HEADER HYDROLASE/HYDROLASE INHIBITOR 18-MAR-14 4PVT TITLE CRYSTAL STRUCTURE OF VIM-2 METALLO-BETA-LACTAMASE IN COMPLEX WITH TITLE 2 ML302F COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE CLASS B VIM-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 27-266; COMPND 5 SYNONYM: CLASS B BETA-LACTAMASE, METALLO BETA-LACTAMASE, METALLO- COMPND 6 BETA-LACTAMASE, METALLO-BETA-LACTAMASE VIM-2, METTALO-BETA-LACTAMASE COMPND 7 VIM-2, VIM-2, VIM-2 CLASS B METALLO B-LACTAMASE, VIM-2 PROTEIN, VIM-2 COMPND 8 TYPE METALLO-BETA-LACTAMASE; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLA-VIM-2, BLASVIM-2, BLAVIM-2, BLAVIM2, VIM-2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPIN-F VIM-2 KEYWDS ALPHA-BETA/BETA-ALPHA, BETA-LACTAMASE, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.S.AIK,J.BREM,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 3 08-NOV-23 4PVT 1 REMARK SEQADV LINK REVDAT 2 25-FEB-15 4PVT 1 JRNL REVDAT 1 19-NOV-14 4PVT 0 JRNL AUTH J.BREM,S.S.VAN BERKEL,W.AIK,A.M.RYDZIK,M.B.AVISON, JRNL AUTH 2 I.PETTINATI,K.D.UMLAND,A.KAWAMURA,J.SPENCER,T.D.CLARIDGE, JRNL AUTH 3 M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL RHODANINE HYDROLYSIS LEADS TO POTENT THIOENOLATE MEDIATED JRNL TITL 2 METALLO-BETA-LACTAMASE INHIBITION. JRNL REF NAT.CHEM. V. 6 1084 2014 JRNL REFN ISSN 1755-4330 JRNL PMID 25411887 JRNL DOI 10.1038/NCHEM.2110 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4-1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9281 - 4.8138 0.99 0 151 0.1733 0.2275 REMARK 3 2 2.0518 - 2.0018 0.95 0 134 0.2156 0.2581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 30:42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7874 0.6748 68.2778 REMARK 3 T TENSOR REMARK 3 T11: 0.2488 T22: 0.3154 REMARK 3 T33: 0.3964 T12: 0.0530 REMARK 3 T13: -0.0162 T23: 0.1195 REMARK 3 L TENSOR REMARK 3 L11: 5.2392 L22: 2.6138 REMARK 3 L33: 4.3833 L12: -1.5468 REMARK 3 L13: -2.7930 L23: 1.1972 REMARK 3 S TENSOR REMARK 3 S11: -0.4681 S12: -1.1181 S13: -0.8665 REMARK 3 S21: 0.7033 S22: 0.4079 S23: 0.5148 REMARK 3 S31: 0.5492 S32: 0.1586 S33: 0.0930 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 43:63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0173 4.7467 62.3015 REMARK 3 T TENSOR REMARK 3 T11: 0.2160 T22: 0.1259 REMARK 3 T33: 0.1995 T12: 0.0070 REMARK 3 T13: -0.0482 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 3.5700 L22: 2.0214 REMARK 3 L33: 7.4068 L12: 0.7141 REMARK 3 L13: -5.1036 L23: -0.5294 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0945 S13: -0.4123 REMARK 3 S21: 0.1010 S22: -0.0824 S23: -0.0709 REMARK 3 S31: 0.1920 S32: 0.2941 S33: 0.1237 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 64:222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7972 13.9371 53.6770 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: 0.0993 REMARK 3 T33: 0.1014 T12: -0.0140 REMARK 3 T13: 0.0257 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.9300 L22: 1.7396 REMARK 3 L33: 1.6707 L12: 0.2267 REMARK 3 L13: 0.4369 L23: 0.6509 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: -0.0282 S13: 0.0637 REMARK 3 S21: -0.0681 S22: 0.0126 S23: -0.0747 REMARK 3 S31: -0.0835 S32: 0.0458 S33: -0.0160 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 223:238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8353 -1.1172 53.2336 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.2300 REMARK 3 T33: 0.1966 T12: 0.0140 REMARK 3 T13: 0.0298 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 3.3221 L22: 4.4093 REMARK 3 L33: 0.9153 L12: -2.8233 REMARK 3 L13: 1.7254 L23: -1.2356 REMARK 3 S TENSOR REMARK 3 S11: -0.1026 S12: -0.3300 S13: -0.4177 REMARK 3 S21: 0.4582 S22: 0.2805 S23: 0.4022 REMARK 3 S31: -0.0364 S32: -0.4868 S33: -0.0869 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 239:279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2162 0.1420 45.1348 REMARK 3 T TENSOR REMARK 3 T11: 0.2162 T22: 0.1603 REMARK 3 T33: 0.1716 T12: -0.0154 REMARK 3 T13: 0.0239 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.9165 L22: 1.0597 REMARK 3 L33: 1.7227 L12: -0.0555 REMARK 3 L13: 0.0914 L23: 0.2212 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.2786 S13: -0.1438 REMARK 3 S21: -0.1663 S22: -0.0262 S23: -0.1832 REMARK 3 S31: 0.0776 S32: 0.1784 S33: 0.0352 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 280:296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8229 -6.3216 46.6707 REMARK 3 T TENSOR REMARK 3 T11: 0.1840 T22: 0.1093 REMARK 3 T33: 0.1324 T12: -0.0016 REMARK 3 T13: 0.0050 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 5.7577 L22: 2.4415 REMARK 3 L33: 1.9724 L12: 0.6995 REMARK 3 L13: 0.2619 L23: 0.0302 REMARK 3 S TENSOR REMARK 3 S11: -0.0804 S12: 0.0971 S13: -0.2878 REMARK 3 S21: 0.0085 S22: -0.0369 S23: 0.0781 REMARK 3 S31: 0.2519 S32: -0.1647 S33: 0.0772 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 30:63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9592 -7.2345 81.0862 REMARK 3 T TENSOR REMARK 3 T11: 0.2305 T22: 0.2233 REMARK 3 T33: 0.3678 T12: -0.0580 REMARK 3 T13: -0.0628 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.8847 L22: 2.1433 REMARK 3 L33: 7.0806 L12: -0.0872 REMARK 3 L13: -1.2657 L23: 0.7462 REMARK 3 S TENSOR REMARK 3 S11: -0.2496 S12: -0.1380 S13: 0.6616 REMARK 3 S21: 0.0870 S22: 0.0250 S23: -0.3562 REMARK 3 S31: -0.6811 S32: 0.9186 S33: 0.1306 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 64:279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.6991 -15.0564 77.3914 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1182 REMARK 3 T33: 0.0888 T12: -0.0008 REMARK 3 T13: 0.0076 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.4332 L22: 1.9436 REMARK 3 L33: 1.3388 L12: -0.4617 REMARK 3 L13: 0.3138 L23: -0.4293 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: 0.0218 S13: 0.0071 REMARK 3 S21: 0.0374 S22: -0.0069 S23: -0.0492 REMARK 3 S31: -0.0005 S32: 0.0536 S33: 0.0202 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 280:296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.7977 1.3626 69.1523 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.0882 REMARK 3 T33: 0.1860 T12: 0.0143 REMARK 3 T13: 0.0016 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 6.9144 L22: 4.6812 REMARK 3 L33: 2.7147 L12: -0.8802 REMARK 3 L13: 3.3810 L23: -2.3631 REMARK 3 S TENSOR REMARK 3 S11: -0.2925 S12: 0.2471 S13: 0.0866 REMARK 3 S21: 0.0664 S22: -0.1602 S23: -0.1416 REMARK 3 S31: -0.1737 S32: 0.1684 S33: 0.4656 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8480 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.52100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 4PVO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1MM TCEP, 1MM ML302F, 50MM HEPES PH REMARK 280 7.5, 100MM NACL, 0.1MM ZNCL2, 0.1M MAGNESIUM FORMATE, 23% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.19550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.45450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.19550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.45450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 PRO A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 SER A 297 REMARK 465 VAL A 298 REMARK 465 VAL A 299 REMARK 465 GLU A 300 REMARK 465 GLY B 23 REMARK 465 PRO B 24 REMARK 465 VAL B 25 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 SER B 297 REMARK 465 VAL B 298 REMARK 465 VAL B 299 REMARK 465 GLU B 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 SER A 35 OG REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 ARG A 75 CZ NH1 NH2 REMARK 470 ASP A 78 CG OD1 OD2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 GLU A 100 CD OE1 OE2 REMARK 470 GLU A 247 CD OE1 OE2 REMARK 470 GLN A 251 CD OE1 NE2 REMARK 470 SER B 35 OG REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 ASP B 78 CG OD1 OD2 REMARK 470 LYS B 90 CD CE NZ REMARK 470 GLN B 251 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 538 O HOH A 630 2.10 REMARK 500 O HOH A 582 O HOH A 587 2.13 REMARK 500 O HOH B 554 O HOH B 607 2.13 REMARK 500 OD2 ASP A 236 O HOH A 592 2.15 REMARK 500 O HOH B 640 O HOH B 646 2.17 REMARK 500 OE2 GLU A 188 O HOH A 611 2.17 REMARK 500 O HOH B 635 O HOH B 638 2.19 REMARK 500 OE1 GLU B 30 OH TYR B 45 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 152.31 70.86 REMARK 500 ALA A 86 33.83 -98.05 REMARK 500 TRP A 87 71.83 68.03 REMARK 500 ALA A 195 -97.80 -148.15 REMARK 500 ASP B 84 147.41 73.89 REMARK 500 TRP B 87 67.96 70.74 REMARK 500 ALA B 195 -104.21 -152.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 97.7 REMARK 620 3 HIS A 196 NE2 100.2 109.3 REMARK 620 4 S3C A 403 S9 114.2 122.0 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 221 SG 104.8 REMARK 620 3 HIS A 263 NE2 94.6 104.2 REMARK 620 4 S3C A 403 S9 95.6 122.6 127.1 REMARK 620 5 S3C A 403 O8 163.6 91.1 77.4 78.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 285 ND1 REMARK 620 2 FMT A 405 O1 107.3 REMARK 620 3 FMT A 406 O1 86.2 148.3 REMARK 620 4 FMT A 406 O2 108.7 95.5 52.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 98.0 REMARK 620 3 HIS B 196 NE2 99.4 105.0 REMARK 620 4 S3C B 406 S9 117.7 115.0 118.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD2 REMARK 620 2 CYS B 221 SG 100.4 REMARK 620 3 HIS B 263 NE2 94.6 104.4 REMARK 620 4 S3C B 406 O7 163.6 95.9 79.8 REMARK 620 5 S3C B 406 S9 89.0 127.1 126.8 82.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 170 NE2 REMARK 620 2 FMT B 404 O1 92.1 REMARK 620 3 FMT B 404 O2 128.6 49.4 REMARK 620 4 FMT B 405 O1 112.8 148.2 98.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S3C A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S3C B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KO3 RELATED DB: PDB REMARK 900 RELATED ID: 1KO2 RELATED DB: PDB REMARK 900 RELATED ID: 4PVO RELATED DB: PDB DBREF 4PVT A 25 300 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 DBREF 4PVT B 25 300 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 SEQADV 4PVT GLY A 23 UNP Q9K2N0 EXPRESSION TAG SEQADV 4PVT PRO A 24 UNP Q9K2N0 EXPRESSION TAG SEQADV 4PVT GLY B 23 UNP Q9K2N0 EXPRESSION TAG SEQADV 4PVT PRO B 24 UNP Q9K2N0 EXPRESSION TAG SEQRES 1 A 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 A 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 A 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 A 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 A 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 A 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 A 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 A 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 A 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 A 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 A 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 A 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 A 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 A 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 A 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 A 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 A 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 A 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 A 242 HIS THR ASN ARG SER VAL VAL GLU SEQRES 1 B 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 B 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 B 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 B 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 B 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 B 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 B 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 B 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 B 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 B 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 B 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 B 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 B 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 B 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 B 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 B 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 B 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 B 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 B 242 HIS THR ASN ARG SER VAL VAL GLU HET ZN A 401 1 HET ZN A 402 1 HET S3C A 403 15 HET ZN A 404 1 HET FMT A 405 3 HET FMT A 406 3 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET FMT B 404 3 HET FMT B 405 3 HET S3C B 406 15 HET GOL B 407 6 HETNAM ZN ZINC ION HETNAM S3C (2Z)-2-SULFANYL-3-(2,3,6-TRICHLOROPHENYL)PROP-2-ENOIC HETNAM 2 S3C ACID HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 6(ZN 2+) FORMUL 5 S3C 2(C9 H5 CL3 O2 S) FORMUL 7 FMT 4(C H2 O2) FORMUL 15 GOL C3 H8 O3 FORMUL 16 HOH *346(H2 O) HELIX 1 1 THR A 33 ILE A 37 5 5 HELIX 2 2 GLY A 88 ILE A 104 1 16 HELIX 3 3 HIS A 118 GLY A 123 1 6 HELIX 4 4 GLY A 124 ALA A 131 1 8 HELIX 5 5 SER A 139 GLY A 150 1 12 HELIX 6 6 CYS A 221 ILE A 223 5 3 HELIX 7 7 GLU A 241 TYR A 253 1 13 HELIX 8 8 LEU A 280 ASN A 295 1 16 HELIX 9 9 THR B 33 ILE B 37 5 5 HELIX 10 10 GLY B 88 ILE B 104 1 16 HELIX 11 11 HIS B 118 GLY B 123 1 6 HELIX 12 12 GLY B 124 ALA B 131 1 8 HELIX 13 13 SER B 139 GLY B 150 1 12 HELIX 14 14 CYS B 221 ILE B 223 5 3 HELIX 15 15 GLU B 241 TYR B 253 1 13 HELIX 16 16 LEU B 280 ASN B 295 1 16 SHEET 1 A 7 ARG A 43 ALA A 49 0 SHEET 2 A 7 VAL A 52 PHE A 61 -1 O ILE A 56 N ARG A 43 SHEET 3 A 7 ALA A 64 ASP A 76 -1 O TYR A 67 N GLN A 59 SHEET 4 A 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 A 7 VAL A 109 VAL A 113 1 O ARG A 111 N LEU A 82 SHEET 6 A 7 ALA A 135 ALA A 138 1 O TYR A 137 N ALA A 112 SHEET 7 A 7 HIS A 170 SER A 171 1 O HIS A 170 N THR A 136 SHEET 1 B 5 ALA A 181 PHE A 184 0 SHEET 2 B 5 VAL A 187 PHE A 190 -1 O LEU A 189 N VAL A 182 SHEET 3 B 5 VAL A 202 VAL A 205 -1 O TYR A 204 N GLU A 188 SHEET 4 B 5 VAL A 216 GLY A 220 -1 O TYR A 218 N VAL A 203 SHEET 5 B 5 PHE A 258 PRO A 261 1 O PHE A 258 N LEU A 217 SHEET 1 C 7 ARG B 43 ALA B 49 0 SHEET 2 C 7 VAL B 52 PHE B 61 -1 O ILE B 56 N ARG B 43 SHEET 3 C 7 ALA B 64 ASP B 76 -1 O ILE B 73 N TRP B 53 SHEET 4 C 7 GLU B 79 ILE B 83 -1 O ILE B 83 N LEU B 72 SHEET 5 C 7 VAL B 109 VAL B 113 1 O ARG B 111 N LEU B 82 SHEET 6 C 7 ALA B 135 ALA B 138 1 O TYR B 137 N ALA B 112 SHEET 7 C 7 HIS B 170 SER B 171 1 O HIS B 170 N THR B 136 SHEET 1 D 5 ALA B 181 PHE B 184 0 SHEET 2 D 5 VAL B 187 PHE B 190 -1 O LEU B 189 N VAL B 182 SHEET 3 D 5 VAL B 202 VAL B 205 -1 O TYR B 204 N GLU B 188 SHEET 4 D 5 VAL B 216 GLY B 220 -1 O TYR B 218 N VAL B 203 SHEET 5 D 5 PHE B 258 PRO B 261 1 O PHE B 258 N LEU B 217 LINK NE2 HIS A 116 ZN ZN A 401 1555 1555 2.25 LINK ND1 HIS A 118 ZN ZN A 401 1555 1555 1.93 LINK OD2 ASP A 120 ZN ZN A 402 1555 1555 2.04 LINK NE2 HIS A 196 ZN ZN A 401 1555 1555 2.09 LINK SG CYS A 221 ZN ZN A 402 1555 1555 2.24 LINK NE2 HIS A 263 ZN ZN A 402 1555 1555 2.08 LINK ND1 HIS A 285 ZN ZN A 404 1555 1555 2.24 LINK ZN ZN A 401 S9 S3C A 403 1555 1555 2.25 LINK ZN ZN A 402 S9 S3C A 403 1555 1555 2.23 LINK ZN ZN A 402 O8 S3C A 403 1555 1555 2.37 LINK ZN ZN A 404 O1 FMT A 405 1555 1555 1.82 LINK ZN ZN A 404 O1 FMT A 406 1555 1555 2.69 LINK ZN ZN A 404 O2 FMT A 406 1555 1555 1.98 LINK NE2 HIS B 116 ZN ZN B 401 1555 1555 2.14 LINK ND1 HIS B 118 ZN ZN B 401 1555 1555 2.05 LINK OD2 ASP B 120 ZN ZN B 402 1555 1555 2.08 LINK NE2 HIS B 170 ZN ZN B 403 1555 1555 2.06 LINK NE2 HIS B 196 ZN ZN B 401 1555 1555 2.02 LINK SG CYS B 221 ZN ZN B 402 1555 1555 2.34 LINK NE2 HIS B 263 ZN ZN B 402 1555 1555 2.08 LINK ZN ZN B 401 S9 S3C B 406 1555 1555 2.26 LINK ZN ZN B 402 O7 S3C B 406 1555 1555 2.32 LINK ZN ZN B 402 S9 S3C B 406 1555 1555 2.33 LINK ZN ZN B 403 O1 FMT B 404 1555 1555 2.85 LINK ZN ZN B 403 O2 FMT B 404 1555 1555 1.94 LINK ZN ZN B 403 O1 FMT B 405 1555 1555 2.13 SITE 1 AC1 4 HIS A 116 HIS A 118 HIS A 196 S3C A 403 SITE 1 AC2 4 ASP A 120 CYS A 221 HIS A 263 S3C A 403 SITE 1 AC3 12 TRP A 87 HIS A 118 ASP A 120 HIS A 196 SITE 2 AC3 12 CYS A 221 ARG A 228 ASN A 233 HIS A 263 SITE 3 AC3 12 ZN A 401 ZN A 402 HOH A 501 HOH A 560 SITE 1 AC4 4 HIS A 170 HIS A 285 FMT A 405 FMT A 406 SITE 1 AC5 9 ALA A 135 THR A 136 THR A 169 HIS A 170 SITE 2 AC5 9 HIS A 285 ASN A 288 ZN A 404 FMT A 406 SITE 3 AC5 9 HOH A 514 SITE 1 AC6 6 ALA A 135 HIS A 170 HIS A 285 ASN A 288 SITE 2 AC6 6 ZN A 404 FMT A 405 SITE 1 AC7 4 HIS B 116 HIS B 118 HIS B 196 S3C B 406 SITE 1 AC8 4 ASP B 120 CYS B 221 HIS B 263 S3C B 406 SITE 1 AC9 3 HIS B 170 FMT B 404 FMT B 405 SITE 1 BC1 5 ALA B 135 HIS B 170 ZN B 403 FMT B 405 SITE 2 BC1 5 HOH B 543 SITE 1 BC2 7 ALA B 135 THR B 136 THR B 169 HIS B 170 SITE 2 BC2 7 ZN B 403 FMT B 404 HOH B 509 SITE 1 BC3 12 TRP B 87 HIS B 118 ASP B 120 HIS B 196 SITE 2 BC3 12 CYS B 221 ASN B 233 HIS B 263 ZN B 401 SITE 3 BC3 12 ZN B 402 GOL B 407 HOH B 505 HOH B 546 SITE 1 BC4 4 TYR B 67 ARG B 228 HIS B 263 S3C B 406 CRYST1 102.391 78.909 67.742 90.00 130.32 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009766 0.000000 0.008288 0.00000 SCALE2 0.000000 0.012673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019361 0.00000