HEADER TRANSFERASE/TRANSFERASE INHIBITOR 18-MAR-14 4PVV TITLE MICOBACTERIAL ADENOSINE KINASE IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AK; COMPND 5 EC: 2.7.1.20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: ADOK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENOSINE KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.PICHOVA,M.HOCEK,J.DOSTAL,P.REZACOVA REVDAT 2 20-MAR-24 4PVV 1 REMARK SEQADV REVDAT 1 26-NOV-14 4PVV 0 JRNL AUTH J.SNASEL,P.NAUS,J.DOSTAL,A.HNIZDA,J.FANFRLIK,J.BRYNDA, JRNL AUTH 2 A.BOURDERIOUX,M.DUSEK,H.DVORAKOVA,J.STOLARIKOVA,H.ZABRANSKA, JRNL AUTH 3 R.POHL,P.KONECNY,P.DZUBAK,I.VOTRUBA,M.HAJDUCH,P.REZACOVA, JRNL AUTH 4 V.VEVERKA,M.HOCEK,I.PICHOVA JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF MYCOBACTERIAL AND HUMAN JRNL TITL 2 ADENOSINE KINASE BY 7-SUBSTITUTED 7-(HET)ARYL-7-DEAZAADENINE JRNL TITL 3 RIBONUCLEOSIDES JRNL REF J.MED.CHEM. V. 57 8268 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25259627 JRNL DOI 10.1021/JM500497V REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 10287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.341 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 533 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 694 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.47000 REMARK 3 B22 (A**2) : 1.47000 REMARK 3 B33 (A**2) : -2.20000 REMARK 3 B12 (A**2) : 0.73000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.622 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.442 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.386 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.168 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.884 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.809 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2434 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1549 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3316 ; 2.236 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3779 ; 1.135 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 9.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;32.285 ;24.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 363 ;20.323 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.593 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2773 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 496 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4PVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97826 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10333 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 81.417 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.22600 REMARK 200 R SYM FOR SHELL (I) : 0.22600 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0.02 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.41667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 162.83333 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 162.83333 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.41667 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 248 REMARK 465 GLN A 249 REMARK 465 THR A 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 HIS A 29 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 30 CG CD1 CD2 REMARK 470 HIS A 31 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 ARG A 46 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 THR A 247 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 76 O HOH A 508 1.76 REMARK 500 OG SER A 34 O HOH A 505 1.98 REMARK 500 OH TYR A 300 O LEU A 323 2.12 REMARK 500 O LEU A 81 O ARG A 84 2.15 REMARK 500 O LEU A 154 OE1 GLU A 157 2.18 REMARK 500 OG1 THR A 291 OE1 GLU A 295 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 90 CG HIS A 90 CD2 0.063 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 12 CB - CG - OD1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 12 CB - CG - OD2 ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 PRO A 252 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 23 -9.84 -58.95 REMARK 500 LYS A 32 54.22 -150.46 REMARK 500 PHE A 74 39.22 -88.32 REMARK 500 ALA A 100 149.81 -32.40 REMARK 500 ASP A 107 -163.85 -121.10 REMARK 500 ALA A 124 0.06 -51.56 REMARK 500 ALA A 168 131.64 -38.49 REMARK 500 ASP A 169 47.42 -147.89 REMARK 500 SER A 171 -62.24 -3.60 REMARK 500 VAL A 186 53.14 -142.98 REMARK 500 ALA A 189 121.21 -34.44 REMARK 500 LEU A 219 99.06 -179.88 REMARK 500 LYS A 227 -71.91 -79.08 REMARK 500 ASP A 235 39.62 -89.94 REMARK 500 PRO A 252 -67.89 -139.28 REMARK 500 THR A 253 139.82 -35.43 REMARK 500 SER A 268 21.26 -73.79 REMARK 500 LEU A 288 -13.91 -42.30 REMARK 500 THR A 291 -66.23 2.37 REMARK 500 GLN A 294 26.22 -143.62 REMARK 500 ALA A 304 -65.92 -23.54 REMARK 500 SER A 305 30.66 -82.90 REMARK 500 ARG A 306 -43.28 -157.72 REMARK 500 TYR A 311 -163.54 -116.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HO4 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O1L RELATED DB: PDB DBREF 4PVV A 1 324 UNP P83734 ADOK_MYCTU 1 324 SEQADV 4PVV LEU A 113 UNP P83734 ILE 113 CONFLICT SEQRES 1 A 324 MET THR ILE ALA VAL THR GLY SER ILE ALA THR ASP HIS SEQRES 2 A 324 LEU MET ARG PHE PRO GLY ARG PHE SER GLU GLN LEU LEU SEQRES 3 A 324 PRO GLU HIS LEU HIS LYS VAL SER LEU SER PHE LEU VAL SEQRES 4 A 324 ASP ASP LEU VAL MET HIS ARG GLY GLY VAL ALA GLY ASN SEQRES 5 A 324 MET ALA PHE ALA ILE GLY VAL LEU GLY GLY GLU VAL ALA SEQRES 6 A 324 LEU VAL GLY ALA ALA GLY ALA ASP PHE ALA ASP TYR ARG SEQRES 7 A 324 ASP TRP LEU LYS ALA ARG GLY VAL ASN CYS ASP HIS VAL SEQRES 8 A 324 LEU ILE SER GLU THR ALA HIS THR ALA ARG PHE THR CYS SEQRES 9 A 324 THR THR ASP VAL ASP MET ALA GLN LEU ALA SER PHE TYR SEQRES 10 A 324 PRO GLY ALA MET SER GLU ALA ARG ASN ILE LYS LEU ALA SEQRES 11 A 324 ASP VAL VAL SER ALA ILE GLY LYS PRO GLU LEU VAL ILE SEQRES 12 A 324 ILE GLY ALA ASN ASP PRO GLU ALA MET PHE LEU HIS THR SEQRES 13 A 324 GLU GLU CYS ARG LYS LEU GLY LEU ALA PHE ALA ALA ASP SEQRES 14 A 324 PRO SER GLN GLN LEU ALA ARG LEU SER GLY GLU GLU ILE SEQRES 15 A 324 ARG ARG LEU VAL ASN GLY ALA ALA TYR LEU PHE THR ASN SEQRES 16 A 324 ASP TYR GLU TRP ASP LEU LEU LEU SER LYS THR GLY TRP SEQRES 17 A 324 SER GLU ALA ASP VAL MET ALA GLN ILE ASP LEU ARG VAL SEQRES 18 A 324 THR THR LEU GLY PRO LYS GLY VAL ASP LEU VAL GLU PRO SEQRES 19 A 324 ASP GLY THR THR ILE HIS VAL GLY VAL VAL PRO GLU THR SEQRES 20 A 324 SER GLN THR ASP PRO THR GLY VAL GLY ASP ALA PHE ARG SEQRES 21 A 324 ALA GLY PHE LEU THR GLY ARG SER ALA GLY LEU GLY LEU SEQRES 22 A 324 GLU ARG SER ALA GLN LEU GLY SER LEU VAL ALA VAL LEU SEQRES 23 A 324 VAL LEU GLU SER THR GLY THR GLN GLU TRP GLN TRP ASP SEQRES 24 A 324 TYR GLU ALA ALA ALA SER ARG LEU ALA GLY ALA TYR GLY SEQRES 25 A 324 GLU HIS ALA ALA ALA GLU ILE VAL ALA VAL LEU ALA HET HO4 A 401 21 HETNAM HO4 5-ETHYNYL-7-(BETA-D-RIBOFURANOSYL)-7H-PYRROLO[2,3- HETNAM 2 HO4 D]PYRIMIDIN-4-AMINE FORMUL 2 HO4 C13 H14 N4 O4 FORMUL 3 HOH *8(H2 O) HELIX 1 1 PHE A 21 LEU A 26 1 6 HELIX 2 2 GLY A 48 LEU A 60 1 13 HELIX 3 3 PHE A 74 ARG A 84 1 11 HELIX 4 4 CYS A 88 VAL A 91 5 4 HELIX 5 5 MET A 121 ASN A 126 5 6 HELIX 6 6 LEU A 129 GLY A 137 1 9 HELIX 7 7 ASP A 148 LEU A 162 1 15 HELIX 8 8 GLN A 172 LEU A 177 1 6 HELIX 9 9 SER A 178 ARG A 184 1 7 HELIX 10 10 ASP A 196 GLY A 207 1 12 HELIX 11 11 SER A 209 ILE A 217 1 9 HELIX 12 12 GLY A 254 SER A 268 1 15 HELIX 13 13 GLY A 272 LEU A 288 1 17 HELIX 14 14 ASP A 299 TYR A 311 1 13 HELIX 15 15 GLY A 312 ALA A 324 1 13 SHEET 1 A 7 VAL A 86 ASN A 87 0 SHEET 2 A 7 VAL A 64 VAL A 67 1 N VAL A 64 O ASN A 87 SHEET 3 A 7 ILE A 3 THR A 6 1 N VAL A 5 O ALA A 65 SHEET 4 A 7 LEU A 141 ILE A 144 1 O LEU A 141 N ALA A 4 SHEET 5 A 7 PHE A 166 ALA A 168 1 O ALA A 167 N VAL A 142 SHEET 6 A 7 TYR A 191 ASN A 195 1 O PHE A 193 N ALA A 168 SHEET 7 A 7 ARG A 220 THR A 223 1 O VAL A 221 N LEU A 192 SHEET 1 B 4 ASP A 41 GLY A 47 0 SHEET 2 B 4 ALA A 10 ARG A 16 -1 N ALA A 10 O GLY A 47 SHEET 3 B 4 THR A 99 THR A 106 1 O PHE A 102 N HIS A 13 SHEET 4 B 4 GLN A 112 GLY A 119 -1 O LEU A 113 N THR A 105 SHEET 1 C 2 ALA A 69 ALA A 70 0 SHEET 2 C 2 LEU A 92 ILE A 93 1 O LEU A 92 N ALA A 70 SHEET 1 D 2 GLY A 228 ASP A 230 0 SHEET 2 D 2 HIS A 240 GLY A 242 -1 O VAL A 241 N VAL A 229 CISPEP 1 ASP A 109 MET A 110 0 21.15 SITE 1 AC1 14 SER A 8 ALA A 10 ASP A 12 GLY A 47 SITE 2 AC1 14 GLY A 48 VAL A 49 ASN A 52 PHE A 102 SITE 3 AC1 14 PHE A 116 ALA A 146 GLN A 172 THR A 253 SITE 4 AC1 14 ASP A 257 HOH A 501 CRYST1 46.985 46.985 244.250 90.00 90.00 120.00 P 31 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021283 0.012288 0.000000 0.00000 SCALE2 0.000000 0.024576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004094 0.00000