HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-MAR-14 4PW1 TITLE CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION (CLOLEP_02462) TITLE 2 FROM CLOSTRIDIUM LEPTUM DSM 753 AT 2.10 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM LEPTUM; SOURCE 3 ORGANISM_TAXID: 428125; SOURCE 4 STRAIN: DSM 753; SOURCE 5 GENE: CLOLEP_02462; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS AN ORPHAN PROTEIN, UNIQUE FOLD: A NINE STRANDED ANTI-PARALLEL BETA KEYWDS 2 SHEET SURROUNDED BY ALPHA-HELICES, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 4 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4PW1 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4PW1 1 JRNL REVDAT 3 22-NOV-17 4PW1 1 REMARK REVDAT 2 24-DEC-14 4PW1 1 TITLE REVDAT 1 18-JUN-14 4PW1 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (CLOLEP_02462) JRNL TITL 2 FROM CLOSTRIDIUM LEPTUM DSM 753 AT 2.10 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 33813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2300 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37000 REMARK 3 B22 (A**2) : -1.37000 REMARK 3 B33 (A**2) : 2.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.664 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3715 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3328 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5040 ; 1.541 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7676 ; 1.050 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 5.920 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;36.445 ;24.785 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 578 ;12.339 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;13.774 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4294 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 907 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): 56.1216 24.7379 15.7288 REMARK 3 T TENSOR REMARK 3 T11: 0.0908 T22: 0.1227 REMARK 3 T33: 0.0067 T12: -0.0133 REMARK 3 T13: -0.0095 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.4863 L22: 1.1684 REMARK 3 L33: 0.6661 L12: -0.2045 REMARK 3 L13: -0.1322 L23: -0.0883 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.1206 S13: -0.0681 REMARK 3 S21: 0.0749 S22: -0.0014 S23: -0.0440 REMARK 3 S31: 0.0186 S32: 0.0471 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 49 B 285 REMARK 3 ORIGIN FOR THE GROUP (A): 46.7982 13.4668 -15.3272 REMARK 3 T TENSOR REMARK 3 T11: 0.1309 T22: 0.0899 REMARK 3 T33: 0.0054 T12: -0.0099 REMARK 3 T13: -0.0048 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.2740 L22: 1.2970 REMARK 3 L33: 0.6988 L12: -0.2217 REMARK 3 L13: 0.0028 L23: -0.1507 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.0013 S13: -0.0642 REMARK 3 S21: -0.1053 S22: 0.0144 S23: -0.0285 REMARK 3 S31: 0.0555 S32: 0.0386 S33: -0.0115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5. GLYCEROL (GOL) USED AS A CRYOPROTECTANT HAS BEEN MODELED INTO REMARK 3 THE STRUCTURE REMARK 4 REMARK 4 4PW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.33 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97959,0.97903 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33887 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.907 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28500 REMARK 200 R SYM FOR SHELL (I) : 0.28500 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20M LITHIUM SULFATE, 0.90M DI REMARK 280 -POTASSIUM HYDROGEN PHOSPHATE, 1.083M SODIUM DIHYDROGEN REMARK 280 PHOSPHATE, 0.1M GLYCINE PH 9.33, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.12750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.05050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.05050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.56375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.05050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.05050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 160.69125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.05050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.05050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.56375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.05050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.05050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 160.69125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.12750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 TYR A 35 REMARK 465 LYS A 36 REMARK 465 GLY A 37 REMARK 465 THR A 38 REMARK 465 ILE A 39 REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 465 ARG A 42 REMARK 465 GLU A 43 REMARK 465 GLN A 44 REMARK 465 PRO A 45 REMARK 465 GLN A 46 REMARK 465 ASN A 47 REMARK 465 PHE A 48 REMARK 465 ALA A 179 REMARK 465 ASP A 180 REMARK 465 SER A 181 REMARK 465 GLU A 182 REMARK 465 VAL A 183 REMARK 465 ASP A 184 REMARK 465 LEU A 185 REMARK 465 TYR A 186 REMARK 465 GLU A 187 REMARK 465 GLU A 188 REMARK 465 LYS A 189 REMARK 465 PRO A 190 REMARK 465 SER A 191 REMARK 465 GLY A 192 REMARK 465 SER A 193 REMARK 465 TYR A 194 REMARK 465 GLN A 195 REMARK 465 LEU A 196 REMARK 465 ASP A 197 REMARK 465 ASP A 198 REMARK 465 GLY A 199 REMARK 465 GLU A 200 REMARK 465 LEU A 201 REMARK 465 GLY B 0 REMARK 465 TYR B 35 REMARK 465 LYS B 36 REMARK 465 GLY B 37 REMARK 465 THR B 38 REMARK 465 ILE B 39 REMARK 465 GLU B 40 REMARK 465 GLU B 41 REMARK 465 ARG B 42 REMARK 465 GLU B 43 REMARK 465 GLN B 44 REMARK 465 PRO B 45 REMARK 465 GLN B 46 REMARK 465 ASN B 47 REMARK 465 PHE B 48 REMARK 465 ASP B 180 REMARK 465 SER B 181 REMARK 465 GLU B 182 REMARK 465 VAL B 183 REMARK 465 ASP B 184 REMARK 465 LEU B 185 REMARK 465 TYR B 186 REMARK 465 GLU B 187 REMARK 465 GLU B 188 REMARK 465 LYS B 189 REMARK 465 PRO B 190 REMARK 465 SER B 191 REMARK 465 GLY B 192 REMARK 465 SER B 193 REMARK 465 TYR B 194 REMARK 465 GLN B 195 REMARK 465 LEU B 196 REMARK 465 ASP B 197 REMARK 465 ASP B 198 REMARK 465 GLY B 199 REMARK 465 GLU B 200 REMARK 465 LEU B 201 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 LYS B 223 CG CD CE NZ REMARK 470 TYR B 226 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 267 CA - CB - CG ANGL. DEV. = -16.0 DEGREES REMARK 500 MSE A 267 CG - SE - CE ANGL. DEV. = 19.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 175 74.45 -150.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-418393 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 35-285) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4PW1 A 35 285 UNP A7VV57 A7VV57_9CLOT 35 285 DBREF 4PW1 B 35 285 UNP A7VV57 A7VV57_9CLOT 35 285 SEQADV 4PW1 GLY A 0 UNP A7VV57 EXPRESSION TAG SEQADV 4PW1 GLY B 0 UNP A7VV57 EXPRESSION TAG SEQRES 1 A 252 GLY TYR LYS GLY THR ILE GLU GLU ARG GLU GLN PRO GLN SEQRES 2 A 252 ASN PHE ASN LEU LEU TYR LEU ASN SER GLY GLU GLU LEU SEQRES 3 A 252 ASN LEU TYR PRO TRP ASN LEU TYR THR GLY GLN GLU GLN SEQRES 4 A 252 GLU LEU PHE GLU GLU GLU ILE VAL SER PHE ALA ALA ASN SEQRES 5 A 252 SER VAL ARG ILE LEU GLY GLY GLY SER TRP THR ASP GLU SEQRES 6 A 252 GLU LEU TYR PRO LEU ILE LYS PHE ARG TYR SER GLY GLN SEQRES 7 A 252 ASP LEU ARG PHE LEU LYS ASP MSE ALA LEU THR GLU LYS SEQRES 8 A 252 ASP GLY ARG ARG TYR LEU VAL ASN MSE ALA LEU ASP PRO SEQRES 9 A 252 ASN GLY LEU CYS TYR PHE SER TYR VAL ASN GLN ASP GLU SEQRES 10 A 252 ARG GLU ALA THR ALA ASP GLU MSE ASP GLN ALA LEU GLY SEQRES 11 A 252 LYS LEU GLN GLU ASP TRP GLU LYS PHE LEU SER ASP PRO SEQRES 12 A 252 LEU PRO ALA ASP SER GLU VAL ASP LEU TYR GLU GLU LYS SEQRES 13 A 252 PRO SER GLY SER TYR GLN LEU ASP ASP GLY GLU LEU LYS SEQRES 14 A 252 THR ASP ASN ALA PHE TYR MSE PHE PHE MSE ARG CYS GLN SEQRES 15 A 252 MSE LEU SER ASP GLN MSE ARG LYS GLU GLN TYR SER ASP SEQRES 16 A 252 TYR ILE GLY ASP ASN LEU TYR THR ILE TRP GLU LEU VAL SEQRES 17 A 252 LEU LYS SER GLU PHE THR SER LEU SER TYR ASP ASN HIS SEQRES 18 A 252 ILE TYR ALA MSE TYR SER ASN ASP GLY GLY THR SER MSE SEQRES 19 A 252 VAL LEU ILE TYR SER PRO ILE GLU GLU ARG PHE VAL GLY SEQRES 20 A 252 PHE SER LEU LYS TYR SEQRES 1 B 252 GLY TYR LYS GLY THR ILE GLU GLU ARG GLU GLN PRO GLN SEQRES 2 B 252 ASN PHE ASN LEU LEU TYR LEU ASN SER GLY GLU GLU LEU SEQRES 3 B 252 ASN LEU TYR PRO TRP ASN LEU TYR THR GLY GLN GLU GLN SEQRES 4 B 252 GLU LEU PHE GLU GLU GLU ILE VAL SER PHE ALA ALA ASN SEQRES 5 B 252 SER VAL ARG ILE LEU GLY GLY GLY SER TRP THR ASP GLU SEQRES 6 B 252 GLU LEU TYR PRO LEU ILE LYS PHE ARG TYR SER GLY GLN SEQRES 7 B 252 ASP LEU ARG PHE LEU LYS ASP MSE ALA LEU THR GLU LYS SEQRES 8 B 252 ASP GLY ARG ARG TYR LEU VAL ASN MSE ALA LEU ASP PRO SEQRES 9 B 252 ASN GLY LEU CYS TYR PHE SER TYR VAL ASN GLN ASP GLU SEQRES 10 B 252 ARG GLU ALA THR ALA ASP GLU MSE ASP GLN ALA LEU GLY SEQRES 11 B 252 LYS LEU GLN GLU ASP TRP GLU LYS PHE LEU SER ASP PRO SEQRES 12 B 252 LEU PRO ALA ASP SER GLU VAL ASP LEU TYR GLU GLU LYS SEQRES 13 B 252 PRO SER GLY SER TYR GLN LEU ASP ASP GLY GLU LEU LYS SEQRES 14 B 252 THR ASP ASN ALA PHE TYR MSE PHE PHE MSE ARG CYS GLN SEQRES 15 B 252 MSE LEU SER ASP GLN MSE ARG LYS GLU GLN TYR SER ASP SEQRES 16 B 252 TYR ILE GLY ASP ASN LEU TYR THR ILE TRP GLU LEU VAL SEQRES 17 B 252 LEU LYS SER GLU PHE THR SER LEU SER TYR ASP ASN HIS SEQRES 18 B 252 ILE TYR ALA MSE TYR SER ASN ASP GLY GLY THR SER MSE SEQRES 19 B 252 VAL LEU ILE TYR SER PRO ILE GLU GLU ARG PHE VAL GLY SEQRES 20 B 252 PHE SER LEU LYS TYR MODRES 4PW1 MSE A 119 MET SELENOMETHIONINE MODRES 4PW1 MSE A 133 MET SELENOMETHIONINE MODRES 4PW1 MSE A 158 MET SELENOMETHIONINE MODRES 4PW1 MSE A 209 MET SELENOMETHIONINE MODRES 4PW1 MSE A 212 MET SELENOMETHIONINE MODRES 4PW1 MSE A 216 MET SELENOMETHIONINE MODRES 4PW1 MSE A 221 MET SELENOMETHIONINE MODRES 4PW1 MSE A 258 MET SELENOMETHIONINE MODRES 4PW1 MSE A 267 MET SELENOMETHIONINE MODRES 4PW1 MSE B 119 MET SELENOMETHIONINE MODRES 4PW1 MSE B 133 MET SELENOMETHIONINE MODRES 4PW1 MSE B 158 MET SELENOMETHIONINE MODRES 4PW1 MSE B 209 MET SELENOMETHIONINE MODRES 4PW1 MSE B 212 MET SELENOMETHIONINE MODRES 4PW1 MSE B 216 MET SELENOMETHIONINE MODRES 4PW1 MSE B 221 MET SELENOMETHIONINE MODRES 4PW1 MSE B 258 MET SELENOMETHIONINE MODRES 4PW1 MSE B 267 MET SELENOMETHIONINE HET MSE A 119 8 HET MSE A 133 8 HET MSE A 158 8 HET MSE A 209 8 HET MSE A 212 8 HET MSE A 216 8 HET MSE A 221 13 HET MSE A 258 8 HET MSE A 267 8 HET MSE B 119 8 HET MSE B 133 8 HET MSE B 158 8 HET MSE B 209 8 HET MSE B 212 8 HET MSE B 216 8 HET MSE B 221 8 HET MSE B 258 8 HET MSE B 267 8 HET GOL A 301 6 HET GOL B 301 6 HET GOL B 302 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *229(H2 O) HELIX 1 1 PRO A 63 TYR A 67 5 5 HELIX 2 2 GLU A 76 LEU A 90 1 15 HELIX 3 3 THR A 96 TYR A 101 1 6 HELIX 4 4 PRO A 102 ILE A 104 5 3 HELIX 5 5 THR A 154 ASP A 175 1 22 HELIX 6 6 ASN A 205 GLU A 224 1 20 HELIX 7 7 ILE A 230 SER A 244 1 15 HELIX 8 8 PRO B 63 TYR B 67 5 5 HELIX 9 9 GLU B 76 LEU B 90 1 15 HELIX 10 10 THR B 96 TYR B 101 1 6 HELIX 11 11 PRO B 102 ILE B 104 5 3 HELIX 12 12 THR B 154 ASP B 175 1 22 HELIX 13 13 ASN B 205 GLU B 224 1 20 HELIX 14 14 ILE B 230 ASP B 232 5 3 HELIX 15 15 ASN B 233 SER B 244 1 12 SHEET 1 A 2 GLU A 57 LEU A 61 0 SHEET 2 A 2 GLU B 57 LEU B 61 -1 O GLU B 58 N ASN A 60 SHEET 1 B 9 GLN A 72 GLU A 73 0 SHEET 2 B 9 ARG A 107 SER A 109 -1 O TYR A 108 N GLN A 72 SHEET 3 B 9 LEU A 113 THR A 122 -1 O LEU A 113 N SER A 109 SHEET 4 B 9 ARG A 128 ASP A 136 -1 O TYR A 129 N LEU A 121 SHEET 5 B 9 GLY A 139 ASN A 147 -1 O VAL A 146 N LEU A 130 SHEET 6 B 9 ARG A 277 LYS A 284 -1 O LEU A 283 N CYS A 141 SHEET 7 B 9 SER A 266 SER A 272 -1 N ILE A 270 O VAL A 279 SHEET 8 B 9 HIS A 254 SER A 260 -1 N ILE A 255 O TYR A 271 SHEET 9 B 9 THR A 247 TYR A 251 -1 N LEU A 249 O TYR A 256 SHEET 1 C 9 GLN B 72 GLU B 73 0 SHEET 2 C 9 ARG B 107 SER B 109 -1 O TYR B 108 N GLN B 72 SHEET 3 C 9 LEU B 113 THR B 122 -1 O PHE B 115 N ARG B 107 SHEET 4 C 9 ARG B 128 ASP B 136 -1 O TYR B 129 N LEU B 121 SHEET 5 C 9 GLY B 139 ASN B 147 -1 O VAL B 146 N LEU B 130 SHEET 6 C 9 ARG B 277 LYS B 284 -1 O LEU B 283 N CYS B 141 SHEET 7 C 9 SER B 266 SER B 272 -1 N ILE B 270 O VAL B 279 SHEET 8 C 9 HIS B 254 SER B 260 -1 N ILE B 255 O TYR B 271 SHEET 9 C 9 THR B 247 TYR B 251 -1 N LEU B 249 O TYR B 256 LINK C ASP A 118 N MSE A 119 1555 1555 1.34 LINK C MSE A 119 N ALA A 120 1555 1555 1.34 LINK C ASN A 132 N MSE A 133 1555 1555 1.33 LINK C MSE A 133 N ALA A 134 1555 1555 1.32 LINK C GLU A 157 N MSE A 158 1555 1555 1.34 LINK C MSE A 158 N ASP A 159 1555 1555 1.33 LINK C TYR A 208 N MSE A 209 1555 1555 1.33 LINK C MSE A 209 N PHE A 210 1555 1555 1.33 LINK C PHE A 211 N MSE A 212 1555 1555 1.31 LINK C MSE A 212 N ARG A 213 1555 1555 1.34 LINK C GLN A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N LEU A 217 1555 1555 1.33 LINK C GLN A 220 N MSE A 221 1555 1555 1.34 LINK C MSE A 221 N ARG A 222 1555 1555 1.32 LINK C ALA A 257 N MSE A 258 1555 1555 1.32 LINK C MSE A 258 N TYR A 259 1555 1555 1.32 LINK C SER A 266 N MSE A 267 1555 1555 1.32 LINK C MSE A 267 N VAL A 268 1555 1555 1.33 LINK C ASP B 118 N MSE B 119 1555 1555 1.34 LINK C MSE B 119 N ALA B 120 1555 1555 1.34 LINK C ASN B 132 N MSE B 133 1555 1555 1.33 LINK C MSE B 133 N ALA B 134 1555 1555 1.32 LINK C GLU B 157 N MSE B 158 1555 1555 1.34 LINK C MSE B 158 N ASP B 159 1555 1555 1.33 LINK C TYR B 208 N MSE B 209 1555 1555 1.34 LINK C MSE B 209 N PHE B 210 1555 1555 1.33 LINK C PHE B 211 N MSE B 212 1555 1555 1.32 LINK C MSE B 212 N ARG B 213 1555 1555 1.34 LINK C GLN B 215 N MSE B 216 1555 1555 1.34 LINK C MSE B 216 N LEU B 217 1555 1555 1.34 LINK C GLN B 220 N MSE B 221 1555 1555 1.35 LINK C MSE B 221 N ARG B 222 1555 1555 1.33 LINK C ALA B 257 N MSE B 258 1555 1555 1.32 LINK C MSE B 258 N TYR B 259 1555 1555 1.31 LINK C SER B 266 N MSE B 267 1555 1555 1.32 LINK C MSE B 267 N VAL B 268 1555 1555 1.33 CISPEP 1 TYR A 62 PRO A 63 0 1.93 CISPEP 2 TYR B 62 PRO B 63 0 4.13 SITE 1 AC1 7 ASP A 136 PRO A 137 GLY A 139 TYR A 229 SITE 2 AC1 7 HOH A 413 HOH A 467 HOH A 510 SITE 1 AC2 7 ARG B 114 ASP B 136 GLY B 139 TYR B 229 SITE 2 AC2 7 HOH B 411 HOH B 446 HOH B 516 SITE 1 AC3 2 LEU B 121 THR B 122 CRYST1 72.101 72.101 214.255 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013870 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004667 0.00000