HEADER PROTEIN BINDING 26-MAR-14 4PY6
TITLE CRYSTAL STRUCTURE OF BROMODOMAIN OF PFA0510W FROM PLASMODIUM
TITLE 2 FALCIPARUM
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BROMODOMAIN PROTEIN, PUTATIVE;
COMPND 3 CHAIN: A, B, C, D;
COMPND 4 FRAGMENT: UNP RESIDUES 1172-1315;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7;
SOURCE 3 ORGANISM_TAXID: 36329;
SOURCE 4 GENE: PFA0510W, PFA_0510W, PFUGPA_00085;
SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10029;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15-MHL
KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC,
KEYWDS 2 BROMODOMAIN, MALARIA, PROTEIN BINDING
EXPDTA X-RAY DIFFRACTION
AUTHOR M.FONSECA,C.TALLANT,A.HUTCHINSON,P.SAVITSKY,T.KROJER,
AUTHOR 2 P.FILIPPAKOPOULOS,P.LOPPNAU,P.E.BRENNAN,F.VON DELFT,A.DONG,
AUTHOR 3 G.A.JOSLING,M.F.DUFFY,C.H.ARROWSMITH,C.BOUNTRA,R.HUI,S.KNAPP,
AUTHOR 4 A.K.WERNIMONT,STRUCTURAL GENOMICS CONSORTIUM (SGC)
REVDAT 3 28-FEB-24 4PY6 1 REMARK SEQADV
REVDAT 2 07-MAY-14 4PY6 1 AUTHOR
REVDAT 1 30-APR-14 4PY6 0
JRNL AUTH M.FONSECA,C.TALLANT,A.HUTCHINSON,P.SAVITSKY,T.KROJER,
JRNL AUTH 2 P.FILIPPAKOPOULOS,P.LOPPNAU,P.E.BRENNAN,F.VON DELFT,A.DONG,
JRNL AUTH 3 G.A.JOSLING,M.F.DUFFY,C.H.ARROWSMITH,C.BOUNTRA,R.HUI,
JRNL AUTH 4 S.KNAPP,A.K.WERNIMONT,STRUCTURAL GENOMICS CONSORTIUM (SGC)
JRNL TITL CRYSTAL STRUCTURE OF BROMODOMAIN OF PFA0510W FROM PLASMODIUM
JRNL TITL 2 FALCIPARUM
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER-TNT
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK,
REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.41
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 24293
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.239
REMARK 3 R VALUE (WORKING SET) : 0.237
REMARK 3 FREE R VALUE : 0.268
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160
REMARK 3 FREE R VALUE TEST SET COUNT : 1254
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 12
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.61
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2932
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2840
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2782
REMARK 3 BIN R VALUE (WORKING SET) : 0.2831
REMARK 3 BIN FREE R VALUE : 0.3013
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.12
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4424
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 128
REMARK 3 SOLVENT ATOMS : 134
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 49.19
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.17
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -7.21500
REMARK 3 B22 (A**2) : 12.71260
REMARK 3 B33 (A**2) : -5.49760
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.444
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.556
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.880
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 4708 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 6344 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1716 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 160 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 631 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 4708 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 592 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 5336 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.008
REMARK 3 BOND ANGLES (DEGREES) : 0.97
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.60
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.95
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 5
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|1186 - A|1317 }
REMARK 3 ORIGIN FOR THE GROUP (A): -24.611 -33.005 -42.367
REMARK 3 T TENSOR
REMARK 3 T11: -0.1734 T22: 0.1265
REMARK 3 T33: -0.1393 T12: -0.0250
REMARK 3 T13: 0.0175 T23: 0.0368
REMARK 3 L TENSOR
REMARK 3 L11: 3.0514 L22: 1.5902
REMARK 3 L33: 1.7495 L12: -0.6182
REMARK 3 L13: -0.2535 L23: -0.0212
REMARK 3 S TENSOR
REMARK 3 S11: 0.0327 S12: -0.1554 S13: 0.0950
REMARK 3 S21: 0.0146 S22: -0.0690 S23: -0.0639
REMARK 3 S31: -0.0539 S32: 0.2549 S33: 0.0363
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|1188 - B|1318 }
REMARK 3 ORIGIN FOR THE GROUP (A): -18.612 -28.669 -68.071
REMARK 3 T TENSOR
REMARK 3 T11: -0.1975 T22: 0.1738
REMARK 3 T33: -0.1636 T12: -0.0889
REMARK 3 T13: 0.0261 T23: 0.0139
REMARK 3 L TENSOR
REMARK 3 L11: 1.4343 L22: 2.6991
REMARK 3 L33: 2.1912 L12: -0.8738
REMARK 3 L13: -0.3173 L23: 0.1721
REMARK 3 S TENSOR
REMARK 3 S11: -0.0017 S12: 0.0102 S13: -0.1065
REMARK 3 S21: 0.0432 S22: -0.0913 S23: 0.2979
REMARK 3 S31: 0.2905 S32: -0.0167 S33: 0.0930
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|1190 - C|1316 }
REMARK 3 ORIGIN FOR THE GROUP (A): -23.935 -33.878 -14.584
REMARK 3 T TENSOR
REMARK 3 T11: -0.3036 T22: 0.3040
REMARK 3 T33: -0.2788 T12: -0.0191
REMARK 3 T13: -0.0370 T23: 0.0671
REMARK 3 L TENSOR
REMARK 3 L11: 1.3823 L22: 3.0168
REMARK 3 L33: 2.4232 L12: 0.0512
REMARK 3 L13: 0.2786 L23: 0.3017
REMARK 3 S TENSOR
REMARK 3 S11: 0.0103 S12: -0.0403 S13: 0.0089
REMARK 3 S21: 0.0392 S22: -0.0892 S23: -0.2379
REMARK 3 S31: -0.0287 S32: 0.1596 S33: 0.0790
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: { D|1191 - D|1318 }
REMARK 3 ORIGIN FOR THE GROUP (A): -18.679 -28.482 -95.703
REMARK 3 T TENSOR
REMARK 3 T11: -0.2083 T22: 0.3040
REMARK 3 T33: -0.3040 T12: -0.0934
REMARK 3 T13: -0.0063 T23: -0.0514
REMARK 3 L TENSOR
REMARK 3 L11: 2.7824 L22: 1.1925
REMARK 3 L33: 2.9288 L12: 0.8361
REMARK 3 L13: -0.6889 L23: -0.3668
REMARK 3 S TENSOR
REMARK 3 S11: -0.0997 S12: 0.3825 S13: 0.0251
REMARK 3 S21: -0.1371 S22: 0.0983 S23: 0.1064
REMARK 3 S31: 0.3281 S32: -0.5442 S33: 0.0014
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: { A|1401 - A|1401 C|1401 - C|1401 B|1401 - B|1401
REMARK 3 D|1401 - D|1401 }
REMARK 3 ORIGIN FOR THE GROUP (A): -17.251 -33.009 -52.394
REMARK 3 T TENSOR
REMARK 3 T11: -0.0719 T22: 0.1237
REMARK 3 T33: -0.2834 T12: 0.0158
REMARK 3 T13: -0.0314 T23: 0.0669
REMARK 3 L TENSOR
REMARK 3 L11: 1.2277 L22: 0.0000
REMARK 3 L33: 1.4275 L12: -0.9919
REMARK 3 L13: -2.8831 L23: -1.8491
REMARK 3 S TENSOR
REMARK 3 S11: -0.0083 S12: -0.1224 S13: -0.0205
REMARK 3 S21: 0.0059 S22: -0.0374 S23: 0.0314
REMARK 3 S31: 0.0338 S32: 0.0753 S33: 0.0458
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4PY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-14.
REMARK 100 THE DEPOSITION ID IS D_1000085366.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 28-FEB-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I02
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : .97949
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17, XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29757
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330
REMARK 200 RESOLUTION RANGE LOW (A) : 29.410
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 200 DATA REDUNDANCY : 6.100
REMARK 200 R MERGE (I) : 0.16400
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41
REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5
REMARK 200 DATA REDUNDANCY IN SHELL : 6.10
REMARK 200 R MERGE FOR SHELL (I) : 0.56100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 50.07
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 0.1 M CACL2, 20% PEG6K,
REMARK 280 15% ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 277K, PH 8.5
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.16200
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.13450
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.86200
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.16200
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.13450
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 109.86200
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.16200
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.13450
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.86200
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.16200
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.13450
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.86200
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: AUTHORS HAVE INDICATED THAT THE BIOLOGICAL UNIT IS UNKNOWN
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 16040 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 15500 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 1174
REMARK 465 TYR A 1175
REMARK 465 ASN A 1176
REMARK 465 GLY A 1177
REMARK 465 ASP A 1178
REMARK 465 GLU A 1179
REMARK 465 LYS A 1180
REMARK 465 SER A 1181
REMARK 465 VAL A 1182
REMARK 465 SER A 1183
REMARK 465 LYS A 1184
REMARK 465 ALA A 1185
REMARK 465 ASN A 1318
REMARK 465 GLY B 1174
REMARK 465 TYR B 1175
REMARK 465 ASN B 1176
REMARK 465 GLY B 1177
REMARK 465 ASP B 1178
REMARK 465 GLU B 1179
REMARK 465 LYS B 1180
REMARK 465 SER B 1181
REMARK 465 VAL B 1182
REMARK 465 SER B 1183
REMARK 465 LYS B 1184
REMARK 465 ALA B 1185
REMARK 465 GLU B 1186
REMARK 465 ASN B 1187
REMARK 465 GLY C 1174
REMARK 465 TYR C 1175
REMARK 465 ASN C 1176
REMARK 465 GLY C 1177
REMARK 465 ASP C 1178
REMARK 465 GLU C 1179
REMARK 465 LYS C 1180
REMARK 465 SER C 1181
REMARK 465 VAL C 1182
REMARK 465 SER C 1183
REMARK 465 LYS C 1184
REMARK 465 ALA C 1185
REMARK 465 GLU C 1186
REMARK 465 ASN C 1187
REMARK 465 SER C 1188
REMARK 465 ASN C 1189
REMARK 465 ASN C 1317
REMARK 465 ASN C 1318
REMARK 465 GLY D 1174
REMARK 465 TYR D 1175
REMARK 465 ASN D 1176
REMARK 465 GLY D 1177
REMARK 465 ASP D 1178
REMARK 465 GLU D 1179
REMARK 465 LYS D 1180
REMARK 465 SER D 1181
REMARK 465 VAL D 1182
REMARK 465 SER D 1183
REMARK 465 LYS D 1184
REMARK 465 ALA D 1185
REMARK 465 GLU D 1186
REMARK 465 ASN D 1187
REMARK 465 SER D 1188
REMARK 465 ASN D 1189
REMARK 465 LYS D 1190
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ASN A1317 CG OD1 ND2
REMARK 470 SER B1188 OG
REMARK 470 LYS B1190 CG CD CE NZ
REMARK 470 LYS C1190 CG CD CE NZ
REMARK 470 GLU C1283 CG CD OE1 OE2
REMARK 470 LEU C1316 CG CD1 CD2
REMARK 470 ARG D1191 CG CD NE CZ NH1 NH2
REMARK 470 ILE D1256 CG1 CG2 CD1
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PHE A1215 -54.32 -28.64
REMARK 500 LYS B1190 74.24 -119.94
REMARK 500 PHE B1215 -57.15 -28.17
REMARK 500 PHE C1215 -59.66 -26.71
REMARK 500 LYS D1218 -73.83 -68.64
REMARK 500 ASP D1280 82.85 -68.72
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 R78 A 1401
REMARK 610 R78 B 1401
REMARK 610 R78 C 1401
REMARK 610 R78 D 1401
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R78 A 1401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R78 B 1401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R78 C 1401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R78 D 1401
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: PFA0510W RELATED DB: TARGETTRACK
DBREF 4PY6 A 1175 1318 UNP Q8I240 Q8I240_PLAF7 1172 1315
DBREF 4PY6 B 1175 1318 UNP Q8I240 Q8I240_PLAF7 1172 1315
DBREF 4PY6 C 1175 1318 UNP Q8I240 Q8I240_PLAF7 1172 1315
DBREF 4PY6 D 1175 1318 UNP Q8I240 Q8I240_PLAF7 1172 1315
SEQADV 4PY6 GLY A 1174 UNP Q8I240 EXPRESSION TAG
SEQADV 4PY6 GLY B 1174 UNP Q8I240 EXPRESSION TAG
SEQADV 4PY6 GLY C 1174 UNP Q8I240 EXPRESSION TAG
SEQADV 4PY6 GLY D 1174 UNP Q8I240 EXPRESSION TAG
SEQRES 1 A 145 GLY TYR ASN GLY ASP GLU LYS SER VAL SER LYS ALA GLU
SEQRES 2 A 145 ASN SER ASN LYS ARG LEU LEU LYS GLN TRP GLU LYS ILE
SEQRES 3 A 145 LEU ARG ASP ASN VAL LEU LYS LEU LEU LYS ASN ASP ASN
SEQRES 4 A 145 ASN ALA PHE TYR PHE LYS THR PRO VAL LEU GLU ASP ILE
SEQRES 5 A 145 ASN ILE ASN ASP ASN ILE LYS GLU GLU TYR ARG ILE LYS
SEQRES 6 A 145 ILE LYS LYS PRO MET ASP TYR ILE THR ILE SER ARG ASN
SEQRES 7 A 145 LEU SER ASP GLY ILE TYR LYS GLU PRO ILE ASP PHE TYR
SEQRES 8 A 145 HIS ASP MET LYS LEU ILE TYR LYS ASN CYS ILE ASP PHE
SEQRES 9 A 145 ASN PRO ASP ILE GLU GLU ASN LYS TYR ILE ILE GLU ALA
SEQRES 10 A 145 ALA LYS SER SER ASP MET LYS PHE GLU PHE LEU TRP ASN
SEQRES 11 A 145 LYS TRP LYS GLU LYS ILE ASN ASN ASN PHE CYS ASP LEU
SEQRES 12 A 145 ASN ASN
SEQRES 1 B 145 GLY TYR ASN GLY ASP GLU LYS SER VAL SER LYS ALA GLU
SEQRES 2 B 145 ASN SER ASN LYS ARG LEU LEU LYS GLN TRP GLU LYS ILE
SEQRES 3 B 145 LEU ARG ASP ASN VAL LEU LYS LEU LEU LYS ASN ASP ASN
SEQRES 4 B 145 ASN ALA PHE TYR PHE LYS THR PRO VAL LEU GLU ASP ILE
SEQRES 5 B 145 ASN ILE ASN ASP ASN ILE LYS GLU GLU TYR ARG ILE LYS
SEQRES 6 B 145 ILE LYS LYS PRO MET ASP TYR ILE THR ILE SER ARG ASN
SEQRES 7 B 145 LEU SER ASP GLY ILE TYR LYS GLU PRO ILE ASP PHE TYR
SEQRES 8 B 145 HIS ASP MET LYS LEU ILE TYR LYS ASN CYS ILE ASP PHE
SEQRES 9 B 145 ASN PRO ASP ILE GLU GLU ASN LYS TYR ILE ILE GLU ALA
SEQRES 10 B 145 ALA LYS SER SER ASP MET LYS PHE GLU PHE LEU TRP ASN
SEQRES 11 B 145 LYS TRP LYS GLU LYS ILE ASN ASN ASN PHE CYS ASP LEU
SEQRES 12 B 145 ASN ASN
SEQRES 1 C 145 GLY TYR ASN GLY ASP GLU LYS SER VAL SER LYS ALA GLU
SEQRES 2 C 145 ASN SER ASN LYS ARG LEU LEU LYS GLN TRP GLU LYS ILE
SEQRES 3 C 145 LEU ARG ASP ASN VAL LEU LYS LEU LEU LYS ASN ASP ASN
SEQRES 4 C 145 ASN ALA PHE TYR PHE LYS THR PRO VAL LEU GLU ASP ILE
SEQRES 5 C 145 ASN ILE ASN ASP ASN ILE LYS GLU GLU TYR ARG ILE LYS
SEQRES 6 C 145 ILE LYS LYS PRO MET ASP TYR ILE THR ILE SER ARG ASN
SEQRES 7 C 145 LEU SER ASP GLY ILE TYR LYS GLU PRO ILE ASP PHE TYR
SEQRES 8 C 145 HIS ASP MET LYS LEU ILE TYR LYS ASN CYS ILE ASP PHE
SEQRES 9 C 145 ASN PRO ASP ILE GLU GLU ASN LYS TYR ILE ILE GLU ALA
SEQRES 10 C 145 ALA LYS SER SER ASP MET LYS PHE GLU PHE LEU TRP ASN
SEQRES 11 C 145 LYS TRP LYS GLU LYS ILE ASN ASN ASN PHE CYS ASP LEU
SEQRES 12 C 145 ASN ASN
SEQRES 1 D 145 GLY TYR ASN GLY ASP GLU LYS SER VAL SER LYS ALA GLU
SEQRES 2 D 145 ASN SER ASN LYS ARG LEU LEU LYS GLN TRP GLU LYS ILE
SEQRES 3 D 145 LEU ARG ASP ASN VAL LEU LYS LEU LEU LYS ASN ASP ASN
SEQRES 4 D 145 ASN ALA PHE TYR PHE LYS THR PRO VAL LEU GLU ASP ILE
SEQRES 5 D 145 ASN ILE ASN ASP ASN ILE LYS GLU GLU TYR ARG ILE LYS
SEQRES 6 D 145 ILE LYS LYS PRO MET ASP TYR ILE THR ILE SER ARG ASN
SEQRES 7 D 145 LEU SER ASP GLY ILE TYR LYS GLU PRO ILE ASP PHE TYR
SEQRES 8 D 145 HIS ASP MET LYS LEU ILE TYR LYS ASN CYS ILE ASP PHE
SEQRES 9 D 145 ASN PRO ASP ILE GLU GLU ASN LYS TYR ILE ILE GLU ALA
SEQRES 10 D 145 ALA LYS SER SER ASP MET LYS PHE GLU PHE LEU TRP ASN
SEQRES 11 D 145 LYS TRP LYS GLU LYS ILE ASN ASN ASN PHE CYS ASP LEU
SEQRES 12 D 145 ASN ASN
HET R78 A1401 58
HET EDO A1402 4
HET R78 B1401 29
HET EDO B1402 4
HET EDO B1403 4
HET R78 C1401 29
HET R78 D1401 29
HETNAM R78 4-{[(7R)-8-CYCLOPENTYL-7-ETHYL-5-METHYL-6-OXO-5,6,7,8-
HETNAM 2 R78 TETRAHYDROPTERIDIN-2-YL]AMINO}-3-METHOXY-N-(1-
HETNAM 3 R78 METHYLPIPERIDIN-4-YL)BENZAMIDE
HETNAM EDO 1,2-ETHANEDIOL
HETSYN EDO ETHYLENE GLYCOL
FORMUL 5 R78 4(C28 H39 N7 O3)
FORMUL 6 EDO 3(C2 H6 O2)
FORMUL 12 HOH *134(H2 O)
HELIX 1 1 LYS A 1194 VAL A 1204 1 11
HELIX 2 2 ALA A 1214 LYS A 1218 5 5
HELIX 3 3 ASN A 1228 ILE A 1239 1 12
HELIX 4 4 ASP A 1244 GLY A 1255 1 12
HELIX 5 5 GLU A 1259 ASN A 1278 1 20
HELIX 6 6 ILE A 1281 GLU A 1283 5 3
HELIX 7 7 ASN A 1284 ASN A 1312 1 29
HELIX 8 8 LYS B 1194 VAL B 1204 1 11
HELIX 9 9 VAL B 1204 LYS B 1209 1 6
HELIX 10 10 ALA B 1214 LYS B 1218 5 5
HELIX 11 11 ASN B 1228 ILE B 1239 1 12
HELIX 12 12 ASP B 1244 GLY B 1255 1 12
HELIX 13 13 GLU B 1259 ASN B 1278 1 20
HELIX 14 14 ASN B 1284 LEU B 1316 1 33
HELIX 15 15 LYS C 1194 VAL C 1204 1 11
HELIX 16 16 VAL C 1204 ASN C 1210 1 7
HELIX 17 17 ALA C 1214 LYS C 1218 5 5
HELIX 18 18 ASN C 1228 ILE C 1239 1 12
HELIX 19 19 ASP C 1244 GLY C 1255 1 12
HELIX 20 20 GLU C 1259 ASN C 1278 1 20
HELIX 21 21 ASN C 1284 ASN C 1312 1 29
HELIX 22 22 LYS D 1194 ASN D 1203 1 10
HELIX 23 23 VAL D 1204 LYS D 1209 1 6
HELIX 24 24 ASN D 1228 ILE D 1239 1 12
HELIX 25 25 ASP D 1244 ASP D 1254 1 11
HELIX 26 26 GLU D 1259 ASN D 1278 1 20
HELIX 27 27 ILE D 1281 GLU D 1283 5 3
HELIX 28 28 ASN D 1284 LEU D 1316 1 33
SHEET 1 A 2 SER A1188 ASN A1189 0
SHEET 2 A 2 ARG B1191 LEU B1192 -1 O LEU B1192 N SER A1188
SITE 1 AC1 9 PHE A1215 TYR A1216 ASP A1224 ASN A1226
SITE 2 AC1 9 ILE A1227 PHE A1277 ASN A1278 ILE A1287
SITE 3 AC1 9 HOH A1501
SITE 1 AC2 3 LYS A1194 TRP A1196 CYS A1314
SITE 1 AC3 8 PHE B1215 TYR B1216 ASN B1226 ILE B1227
SITE 2 AC3 8 PHE B1277 ASN B1278 ASN B1284 ILE B1287
SITE 1 AC4 3 ARG A1236 LYS B1240 PRO B1242
SITE 1 AC5 4 LYS B1241 MET B1243 ASN B1251 ASP B1266
SITE 1 AC6 7 PHE C1215 TYR C1216 ASN C1226 ILE C1227
SITE 2 AC6 7 ASN C1278 ASN C1284 ILE C1287
SITE 1 AC7 10 PHE D1215 TYR D1216 ASP D1224 ASN D1226
SITE 2 AC7 10 ILE D1227 PHE D1277 ASN D1278 ASN D1284
SITE 3 AC7 10 ILE D1287 HOH D1514
CRYST1 74.324 84.269 219.724 90.00 90.00 90.00 I 2 2 2 32
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013455 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011867 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004551 0.00000