARK 500 O HOH B 581 O HOH B 611 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 129 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 129 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 248 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 150.07 73.62 REMARK 500 TRP A 87 68.74 66.67 REMARK 500 ALA A 195 -104.85 -154.73 REMARK 500 ASP B 84 148.14 73.70 REMARK 500 TRP B 87 68.57 67.34 REMARK 500 ALA B 195 -105.54 -154.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SVB A 404 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 97.9 REMARK 620 3 HIS A 196 NE2 103.4 108.4 REMARK 620 4 S3C A 403 S9 120.9 112.5 112.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 221 SG 101.4 REMARK 620 3 HIS A 263 NE2 87.4 104.7 REMARK 620 4 S3C A 403 O7 162.5 96.0 86.1 REMARK 620 5 S3C A 403 S9 88.1 125.6 129.3 83.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 285 ND1 REMARK 620 2 FMT A 407 O2 109.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 100.2 REMARK 620 3 HIS B 196 NE2 102.5 106.8 REMARK 620 4 S3C B 406 S9 121.5 111.4 112.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD2 REMARK 620 2 CYS B 221 SG 100.8 REMARK 620 3 HIS B 263 NE2 88.8 105.6 REMARK 620 4 S3C B 406 S9 89.4 124.0 129.8 REMARK 620 5 S3C B 406 O8 163.2 95.9 85.2 82.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 170 NE2 REMARK 620 2 FMT B 404 O2 125.9 REMARK 620 3 FMT B 405 O2 110.2 98.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S3C A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SVB A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S3C B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KO3 RELATED DB: PDB REMARK 900 RELATED ID: 1KO2 RELATED DB: PDB REMARK 900 RELATED ID: 4PVT RELATED DB: PDB DBREF 4PVO A 25 300 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 DBREF 4PVO B 25 300 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 SEQADV 4PVO GLY A 23 UNP Q9K2N0 EXPRESSION TAG SEQADV 4PVO PRO A 24 UNP Q9K2N0 EXPRESSION TAG SEQADV 4PVO GLY B 23 UNP Q9K2N0 EXPRESSION TAG SEQADV 4PVO PRO B 24 UNP Q9K2N0 EXPRESSION TAG SEQRES 1 A 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 A 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 A 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 A 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 A 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 A 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 A 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 A 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 A 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 A 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 A 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 A 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 A 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 A 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 A 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 A 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 A 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 A 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 A 242 HIS THR ASN ARG SER VAL VAL GLU SEQRES 1 B 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 B 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 B 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 B 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 B 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 B 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 B 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 B 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 B 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 B 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 B 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 B 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 B 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 B 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 B 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 B 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 B 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 B 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 B 242 HIS THR ASN ARG SER VAL VAL GLU HET ZN A 401 1 HET ZN A 402 1 HET S3C A 403 15 HET SVB A 404 18 HET ZN A 405 1 HET FMT A 406 3 HET FMT A 407 3 HET DMS A 408 4 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET FMT B 404 3 HET FMT B 405 3 HET S3C B 406 15 HETNAM ZN ZINC ION HETNAM S3C (2Z)-2-SULFANYL-3-(2,3,6-TRICHLOROPHENYL)PROP-2-ENOIC HETNAM 2 S3C ACID HETNAM SVB N-(4-METHYLPIPERAZIN-1-YL)-2-[(5Z)-4-OXO-2-THIOXO-5-(2, HETNAM 2 SVB 3,6-TRICHLOROBENZYLIDENE)-1,3-THIAZOLIDIN-3- HETNAM 3 SVB YL]ACETAMIDE HETNAM FMT FORMIC ACID HETNAM DMS DIMETHYL SULFOXIDE FORMUL 3 ZN 6(ZN 2+) FORMUL 5 S3C 2(C9 H5 CL3 O2 S) FORMUL 6 SVB C17 H17 CL3 N4 O2 S2 FORMUL 8 FMT 4(C H2 O2) FORMUL 10 DMS C2 H6 O S FORMUL 17 HOH *536(H2 O) HELIX 1 1 THR A 33 ILE A 37 5 5 HELIX 2 2 GLY A 88 ILE A 104 1 16 HELIX 3 3 HIS A 118 GLY A 123 1 6 HELIX 4 4 GLY A 124 ALA A 131 1 8 HELIX 5 5 SER A 139 GLY A 150 1 12 HELIX 6 6 CYS A 221 ILE A 223 5 3 HELIX 7 7 GLU A 241 TYR A 253 1 13 HELIX 8 8 LEU A 280 ASN A 295 1 16 HELIX 9 9 THR B 33 ILE B 37 5 5 HELIX 10 10 GLY B 88 ILE B 104 1 16 HELIX 11 11 HIS B 118 GLY B 123 1 6 HELIX 12 12 GLY B 124 ALA B 131 1 8 HELIX 13 13 SER B 139 GLY B 150 1 12 HELIX 14 14 CYS B 221 ILE B 223 5 3 HELIX 15 15 GLU B 241 TYR B 253 1 13 HELIX 16 16 LEU B 280 ASN B 295 1 16 SHEET 1 A 7 ARG A 43 ALA A 49 0 SHEET 2 A 7 VAL A 52 PHE A 61 -1 O ILE A 56 N ARG A 43 SHEET 3 A 7 ALA A 64 ASP A 76 -1 O TYR A 67 N GLN A 59 SHEET 4 A 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 A 7 VAL A 109 VAL A 113 1 O ARG A 111 N LEU A 82 SHEET 6 A 7 ALA A 135 ALA A 138 1 O TYR A 137 N ALA A 112 SHEET 7 A 7 HIS A 170 SER A 171 1 O HIS A 170 N THR A 136 SHEET 1 B 5 ASP A 180 PHE A 184 0 SHEET 2 B 5 VAL A 187 TYR A 191 -1 O LEU A 189 N VAL A 182 SHEET 3 B 5 VAL A 202 VAL A 205 -1 O VAL A 202 N PHE A 190 SHEET 4 B 5 VAL A 216 GLY A 220 -1 O TYR A 218 N VAL A 203 SHEET 5 B 5 PHE A 258 PRO A 261 1 O PHE A 258 N LEU A 217 SHEET 1 C 7 ARG B 43 ALA B 49 0 SHEET 2 C 7 VAL B 52 PHE B 61 -1 O SER B 54 N TYR B 45 SHEET 3 C 7 ALA B 64 ASP B 76 -1 O ALA B 64 N PHE B 61 SHEET 4 C 7 GLU B 79 ILE B 83 -1 O GLU B 79 N ASP B 76 SHEET 5 C 7 VAL B 109 VAL B 113 1 O ARG B 111 N LEU B 82 SHEET 6 C 7 ALA B 135 ALA B 138 1 O ALA B 135 N ALA B 112 SHEET 7 C 7 HIS B 170 SER B 171 1 O HIS B 170 N THR B 136 SHEET 1 D 5 ASP B 180 PHE B 184 0 SHEET 2 D 5 VAL B 187 TYR B 191 -1 O LEU B 189 N VAL B 182 SHEET 3 D 5 VAL B 202 VAL B 205 -1 O VAL B 202 N PHE B 190 SHEET 4 D 5 VAL B 216 GLY B 220 -1 O TYR B 218 N VAL B 203 SHEET 5 D 5 PHE B 258 PRO B 261 1 O PHE B 258 N LEU B 217 LINK NE2 HIS A 116 ZN ZN A 401 1555 1555 2.05 LINK ND1 HIS A 118 ZN ZN A 401 1555 1555 1.99 LINK OD2 ASP A 120 ZN ZN A 402 1555 1555 2.17 LINK NE2 HIS A 196 ZN ZN A 401 1555 1555 2.04 LINK SG CYS A 221 ZN ZN A 402 1555 1555 2.28 LINK NE2 HIS A 263 ZN ZN A 402 1555 1555 2.05 LINK ND1 HIS A 285 ZN ZN A 405 1555 1555 2.03 LINK ZN ZN A 401 S9 S3C A 403 1555 1555 2.26 LINK ZN ZN A 402 O7 S3C A 403 1555 1555 2.18 LINK ZN ZN A 402 S9 S3C A 403 1555 1555 2.32 LINK ZN ZN A 405 O2 FMT A 407 1555 1555 1.89 LINK NE2 HIS B 116 ZN ZN B 401 1555 1555 2.03 LINK ND1 HIS B 118 ZN ZN B 401 1555 1555 1.98 LINK OD2 ASP B 120 ZN ZN B 402 1555 1555 2.14 LINK NE2 HIS B 170 ZN ZN B 403 1555 1555 2.04 LINK NE2 HIS B 196 ZN ZN B 401 1555 1555 2.02 LINK SG CYS B 221 ZN ZN B 402 1555 1555 2.27 LINK NE2 HIS B 263 ZN ZN B 402 1555 1555 2.03 LINK ZN ZN B 401 S9 S3C B 406 1555 1555 2.18 LINK ZN ZN B 402 S9 S3C B 406 1555 1555 2.24 LINK ZN ZN B 402 O8 S3C B 406 1555 1555 2.26 LINK ZN ZN B 403 O2 FMT B 404 1555 1555 1.94 LINK ZN ZN B 403 O2 FMT B 405 1555 1555 1.90 SITE 1 AC1 4 HIS A 116 HIS A 118 HIS A 196 S3C A 403 SITE 1 AC2 4 ASP A 120 CYS A 221 HIS A 263 S3C A 403 SITE 1 AC3 13 TRP A 87 HIS A 118 ASP A 120 HIS A 196 SITE 2 AC3 13 CYS A 221 ARG A 228 ASN A 233 HIS A 263 SITE 3 AC3 13 ZN A 401 ZN A 402 SVB A 404 HOH A 501 SITE 4 AC3 13 HOH A 507 SITE 1 AC4 7 PHE A 61 TYR A 67 GLY A 232 ASN A 233 SITE 2 AC4 7 HIS A 263 S3C A 403 GLY B 63 SITE 1 AC5 4 HIS A 170 HIS A 285 FMT A 406 FMT A 407 SITE 1 AC6 8 THR A 169 HIS A 170 HIS A 285 ASN A 288 SITE 2 AC6 8 ZN A 405 FMT A 407 HOH A 568 HOH A 757 SITE 1 AC7 7 ALA A 135 HIS A 170 HIS A 285 ASN A 288 SITE 2 AC7 7 ZN A 405 FMT A 406 HOH A 739 SITE 1 AC8 4 PRO A 107 VAL A 109 HOH A 546 HOH A 746 SITE 1 AC9 5 HIS B 116 HIS B 118 HIS B 196 ZN B 402 SITE 2 AC9 5 S3C B 406 SITE 1 BC1 5 ASP B 120 CYS B 221 HIS B 263 ZN B 401 SITE 2 BC1 5 S3C B 406 SITE 1 BC2 3 HIS B 170 FMT B 404 FMT B 405 SITE 1 BC3 5 ALA B 135 HIS B 170 ZN B 403 FMT B 405 SITE 2 BC3 5 HOH B 545 SITE 1 BC4 6 ALA B 135 THR B 169 HIS B 170 ZN B 403 SITE 2 BC4 6 FMT B 404 HOH B 510 SITE 1 BC5 12 TRP B 87 HIS B 116 HIS B 118 ASP B 120 SITE 2 BC5 12 HIS B 196 CYS B 221 ARG B 228 ASN B 233 SITE 3 BC5 12 HIS B 263 ZN B 401 ZN B 402 HOH B 506 CRYST1 104.570 79.239 67.967 90.00 131.57 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009563 0.000000 0.008481 0.00000 SCALE2 0.000000 0.012620 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019666 0.00000