HEADER OXIDOREDUCTASE 24-MAR-14 4PXN
TITLE STRUCTURE OF ZM ALDH7 IN COMPLEX WITH NAD
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN;
COMPND 3 CHAIN: A, B;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS;
SOURCE 3 ORGANISM_COMMON: MAIZE;
SOURCE 4 ORGANISM_TAXID: 4577;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 PLYSS;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCDFDUET
KEYWDS OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.MORERA,A.VIGOUROUX,D.KOPECNY
REVDAT 3 20-SEP-23 4PXN 1 REMARK SEQADV
REVDAT 2 20-MAY-15 4PXN 1 JRNL
REVDAT 1 18-MAR-15 4PXN 0
JRNL AUTH R.KONCITIKOVA,A.VIGOUROUX,M.KOPECNA,T.ANDREE,J.BARTOS,
JRNL AUTH 2 M.SEBELA,S.MORERA,D.KOPECNY
JRNL TITL ROLE AND STRUCTURAL CHARACTERIZATION OF PLANT ALDEHYDE
JRNL TITL 2 DEHYDROGENASES FROM FAMILY 2 AND FAMILY 7.
JRNL REF BIOCHEM.J. V. 468 109 2015
JRNL REFN ISSN 0264-6021
JRNL PMID 25734422
JRNL DOI 10.1042/BJ20150009
REMARK 2
REMARK 2 RESOLUTION. 2.94 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.0
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.84
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 3 NUMBER OF REFLECTIONS : 26124
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.190
REMARK 3 R VALUE (WORKING SET) : 0.188
REMARK 3 FREE R VALUE : 0.217
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1306
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 13
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.06
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2719
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2838
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2583
REMARK 3 BIN R VALUE (WORKING SET) : 0.2813
REMARK 3 BIN FREE R VALUE : 0.3292
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 136
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 7484
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 88
REMARK 3 SOLVENT ATOMS : 8
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 94.25
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.75
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 16.96860
REMARK 3 B22 (A**2) : -11.89200
REMARK 3 B33 (A**2) : -5.07660
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.425
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 7744 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 10526 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 2666 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 178 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 1172 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 7744 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 1046 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 8935 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.008
REMARK 3 BOND ANGLES (DEGREES) : 1.13
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.60
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.97
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|6 - A|503 A|601 - A|601 A|701 - A|704 }
REMARK 3 ORIGIN FOR THE GROUP (A): -60.2146 179.5960 40.9471
REMARK 3 T TENSOR
REMARK 3 T11: -0.3859 T22: -0.4824
REMARK 3 T33: -0.0854 T12: -0.0481
REMARK 3 T13: 0.0272 T23: 0.0218
REMARK 3 L TENSOR
REMARK 3 L11: 1.6327 L22: 1.7045
REMARK 3 L33: 0.8260 L12: -0.6062
REMARK 3 L13: 0.1473 L23: -0.1871
REMARK 3 S TENSOR
REMARK 3 S11: -0.0371 S12: 0.0603 S13: 0.1836
REMARK 3 S21: 0.3214 S22: 0.0323 S23: 0.2720
REMARK 3 S31: -0.0579 S32: -0.1179 S33: 0.0048
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|6 - B|503 B|601 - B|601 B|701 - B|704 }
REMARK 3 ORIGIN FOR THE GROUP (A): -20.655 166.187 28.823
REMARK 3 T TENSOR
REMARK 3 T11: 0.3237 T22: 0.2318
REMARK 3 T33: 0.1532 T12: -0.2418
REMARK 3 T13: -0.0603 T23: 0.2154
REMARK 3 L TENSOR
REMARK 3 L11: 0.9399 L22: 0.1928
REMARK 3 L33: 0.3375 L12: 0.0477
REMARK 3 L13: -0.2703 L23: -0.0564
REMARK 3 S TENSOR
REMARK 3 S11: -0.0174 S12: 0.4689 S13: 0.2659
REMARK 3 S21: -0.0224 S22: 0.1199 S23: 0.1133
REMARK 3 S31: 0.2010 S32: -0.1909 S33: -0.1025
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4PXN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-14.
REMARK 100 THE DEPOSITION ID IS D_1000085347.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-MAY-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SOLEIL
REMARK 200 BEAMLINE : PROXIMA 2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : .98
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XDS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26136
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.940
REMARK 200 RESOLUTION RANGE LOW (A) : 35.600
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 2JG7
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.35
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: MPD AND 0.2 M AMMONIUM PHOSPHATE, PH
REMARK 280 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X,-Y+1/2,Z
REMARK 290 7555 -X+1/2,Y,-Z
REMARK 290 8555 X,-Y,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.61000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.31000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.24500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.31000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.61000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.24500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.61000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.24500
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.31000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.24500
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.61000
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.31000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 21780 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 63880 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 324.98000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 94.31000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -15
REMARK 465 GLY A -14
REMARK 465 SER A -13
REMARK 465 SER A -12
REMARK 465 HIS A -11
REMARK 465 HIS A -10
REMARK 465 HIS A -9
REMARK 465 HIS A -8
REMARK 465 HIS A -7
REMARK 465 HIS A -6
REMARK 465 SER A -5
REMARK 465 GLN A -4
REMARK 465 ASP A -3
REMARK 465 PRO A -2
REMARK 465 ASN A -1
REMARK 465 SER A 0
REMARK 465 MET A 1
REMARK 465 GLY A 2
REMARK 465 ALA A 3
REMARK 465 PHE A 4
REMARK 465 ALA A 5
REMARK 465 GLN A 504
REMARK 465 GLY A 505
REMARK 465 ILE A 506
REMARK 465 ASN A 507
REMARK 465 PHE A 508
REMARK 465 GLY A 509
REMARK 465 MET B -15
REMARK 465 GLY B -14
REMARK 465 SER B -13
REMARK 465 SER B -12
REMARK 465 HIS B -11
REMARK 465 HIS B -10
REMARK 465 HIS B -9
REMARK 465 HIS B -8
REMARK 465 HIS B -7
REMARK 465 HIS B -6
REMARK 465 SER B -5
REMARK 465 GLN B -4
REMARK 465 ASP B -3
REMARK 465 PRO B -2
REMARK 465 ASN B -1
REMARK 465 SER B 0
REMARK 465 MET B 1
REMARK 465 GLY B 2
REMARK 465 ALA B 3
REMARK 465 PHE B 4
REMARK 465 ALA B 5
REMARK 465 GLN B 504
REMARK 465 GLY B 505
REMARK 465 ILE B 506
REMARK 465 ASN B 507
REMARK 465 PHE B 508
REMARK 465 GLY B 509
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 HIS A 9 -152.93 61.73
REMARK 500 GLN A 10 -54.06 13.61
REMARK 500 PRO A 168 1.75 -69.75
REMARK 500 CYS A 169 -25.24 -151.25
REMARK 500 ASN A 271 57.35 -106.25
REMARK 500 GLN A 299 36.76 -99.94
REMARK 500 TYR A 314 -73.74 -32.09
REMARK 500 ASN A 378 59.00 -90.66
REMARK 500 LEU A 425 -77.38 -86.43
REMARK 500 LYS A 470 -114.23 57.02
REMARK 500 ALA A 478 -123.12 58.94
REMARK 500 SER A 480 -129.54 69.60
REMARK 500 HIS B 9 -79.32 88.34
REMARK 500 ALA B 26 130.27 -174.75
REMARK 500 LEU B 111 -51.94 -28.88
REMARK 500 PRO B 168 1.36 -69.82
REMARK 500 CYS B 169 -24.89 -151.07
REMARK 500 ASN B 271 53.31 -116.69
REMARK 500 GLN B 299 36.54 -99.84
REMARK 500 TYR B 314 -73.66 -32.03
REMARK 500 GLU B 374 98.72 -68.55
REMARK 500 GLU B 396 -168.46 -72.44
REMARK 500 LEU B 425 -72.02 -88.77
REMARK 500 LYS B 470 -114.52 57.15
REMARK 500 ALA B 478 -122.89 58.66
REMARK 500 SER B 480 -129.58 70.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 601
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4PXL RELATED DB: PDB
REMARK 900 RELATED ID: 4PZ2 RELATED DB: PDB
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 THE CORRECT SEQUENCE HAS BEEN DEPOSITED IN GENBANK, KJ004513. THE
REMARK 999 SEQUENCE COMES FROM A CULTIVAR WHICH IS DIFFERENT FROM THAT WHICH
REMARK 999 HAS GIVEN THE SEQUENCE IN THE DATABASE
DBREF 4PXN A 1 509 UNP C0PHD8 C0PHD8_MAIZE 1 509
DBREF 4PXN B 1 509 UNP C0PHD8 C0PHD8_MAIZE 1 509
SEQADV 4PXN MET A -15 UNP C0PHD8 INITIATING METHIONINE
SEQADV 4PXN GLY A -14 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN SER A -13 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN SER A -12 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN HIS A -11 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN HIS A -10 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN HIS A -9 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN HIS A -8 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN HIS A -7 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN HIS A -6 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN SER A -5 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN GLN A -4 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN ASP A -3 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN PRO A -2 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN ASN A -1 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN SER A 0 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN THR A 410 UNP C0PHD8 SER 410 SEE REMARK 999
SEQADV 4PXN MET B -15 UNP C0PHD8 INITIATING METHIONINE
SEQADV 4PXN GLY B -14 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN SER B -13 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN SER B -12 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN HIS B -11 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN HIS B -10 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN HIS B -9 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN HIS B -8 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN HIS B -7 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN HIS B -6 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN SER B -5 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN GLN B -4 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN ASP B -3 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN PRO B -2 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN ASN B -1 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN SER B 0 UNP C0PHD8 EXPRESSION TAG
SEQADV 4PXN THR B 410 UNP C0PHD8 SER 410 SEE REMARK 999
SEQRES 1 A 525 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP
SEQRES 2 A 525 PRO ASN SER MET GLY ALA PHE ALA LYS GLU GLU HIS GLN
SEQRES 3 A 525 PHE LEU ALA GLU LEU GLY LEU ALA GLN ARG ASN PRO GLY
SEQRES 4 A 525 ALA PHE ALA CYS GLY ALA TRP GLY GLY SER GLY PRO THR
SEQRES 5 A 525 VAL THR SER THR SER PRO THR ASN ASN GLN VAL ILE ALA
SEQRES 6 A 525 GLU VAL VAL GLU ALA SER VAL HIS ASP TYR GLU GLU GLY
SEQRES 7 A 525 MET ARG ALA CYS PHE ASP ALA ALA LYS THR TRP MET ALA
SEQRES 8 A 525 ILE PRO ALA PRO LYS ARG GLY GLU ILE VAL ARG GLN ILE
SEQRES 9 A 525 GLY ASP ALA LEU ARG ALA LYS LEU HIS HIS LEU GLY ARG
SEQRES 10 A 525 LEU VAL SER LEU GLU MET GLY LYS ILE LEU PRO GLU GLY
SEQRES 11 A 525 ILE GLY GLU VAL GLN GLU ILE ILE ASP MET CYS ASP TYR
SEQRES 12 A 525 ALA VAL GLY LEU SER ARG GLN LEU ASN GLY SER ILE ILE
SEQRES 13 A 525 PRO SER GLU ARG PRO ASN HIS MET MET MET GLU VAL TRP
SEQRES 14 A 525 ASN PRO LEU GLY VAL VAL GLY VAL ILE THR ALA PHE ASN
SEQRES 15 A 525 PHE PRO CYS ALA VAL LEU GLY TRP ASN ALA CYS ILE ALA
SEQRES 16 A 525 LEU VAL CYS GLY ASN CYS VAL VAL TRP LYS GLY ALA PRO
SEQRES 17 A 525 THR THR PRO LEU ILE THR ILE ALA MET THR LYS ILE VAL
SEQRES 18 A 525 ALA SER VAL LEU GLU LYS ASN ASN LEU PRO GLY ALA ILE
SEQRES 19 A 525 PHE THR SER PHE CYS GLY GLY THR GLU ILE GLY GLN ALA
SEQRES 20 A 525 ILE ALA LEU ASP ILE ARG ILE PRO LEU VAL SER PHE THR
SEQRES 21 A 525 GLY SER THR ARG ALA GLY LEU MET VAL GLN GLN GLN VAL
SEQRES 22 A 525 SER ALA ARG PHE GLY LYS CYS LEU LEU GLU LEU SER GLY
SEQRES 23 A 525 ASN ASN ALA ILE ILE VAL MET ASP ASP ALA ASP ILE GLN
SEQRES 24 A 525 LEU ALA VAL ARG SER VAL LEU PHE ALA ALA VAL GLY THR
SEQRES 25 A 525 ALA GLY GLN ARG CYS THR THR CYS ARG ARG LEU ILE LEU
SEQRES 26 A 525 HIS GLU ASN ILE TYR GLN THR PHE LEU ASP GLN LEU VAL
SEQRES 27 A 525 GLU VAL TYR LYS GLN VAL ARG ILE GLY ASP PRO LEU GLU
SEQRES 28 A 525 LYS GLY THR LEU LEU GLY PRO LEU HIS THR PRO ALA SER
SEQRES 29 A 525 LYS GLU ASN PHE LEU LYS GLY ILE GLN THR ILE LYS SER
SEQRES 30 A 525 GLN GLY GLY LYS ILE LEU PHE GLY GLY SER ALA ILE GLU
SEQRES 31 A 525 SER GLU GLY ASN PHE VAL GLN PRO THR ILE VAL GLU ILE
SEQRES 32 A 525 THR PRO SER ALA PRO VAL VAL LYS GLU GLU LEU PHE GLY
SEQRES 33 A 525 PRO VAL LEU TYR VAL MET LYS PHE GLN THR LEU LYS GLU
SEQRES 34 A 525 ALA ILE GLU ILE ASN ASN SER VAL PRO GLN GLY LEU SER
SEQRES 35 A 525 SER SER ILE PHE THR LYS ARG PRO ASP ILE ILE PHE LYS
SEQRES 36 A 525 TRP LEU GLY PRO HIS GLY SER ASP CYS GLY ILE VAL ASN
SEQRES 37 A 525 VAL ASN ILE PRO THR ASN GLY ALA GLU ILE GLY GLY ALA
SEQRES 38 A 525 PHE GLY GLY GLU LYS ALA THR GLY GLY GLY ARG GLU ALA
SEQRES 39 A 525 GLY SER ASP SER TRP LYS GLN TYR MET ARG ARG ALA THR
SEQRES 40 A 525 CYS THR ILE ASN TYR GLY SER GLU LEU PRO LEU ALA GLN
SEQRES 41 A 525 GLY ILE ASN PHE GLY
SEQRES 1 B 525 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP
SEQRES 2 B 525 PRO ASN SER MET GLY ALA PHE ALA LYS GLU GLU HIS GLN
SEQRES 3 B 525 PHE LEU ALA GLU LEU GLY LEU ALA GLN ARG ASN PRO GLY
SEQRES 4 B 525 ALA PHE ALA CYS GLY ALA TRP GLY GLY SER GLY PRO THR
SEQRES 5 B 525 VAL THR SER THR SER PRO THR ASN ASN GLN VAL ILE ALA
SEQRES 6 B 525 GLU VAL VAL GLU ALA SER VAL HIS ASP TYR GLU GLU GLY
SEQRES 7 B 525 MET ARG ALA CYS PHE ASP ALA ALA LYS THR TRP MET ALA
SEQRES 8 B 525 ILE PRO ALA PRO LYS ARG GLY GLU ILE VAL ARG GLN ILE
SEQRES 9 B 525 GLY ASP ALA LEU ARG ALA LYS LEU HIS HIS LEU GLY ARG
SEQRES 10 B 525 LEU VAL SER LEU GLU MET GLY LYS ILE LEU PRO GLU GLY
SEQRES 11 B 525 ILE GLY GLU VAL GLN GLU ILE ILE ASP MET CYS ASP TYR
SEQRES 12 B 525 ALA VAL GLY LEU SER ARG GLN LEU ASN GLY SER ILE ILE
SEQRES 13 B 525 PRO SER GLU ARG PRO ASN HIS MET MET MET GLU VAL TRP
SEQRES 14 B 525 ASN PRO LEU GLY VAL VAL GLY VAL ILE THR ALA PHE ASN
SEQRES 15 B 525 PHE PRO CYS ALA VAL LEU GLY TRP ASN ALA CYS ILE ALA
SEQRES 16 B 525 LEU VAL CYS GLY ASN CYS VAL VAL TRP LYS GLY ALA PRO
SEQRES 17 B 525 THR THR PRO LEU ILE THR ILE ALA MET THR LYS ILE VAL
SEQRES 18 B 525 ALA SER VAL LEU GLU LYS ASN ASN LEU PRO GLY ALA ILE
SEQRES 19 B 525 PHE THR SER PHE CYS GLY GLY THR GLU ILE GLY GLN ALA
SEQRES 20 B 525 ILE ALA LEU ASP ILE ARG ILE PRO LEU VAL SER PHE THR
SEQRES 21 B 525 GLY SER THR ARG ALA GLY LEU MET VAL GLN GLN GLN VAL
SEQRES 22 B 525 SER ALA ARG PHE GLY LYS CYS LEU LEU GLU LEU SER GLY
SEQRES 23 B 525 ASN ASN ALA ILE ILE VAL MET ASP ASP ALA ASP ILE GLN
SEQRES 24 B 525 LEU ALA VAL ARG SER VAL LEU PHE ALA ALA VAL GLY THR
SEQRES 25 B 525 ALA GLY GLN ARG CYS THR THR CYS ARG ARG LEU ILE LEU
SEQRES 26 B 525 HIS GLU ASN ILE TYR GLN THR PHE LEU ASP GLN LEU VAL
SEQRES 27 B 525 GLU VAL TYR LYS GLN VAL ARG ILE GLY ASP PRO LEU GLU
SEQRES 28 B 525 LYS GLY THR LEU LEU GLY PRO LEU HIS THR PRO ALA SER
SEQRES 29 B 525 LYS GLU ASN PHE LEU LYS GLY ILE GLN THR ILE LYS SER
SEQRES 30 B 525 GLN GLY GLY LYS ILE LEU PHE GLY GLY SER ALA ILE GLU
SEQRES 31 B 525 SER GLU GLY ASN PHE VAL GLN PRO THR ILE VAL GLU ILE
SEQRES 32 B 525 THR PRO SER ALA PRO VAL VAL LYS GLU GLU LEU PHE GLY
SEQRES 33 B 525 PRO VAL LEU TYR VAL MET LYS PHE GLN THR LEU LYS GLU
SEQRES 34 B 525 ALA ILE GLU ILE ASN ASN SER VAL PRO GLN GLY LEU SER
SEQRES 35 B 525 SER SER ILE PHE THR LYS ARG PRO ASP ILE ILE PHE LYS
SEQRES 36 B 525 TRP LEU GLY PRO HIS GLY SER ASP CYS GLY ILE VAL ASN
SEQRES 37 B 525 VAL ASN ILE PRO THR ASN GLY ALA GLU ILE GLY GLY ALA
SEQRES 38 B 525 PHE GLY GLY GLU LYS ALA THR GLY GLY GLY ARG GLU ALA
SEQRES 39 B 525 GLY SER ASP SER TRP LYS GLN TYR MET ARG ARG ALA THR
SEQRES 40 B 525 CYS THR ILE ASN TYR GLY SER GLU LEU PRO LEU ALA GLN
SEQRES 41 B 525 GLY ILE ASN PHE GLY
HET NAD A 601 44
HET NAD B 601 44
HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE
FORMUL 3 NAD 2(C21 H27 N7 O14 P2)
FORMUL 5 HOH *8(H2 O)
HELIX 1 1 LEU A 12 GLY A 16 5 5
HELIX 2 2 SER A 55 ALA A 75 1 21
HELIX 3 3 PRO A 77 LYS A 95 1 19
HELIX 4 4 LYS A 95 GLY A 108 1 14
HELIX 5 5 LEU A 111 ARG A 133 1 23
HELIX 6 6 CYS A 169 CYS A 182 1 14
HELIX 7 7 THR A 194 ASN A 212 1 19
HELIX 8 8 PRO A 215 ALA A 217 5 3
HELIX 9 9 GLY A 225 ASP A 235 1 11
HELIX 10 10 SER A 246 ARG A 260 1 15
HELIX 11 11 ASP A 281 GLY A 295 1 15
HELIX 12 12 THR A 296 GLN A 299 5 4
HELIX 13 13 ILE A 313 LYS A 326 1 14
HELIX 14 14 THR A 345 GLN A 362 1 18
HELIX 15 15 ALA A 391 GLU A 396 5 6
HELIX 16 16 THR A 410 VAL A 421 1 12
HELIX 17 17 ARG A 433 LEU A 441 1 9
HELIX 18 18 ASP A 481 GLN A 485 5 5
HELIX 19 19 HIS B 9 LEU B 15 1 7
HELIX 20 20 SER B 55 ALA B 75 1 21
HELIX 21 21 PRO B 77 LYS B 95 1 19
HELIX 22 22 LYS B 95 GLY B 108 1 14
HELIX 23 23 LEU B 111 ARG B 133 1 23
HELIX 24 24 CYS B 169 CYS B 182 1 14
HELIX 25 25 THR B 194 ASN B 212 1 19
HELIX 26 26 PRO B 215 ALA B 217 5 3
HELIX 27 27 GLY B 225 ASP B 235 1 11
HELIX 28 28 SER B 246 ARG B 260 1 15
HELIX 29 29 ASP B 281 GLY B 295 1 15
HELIX 30 30 THR B 296 GLN B 299 5 4
HELIX 31 31 ILE B 313 LYS B 326 1 14
HELIX 32 32 THR B 345 GLN B 362 1 18
HELIX 33 33 ALA B 391 GLU B 396 1 6
HELIX 34 34 THR B 410 VAL B 421 1 12
HELIX 35 35 ARG B 433 LEU B 441 1 9
HELIX 36 36 ASP B 481 GLN B 485 5 5
SHEET 1 A 3 ARG A 20 PRO A 22 0
SHEET 2 A 3 VAL A 47 VAL A 52 1 O VAL A 52 N ASN A 21
SHEET 3 A 3 THR A 36 THR A 40 -1 N SER A 39 O ILE A 48
SHEET 1 B 7 ALA A 29 GLY A 31 0
SHEET 2 B 7 ALA A 24 ALA A 26 -1 N ALA A 24 O GLY A 31
SHEET 3 B 7 PHE A 219 PHE A 222 -1 O SER A 221 N PHE A 25
SHEET 4 B 7 CYS A 185 LYS A 189 1 N TRP A 188 O PHE A 222
SHEET 5 B 7 VAL A 158 ILE A 162 1 N VAL A 159 O CYS A 185
SHEET 6 B 7 LEU A 240 THR A 244 1 O SER A 242 N GLY A 160
SHEET 7 B 7 LYS A 263 GLU A 267 1 O LEU A 265 N PHE A 243
SHEET 1 C 3 SER A 138 ILE A 140 0
SHEET 2 C 3 HIS A 147 PRO A 155 -1 O GLU A 151 N SER A 138
SHEET 3 C 3 MET A 487 ASN A 495 -1 O CYS A 492 N MET A 150
SHEET 1 D 7 LYS A 365 PHE A 368 0
SHEET 2 D 7 THR A 383 GLU A 386 -1 O GLU A 386 N LYS A 365
SHEET 3 D 7 VAL A 402 PHE A 408 1 O VAL A 405 N VAL A 385
SHEET 4 D 7 CYS A 304 HIS A 310 1 N LEU A 307 O TYR A 404
SHEET 5 D 7 ASN A 272 VAL A 276 1 N ILE A 274 O ILE A 308
SHEET 6 D 7 SER A 426 PHE A 430 1 O SER A 428 N ILE A 275
SHEET 7 D 7 ILE A 450 VAL A 453 1 O ASN A 452 N SER A 427
SHEET 1 E 2 GLN A 423 GLY A 424 0
SHEET 2 E 2 GLU A 469 LYS A 470 -1 O GLU A 469 N GLY A 424
SHEET 1 F 2 ALA A 465 PHE A 466 0
SHEET 2 F 2 GLU A 477 ALA A 478 -1 O GLU A 477 N PHE A 466
SHEET 1 G 3 ARG B 20 PRO B 22 0
SHEET 2 G 3 VAL B 47 VAL B 52 1 O VAL B 52 N ASN B 21
SHEET 3 G 3 THR B 36 THR B 40 -1 N SER B 39 O ILE B 48
SHEET 1 H 7 TRP B 30 GLY B 31 0
SHEET 2 H 7 ALA B 24 PHE B 25 -1 N ALA B 24 O GLY B 31
SHEET 3 H 7 PHE B 219 PHE B 222 -1 O SER B 221 N PHE B 25
SHEET 4 H 7 CYS B 185 LYS B 189 1 N TRP B 188 O PHE B 222
SHEET 5 H 7 VAL B 158 ILE B 162 1 N VAL B 159 O CYS B 185
SHEET 6 H 7 LEU B 240 THR B 244 1 O SER B 242 N GLY B 160
SHEET 7 H 7 LYS B 263 GLU B 267 1 O LEU B 265 N PHE B 243
SHEET 1 I 3 SER B 138 ILE B 140 0
SHEET 2 I 3 HIS B 147 PRO B 155 -1 O GLU B 151 N SER B 138
SHEET 3 I 3 MET B 487 ASN B 495 -1 O CYS B 492 N MET B 150
SHEET 1 J 7 LYS B 365 PHE B 368 0
SHEET 2 J 7 THR B 383 GLU B 386 -1 O GLU B 386 N LYS B 365
SHEET 3 J 7 VAL B 402 PHE B 408 1 O VAL B 405 N VAL B 385
SHEET 4 J 7 CYS B 304 HIS B 310 1 N LEU B 307 O TYR B 404
SHEET 5 J 7 ASN B 272 VAL B 276 1 N ILE B 274 O ILE B 308
SHEET 6 J 7 SER B 426 PHE B 430 1 O SER B 428 N ILE B 275
SHEET 7 J 7 ILE B 450 VAL B 453 1 O ASN B 452 N SER B 427
SHEET 1 K 2 GLN B 423 GLY B 424 0
SHEET 2 K 2 GLU B 469 LYS B 470 -1 O GLU B 469 N GLY B 424
SHEET 1 L 2 ALA B 465 PHE B 466 0
SHEET 2 L 2 GLU B 477 ALA B 478 -1 O GLU B 477 N PHE B 466
CISPEP 1 GLU A 7 GLU A 8 0 2.34
CISPEP 2 GLU A 8 HIS A 9 0 6.90
CISPEP 3 GLU B 7 GLU B 8 0 1.49
CISPEP 4 GLU B 8 HIS B 9 0 -1.07
CISPEP 5 ALA B 26 CYS B 27 0 5.05
SITE 1 AC1 26 ILE A 162 THR A 163 ALA A 164 PHE A 165
SITE 2 AC1 26 ASN A 166 LYS A 189 GLY A 190 ALA A 191
SITE 3 AC1 26 PRO A 192 THR A 226 GLY A 229 GLN A 230
SITE 4 AC1 26 PHE A 243 THR A 244 GLY A 245 SER A 246
SITE 5 AC1 26 ALA A 249 MET A 252 VAL A 253 GLU A 267
SITE 6 AC1 26 LEU A 268 SER A 269 CYS A 301 GLU A 397
SITE 7 AC1 26 PHE A 399 PHE A 466
SITE 1 AC2 25 ILE B 162 THR B 163 ALA B 164 PHE B 165
SITE 2 AC2 25 ASN B 166 LYS B 189 GLY B 190 ALA B 191
SITE 3 AC2 25 THR B 226 GLY B 229 GLN B 230 PHE B 243
SITE 4 AC2 25 THR B 244 GLY B 245 SER B 246 ALA B 249
SITE 5 AC2 25 MET B 252 VAL B 253 GLU B 267 LEU B 268
SITE 6 AC2 25 SER B 269 CYS B 301 GLU B 397 PHE B 399
SITE 7 AC2 25 PHE B 466
CRYST1 79.220 162.490 188.620 90.00 90.00 90.00 I 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012623 0.000000 0.000000 0.00000
SCALE2 0.000000 0.006154 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005302 0.00000