HEADER MEMBRANE PROTEIN 25-MAR-14 4PY0 TITLE CRYSTAL STRUCTURE OF P2Y12 RECEPTOR IN COMPLEX WITH 2MESATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: P2Y PURINOCEPTOR 12, SOLUBLE CYTOCHROME B562; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P2Y12, ADP-GLUCOSE RECEPTOR, ADPG-R, P2T(AC), P2Y(AC), COMPND 5 P2Y(CYC), P2Y12 PLATELET ADP RECEPTOR, P2Y(ADP), SP1999, CYTOCHROME COMPND 6 B-562; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: CHIMERA PROTEIN OF N-TERMINAL RESIDUES 2-223 FROM COMPND 10 P2Y12R (P2Y12_HUMAN), SOLUBLE CYTOCHROME B562 (C562_ECOLX), AND C- COMPND 11 TERMINAL RESIDUES 224-342 FROM P2Y12R (P2Y12_HUMAN). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 562; SOURCE 5 GENE: HORK3, P2RY12, CYBC; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIROUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS PURINERGIC RECEPTOR P2Y12, PARTIAL AGONIST-BOUND, G-PROTEIN COUPLED KEYWDS 2 RECEPTOR (GPCR), MEMBRANE PROTEIN, SIGNALING PROTEIN-NUCLEOTIDE KEYWDS 3 COMPLEX, PSI-BIOLOGY, GPCR NETWORK, STRUCTURAL GENOMICS, SIGNALING KEYWDS 4 MEMBRANE PROTEIN, GPCR, PLATELET ACTIVATION, MEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHANG,K.ZHANG,Z.G.GAO,S.PAOLETTA,D.ZHANG,G.W.HAN,T.LI,L.MA,W.ZHANG, AUTHOR 2 C.E.MULLER,H.YANG,H.JIANG,V.CHEREZOV,V.KATRITCH,K.A.JACOBSON, AUTHOR 3 R.C.STEVENS,B.WU,Q.ZHAO,GPCR NETWORK (GPCR) REVDAT 5 08-NOV-23 4PY0 1 REMARK SEQADV REVDAT 4 16-AUG-17 4PY0 1 SOURCE REMARK REVDAT 3 03-SEP-14 4PY0 1 REMARK REVDAT 2 28-MAY-14 4PY0 1 JRNL REVDAT 1 30-APR-14 4PY0 0 JRNL AUTH J.ZHANG,K.ZHANG,Z.G.GAO,S.PAOLETTA,D.ZHANG,G.W.HAN,T.LI, JRNL AUTH 2 L.MA,W.ZHANG,C.E.MULLER,H.YANG,H.JIANG,V.CHEREZOV, JRNL AUTH 3 V.KATRITCH,K.A.JACOBSON,R.C.STEVENS,B.WU,Q.ZHAO JRNL TITL AGONIST-BOUND STRUCTURE OF THE HUMAN P2Y12 RECEPTOR JRNL REF NATURE V. 509 119 2014 JRNL REFN ISSN 0028-0836 JRNL PMID 24784220 JRNL DOI 10.1038/NATURE13288 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 8273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 422 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.47 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.33 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2293 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2277 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2178 REMARK 3 BIN R VALUE (WORKING SET) : 0.2248 REMARK 3 BIN FREE R VALUE : 0.2876 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.02 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 115 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 87.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.89220 REMARK 3 B22 (A**2) : -0.33710 REMARK 3 B33 (A**2) : -2.55520 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.60830 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.653 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.498 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.898 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3190 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4341 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1448 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 56 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 458 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3190 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 447 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3707 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.87 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.68 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.24 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|15 - A|305 } REMARK 3 ORIGIN FOR THE GROUP (A): -13.485 -10.127 -0.115 REMARK 3 T TENSOR REMARK 3 T11: 0.7049 T22: 0.2790 REMARK 3 T33: 0.3761 T12: 0.0947 REMARK 3 T13: -0.1688 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 1.5617 L22: 0.9639 REMARK 3 L33: 0.0491 L12: 0.2137 REMARK 3 L13: 0.3302 L23: -0.2873 REMARK 3 S TENSOR REMARK 3 S11: -0.1393 S12: -0.5087 S13: 0.2083 REMARK 3 S21: 0.5340 S22: -0.1158 S23: -0.3719 REMARK 3 S31: -0.1519 S32: -0.2820 S33: 0.2551 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|1001 - A|1106 } REMARK 3 ORIGIN FOR THE GROUP (A): 17.502 -25.972 -43.415 REMARK 3 T TENSOR REMARK 3 T11: -0.0281 T22: 0.0338 REMARK 3 T33: 0.1848 T12: 0.0543 REMARK 3 T13: 0.1481 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 0.8698 L22: 1.5112 REMARK 3 L33: 7.1701 L12: 0.4498 REMARK 3 L13: 1.6070 L23: 0.9282 REMARK 3 S TENSOR REMARK 3 S11: -0.0584 S12: -0.0124 S13: 0.1509 REMARK 3 S21: 0.4882 S22: -0.2147 S23: -0.2456 REMARK 3 S31: -0.3026 S32: -0.3963 S33: 0.2731 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 6 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8273 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.22200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.92200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4PXZ AND 1M6T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35-40% PEG 400, 0.15-0.20M AMMONIUM REMARK 280 TARTRATE, 4% V/V MPD, 0.1M SODIUM CITRATE, PH 6.0, LIPIDIC CUBIC REMARK 280 PHASE (LCP), TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.82500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.55500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.82500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.55500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -9 REMARK 465 TYR A -8 REMARK 465 LYS A -7 REMARK 465 ASP A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 PRO A 0 REMARK 465 GLN A 2 REMARK 465 ALA A 3 REMARK 465 VAL A 4 REMARK 465 ASP A 5 REMARK 465 ASN A 6 REMARK 465 LEU A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 GLY A 12 REMARK 465 ASN A 13 REMARK 465 THR A 14 REMARK 465 LEU A 87 REMARK 465 GLY A 88 REMARK 465 PRO A 129 REMARK 465 PHE A 130 REMARK 465 LYS A 131 REMARK 465 THR A 132 REMARK 465 SER A 133 REMARK 465 ASN A 134 REMARK 465 ARG A 306 REMARK 465 ASN A 307 REMARK 465 SER A 308 REMARK 465 LEU A 309 REMARK 465 ILE A 310 REMARK 465 SER A 311 REMARK 465 MET A 312 REMARK 465 LEU A 313 REMARK 465 LYS A 314 REMARK 465 CYS A 315 REMARK 465 PRO A 316 REMARK 465 ASN A 317 REMARK 465 SER A 318 REMARK 465 ALA A 319 REMARK 465 THR A 320 REMARK 465 SER A 321 REMARK 465 LEU A 322 REMARK 465 SER A 323 REMARK 465 GLN A 324 REMARK 465 ASP A 325 REMARK 465 ASN A 326 REMARK 465 ARG A 327 REMARK 465 LYS A 328 REMARK 465 LYS A 329 REMARK 465 GLU A 330 REMARK 465 GLN A 331 REMARK 465 ASP A 332 REMARK 465 GLY A 333 REMARK 465 GLY A 334 REMARK 465 ASP A 335 REMARK 465 PRO A 336 REMARK 465 ASN A 337 REMARK 465 GLU A 338 REMARK 465 GLU A 339 REMARK 465 THR A 340 REMARK 465 PRO A 341 REMARK 465 MET A 342 REMARK 465 GLY A 343 REMARK 465 ARG A 344 REMARK 465 PRO A 345 REMARK 465 LEU A 346 REMARK 465 GLU A 347 REMARK 465 VAL A 348 REMARK 465 LEU A 349 REMARK 465 PHE A 350 REMARK 465 GLN A 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 15 OG REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 PRO A 135 CG CD REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 168 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 169 CG OD1 OD2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 ASN A 171 CG OD1 ND2 REMARK 470 GLU A 181 CD OE1 OE2 REMARK 470 ARG A 218 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1015 CG CD CE NZ REMARK 470 GLU A1018 CG CD OE1 OE2 REMARK 470 LYS A1019 CG CD CE NZ REMARK 470 GLN A1025 CG CD OE1 NE2 REMARK 470 LYS A1027 CG CD CE NZ REMARK 470 LEU A1030 CG CD1 CD2 REMARK 470 LYS A1032 CG CD CE NZ REMARK 470 ARG A1034 CG CD NE CZ NH1 NH2 REMARK 470 LEU A1038 CG CD1 CD2 REMARK 470 ASP A1050 CG OD1 OD2 REMARK 470 ASP A1073 CG OD1 OD2 REMARK 470 LEU A1076 CG CD1 CD2 REMARK 470 LYS A1077 CG CD CE NZ REMARK 470 GLN A1103 CG CD OE1 NE2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 LEU A 293 CG CD1 CD2 REMARK 470 TYR A 298 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 CYS A 302 SG REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 PHE A 305 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 99 -73.65 -117.39 REMARK 500 VAL A 172 97.12 -69.09 REMARK 500 THR A1009 32.22 -82.58 REMARK 500 LEU A1010 -35.93 -143.08 REMARK 500 ASP A1050 39.90 -91.94 REMARK 500 LYS A 303 52.00 -99.39 REMARK 500 SER A 304 -34.29 -155.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 1202 REMARK 610 OLC A 1203 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6AT A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NTJ RELATED DB: PDB REMARK 900 RELATED ID: GPCR-87 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4PXZ RELATED DB: PDB DBREF 4PY0 A 2 223 UNP Q9H244 P2Y12_HUMAN 2 223 DBREF 4PY0 A 1001 1106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 4PY0 A 224 342 UNP Q9H244 P2Y12_HUMAN 224 342 SEQADV 4PY0 ASP A -9 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 TYR A -8 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 LYS A -7 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 ASP A -6 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 ASP A -5 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 ASP A -4 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 ASP A -3 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 GLY A -2 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 ALA A -1 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 PRO A 0 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 TRP A 1007 UNP P0ABE7 MET 29 ENGINEERED MUTATION SEQADV 4PY0 ILE A 1102 UNP P0ABE7 HIS 124 ENGINEERED MUTATION SEQADV 4PY0 LEU A 1106 UNP P0ABE7 ARG 128 ENGINEERED MUTATION SEQADV 4PY0 ASN A 294 UNP Q9H244 ASP 294 ENGINEERED MUTATION SEQADV 4PY0 GLY A 343 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 ARG A 344 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 PRO A 345 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 LEU A 346 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 GLU A 347 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 VAL A 348 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 LEU A 349 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 PHE A 350 UNP Q9H244 EXPRESSION TAG SEQADV 4PY0 GLN A 351 UNP Q9H244 EXPRESSION TAG SEQRES 1 A 466 ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO GLN ALA VAL SEQRES 2 A 466 ASP ASN LEU THR SER ALA PRO GLY ASN THR SER LEU CYS SEQRES 3 A 466 THR ARG ASP TYR LYS ILE THR GLN VAL LEU PHE PRO LEU SEQRES 4 A 466 LEU TYR THR VAL LEU PHE PHE VAL GLY LEU ILE THR ASN SEQRES 5 A 466 GLY LEU ALA MET ARG ILE PHE PHE GLN ILE ARG SER LYS SEQRES 6 A 466 SER ASN PHE ILE ILE PHE LEU LYS ASN THR VAL ILE SER SEQRES 7 A 466 ASP LEU LEU MET ILE LEU THR PHE PRO PHE LYS ILE LEU SEQRES 8 A 466 SER ASP ALA LYS LEU GLY THR GLY PRO LEU ARG THR PHE SEQRES 9 A 466 VAL CYS GLN VAL THR SER VAL ILE PHE TYR PHE THR MET SEQRES 10 A 466 TYR ILE SER ILE SER PHE LEU GLY LEU ILE THR ILE ASP SEQRES 11 A 466 ARG TYR GLN LYS THR THR ARG PRO PHE LYS THR SER ASN SEQRES 12 A 466 PRO LYS ASN LEU LEU GLY ALA LYS ILE LEU SER VAL VAL SEQRES 13 A 466 ILE TRP ALA PHE MET PHE LEU LEU SER LEU PRO ASN MET SEQRES 14 A 466 ILE LEU THR ASN ARG GLN PRO ARG ASP LYS ASN VAL LYS SEQRES 15 A 466 LYS CYS SER PHE LEU LYS SER GLU PHE GLY LEU VAL TRP SEQRES 16 A 466 HIS GLU ILE VAL ASN TYR ILE CYS GLN VAL ILE PHE TRP SEQRES 17 A 466 ILE ASN PHE LEU ILE VAL ILE VAL CYS TYR THR LEU ILE SEQRES 18 A 466 THR LYS GLU LEU TYR ARG SER TYR VAL ARG THR ALA ASP SEQRES 19 A 466 LEU GLU ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS SEQRES 20 A 466 VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP SEQRES 21 A 466 ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN SEQRES 22 A 466 LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP SEQRES 23 A 466 SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE SEQRES 24 A 466 LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN SEQRES 25 A 466 GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN SEQRES 26 A 466 LEU LYS THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU SEQRES 27 A 466 ARG GLY VAL GLY LYS VAL PRO ARG LYS LYS VAL ASN VAL SEQRES 28 A 466 LYS VAL PHE ILE ILE ILE ALA VAL PHE PHE ILE CYS PHE SEQRES 29 A 466 VAL PRO PHE HIS PHE ALA ARG ILE PRO TYR THR LEU SER SEQRES 30 A 466 GLN THR ARG ASP VAL PHE ASP CYS THR ALA GLU ASN THR SEQRES 31 A 466 LEU PHE TYR VAL LYS GLU SER THR LEU TRP LEU THR SER SEQRES 32 A 466 LEU ASN ALA CYS LEU ASN PRO PHE ILE TYR PHE PHE LEU SEQRES 33 A 466 CYS LYS SER PHE ARG ASN SER LEU ILE SER MET LEU LYS SEQRES 34 A 466 CYS PRO ASN SER ALA THR SER LEU SER GLN ASP ASN ARG SEQRES 35 A 466 LYS LYS GLU GLN ASP GLY GLY ASP PRO ASN GLU GLU THR SEQRES 36 A 466 PRO MET GLY ARG PRO LEU GLU VAL LEU PHE GLN HET 6AT A1201 33 HET OLC A1202 16 HET OLC A1203 16 HETNAM 6AT 2-(METHYLSULFANYL)ADENOSINE 5'-(TETRAHYDROGEN HETNAM 2 6AT TRIPHOSPHATE) HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN 6AT 2-METHYLTHIO-ADENOSINE-5'-TRIPHOSPHATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 6AT C11 H18 N5 O13 P3 S FORMUL 3 OLC 2(C21 H40 O4) FORMUL 5 HOH *(H2 O) HELIX 1 1 ILE A 23 PHE A 51 1 29 HELIX 2 2 SER A 57 LYS A 86 1 30 HELIX 3 3 GLY A 90 VAL A 99 1 10 HELIX 4 4 VAL A 99 ARG A 128 1 30 HELIX 5 5 LYS A 136 LEU A 162 1 27 HELIX 6 6 LYS A 174 LYS A 179 5 6 HELIX 7 7 SER A 180 ALA A 1020 1 64 HELIX 8 8 ASN A 1022 ALA A 1043 1 22 HELIX 9 9 PRO A 1045 GLU A 1049 5 5 HELIX 10 10 SER A 1055 GLY A 1082 1 28 HELIX 11 11 VAL A 1084 GLU A 1092 1 9 HELIX 12 12 GLN A 1093 LYS A 1095 5 3 HELIX 13 13 THR A 1096 LYS A 228 1 16 HELIX 14 14 ASN A 235 PHE A 249 1 15 HELIX 15 15 PHE A 249 PHE A 254 1 6 HELIX 16 16 ALA A 255 ARG A 265 1 11 HELIX 17 17 ASP A 269 LEU A 289 1 21 HELIX 18 18 ASN A 290 ASN A 294 5 5 HELIX 19 19 PRO A 295 PHE A 300 1 6 SSBOND 1 CYS A 17 CYS A 270 1555 1555 2.04 SSBOND 2 CYS A 97 CYS A 175 1555 1555 2.04 SITE 1 AC1 20 ARG A 93 CYS A 97 SER A 101 VAL A 102 SITE 2 AC1 20 TYR A 105 SER A 156 ASN A 159 LYS A 173 SITE 3 AC1 20 LYS A 174 CYS A 175 SER A 176 LYS A 179 SITE 4 AC1 20 HIS A 187 VAL A 190 ASN A 191 CYS A 194 SITE 5 AC1 20 ARG A 256 TYR A 259 GLN A 263 LYS A 280 SITE 1 AC2 3 THR A 275 TYR A 278 OLC A1203 SITE 1 AC3 7 ASP A 20 ILE A 23 PHE A 28 TYR A 278 SITE 2 AC3 7 SER A 282 TRP A 285 OLC A1202 CRYST1 75.650 65.110 100.740 90.00 95.50 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013219 0.000000 0.001273 0.00000 SCALE2 0.000000 0.015359 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009972 0.00000