HEADER IMMUNE SYSTEM 26-MAR-14 4PY7 TITLE CRYSTAL STRUCTURE OF FAB 3.1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY 3.1 HEAVY CHAIN; COMPND 3 CHAIN: I, A; COMPND 4 FRAGMENT: FAB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ANTIBODY 3.1 LIGHT CHAIN; COMPND 8 CHAIN: J, B; COMPND 9 FRAGMENT: FAB; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNOGLOBULIN FAB FRAGMENT, NEUTRALIZING ANTIBODY, HEMAGGLUTININ KEYWDS 2 GLYCOPROTEINS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.DREYFUS REVDAT 2 04-JUN-14 4PY7 1 JRNL REVDAT 1 21-MAY-14 4PY7 0 JRNL AUTH A.WYRZUCKI,C.DREYFUS,I.KOHLER,M.STECK,I.A.WILSON, JRNL AUTH 2 L.HANGARTNER JRNL TITL ALTERNATIVE RECOGNITION OF THE CONSERVED STEM EPITOPE IN JRNL TITL 2 INFLUENZA A VIRUS HEMAGGLUTININ BY A VH3-30-ENCODED JRNL TITL 3 HETEROSUBTYPIC ANTIBODY. JRNL REF J.VIROL. V. 88 7083 2014 JRNL REFN ISSN 0022-538X JRNL PMID 24719426 JRNL DOI 10.1128/JVI.00178-14 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 28423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1521 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2117 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.4520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6498 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : 1.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.360 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.299 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.868 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6654 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9056 ; 1.498 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 849 ; 7.314 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 262 ;37.137 ;23.969 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1055 ;21.082 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.833 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1023 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5012 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4249 ; 0.626 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6870 ; 1.203 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2405 ; 1.464 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2186 ; 2.553 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-14. REMARK 100 THE RCSB ID CODE IS RCSB085367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 75 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.71941 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30297 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 10% PEG8000, REMARK 280 100 MM TRIS, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.97700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 155.96550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.98850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER I 135 REMARK 465 SER I 136 REMARK 465 GLY I 137 REMARK 465 GLY I 138 REMARK 465 GLU J 213 REMARK 465 CYS J 214 REMARK 465 SER A 133 REMARK 465 GLY A 134 REMARK 465 GLY A 135 REMARK 465 GLU B 213 REMARK 465 CYS B 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS I 218 CG CD CE NZ REMARK 470 LYS A 64 CE NZ REMARK 470 LYS A 215 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER I 25 106.10 178.25 REMARK 500 ARG I 30 -15.10 -47.56 REMARK 500 LYS I 43 -166.91 -111.25 REMARK 500 ASN I 56 149.89 -179.79 REMARK 500 LYS I 57 75.19 111.81 REMARK 500 ALA I 91 165.38 170.60 REMARK 500 SER I 160 26.37 45.15 REMARK 500 SER I 177 -27.01 152.06 REMARK 500 SER I 192 -8.86 172.44 REMARK 500 PRO I 217 -171.14 -59.75 REMARK 500 GLN J 3 107.57 53.57 REMARK 500 SER J 26 4.07 -63.74 REMARK 500 SER J 30 -94.73 74.55 REMARK 500 SER J 31 26.07 -157.50 REMARK 500 LEU J 47 -57.72 -128.48 REMARK 500 ALA J 51 -52.51 65.65 REMARK 500 THR J 69 -43.42 -140.09 REMARK 500 ASN J 138 79.42 47.54 REMARK 500 ALA J 144 145.21 126.57 REMARK 500 LYS J 145 61.19 111.27 REMARK 500 ASN J 152 -7.40 69.85 REMARK 500 GLU J 187 0.22 -70.00 REMARK 500 ARG A 30 -8.78 -50.28 REMARK 500 LYS A 64 115.95 129.95 REMARK 500 ALA A 88 167.86 174.94 REMARK 500 SER A 157 28.56 46.38 REMARK 500 SER A 189 -7.92 155.22 REMARK 500 PRO A 214 -178.77 -67.25 REMARK 500 GLN B 3 100.48 63.81 REMARK 500 SER B 30 -93.46 72.68 REMARK 500 SER B 31 38.70 -155.66 REMARK 500 TRP B 32 63.76 -105.27 REMARK 500 TYR B 49 -168.78 -122.64 REMARK 500 ALA B 50 -81.78 52.05 REMARK 500 ALA B 51 -18.20 -160.29 REMARK 500 SER B 52 -14.80 -140.09 REMARK 500 ASN B 92 -67.32 -102.26 REMARK 500 ASN B 138 82.00 44.41 REMARK 500 ALA B 144 151.31 159.83 REMARK 500 LYS B 145 49.15 118.23 REMARK 500 ASN B 152 -13.06 69.92 REMARK 500 LYS B 190 -53.74 -133.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER I 25 GLU I 26 33.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS I 57 23.2 L L OUTSIDE RANGE REMARK 500 LYS J 145 25.0 L L OUTSIDE RANGE REMARK 500 ASN A 56 21.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PY8 RELATED DB: PDB DBREF 4PY7 I 1 218 PDB 4PY7 4PY7 1 218 DBREF 4PY7 A 1 215 PDB 4PY7 4PY7 1 215 DBREF 4PY7 J 1 214 PDB 4PY7 4PY7 1 214 DBREF 4PY7 B 1 214 PDB 4PY7 4PY7 1 214 SEQRES 1 I 219 GLN VAL GLN LEU VAL GLN SER GLY GLY GLY VAL VAL GLN SEQRES 2 I 219 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLU SEQRES 3 I 219 PHE THR PHE ARG MET TYR ALA THR HIS TRP VAL ARG GLN SEQRES 4 I 219 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA LEU ILE SER SEQRES 5 I 219 TYR ASP GLY SER ASN LYS TYR TYR ALA ASP SER VAL LYS SEQRES 6 I 219 GLY ARG PHE THR ILE SER ARG ASP ASN SER MET ASN THR SEQRES 7 I 219 VAL TYR LEU GLN MET ASN THR LEU ARG PRO GLU ASP THR SEQRES 8 I 219 ALA VAL TYR TYR CYS ALA ARG ASP LEU GLY GLY TYR PHE SEQRES 9 I 219 ILE ARG GLY ILE MET ASP VAL TRP GLY GLN GLY THR LEU SEQRES 10 I 219 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 I 219 PHE PRO LEU ALA PRO SER SER GLY GLY THR ALA ALA LEU SEQRES 12 I 219 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 I 219 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 I 219 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 I 219 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 I 219 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 I 219 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SEQRES 1 J 214 GLU LEU GLN MET THR GLN SER PRO SER SER VAL SER ALA SEQRES 2 J 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 J 214 GLN GLY ILE SER SER TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 J 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 J 214 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 J 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 J 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN ALA SEQRES 8 J 214 ASN SER PHE PRO LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 J 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 J 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 J 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 J 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 J 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 J 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 J 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 J 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 J 214 PHE ASN ARG GLY GLU CYS SEQRES 1 A 219 GLN VAL GLN LEU VAL GLN SER GLY GLY GLY VAL VAL GLN SEQRES 2 A 219 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLU SEQRES 3 A 219 PHE THR PHE ARG MET TYR ALA THR HIS TRP VAL ARG GLN SEQRES 4 A 219 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA LEU ILE SER SEQRES 5 A 219 TYR ASP GLY SER ASN LYS TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 219 GLY ARG PHE THR ILE SER ARG ASP ASN SER MET ASN THR SEQRES 7 A 219 VAL TYR LEU GLN MET ASN THR LEU ARG PRO GLU ASP THR SEQRES 8 A 219 ALA VAL TYR TYR CYS ALA ARG ASP LEU GLY GLY TYR PHE SEQRES 9 A 219 ILE ARG GLY ILE MET ASP VAL TRP GLY GLN GLY THR LEU SEQRES 10 A 219 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 A 219 PHE PRO LEU ALA PRO SER SER GLY GLY THR ALA ALA LEU SEQRES 12 A 219 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 A 219 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 A 219 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 A 219 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 A 219 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 A 219 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SEQRES 1 B 214 GLU LEU GLN MET THR GLN SER PRO SER SER VAL SER ALA SEQRES 2 B 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 B 214 GLN GLY ILE SER SER TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 B 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 B 214 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 B 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN ALA SEQRES 8 B 214 ASN SER PHE PRO LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 B 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 B 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 B 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 B 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 B 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 B 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 B 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 B 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 B 214 PHE ASN ARG GLY GLU CYS HELIX 1 1 THR I 28 TYR I 32 5 5 HELIX 2 2 ASP I 61 LYS I 64 5 4 HELIX 3 3 ASN I 73 MET I 75 5 3 HELIX 4 4 ARG I 86 THR I 90 5 5 HELIX 5 5 SER I 160 ALA I 162 5 3 HELIX 6 6 LYS I 205 ASN I 208 5 4 HELIX 7 7 GLN J 79 PHE J 83 5 5 HELIX 8 8 SER J 121 GLY J 128 1 8 HELIX 9 9 LYS J 183 GLU J 187 1 5 HELIX 10 10 THR A 28 TYR A 32 5 5 HELIX 11 11 ASN A 73 MET A 75 5 3 HELIX 12 12 ARG A 83 THR A 87 5 5 HELIX 13 13 SER A 157 ALA A 159 5 3 HELIX 14 14 LYS A 202 ASN A 205 5 4 HELIX 15 15 GLN B 79 PHE B 83 5 5 HELIX 16 16 SER B 121 SER B 127 1 7 HELIX 17 17 LYS B 183 GLU B 187 1 5 SHEET 1 A 4 GLN I 3 SER I 7 0 SHEET 2 A 4 LEU I 18 SER I 25 -1 O ALA I 23 N VAL I 5 SHEET 3 A 4 THR I 77 MET I 82 -1 O LEU I 80 N LEU I 20 SHEET 4 A 4 PHE I 67 ASP I 72 -1 N THR I 68 O GLN I 81 SHEET 1 B 6 GLY I 10 VAL I 12 0 SHEET 2 B 6 THR I 115 VAL I 119 1 O THR I 118 N VAL I 12 SHEET 3 B 6 ALA I 91 ASP I 98 -1 N TYR I 93 O THR I 115 SHEET 4 B 6 THR I 34 GLN I 39 -1 N HIS I 35 O ALA I 96 SHEET 5 B 6 LEU I 45 ILE I 51 -1 O GLU I 46 N ARG I 38 SHEET 6 B 6 LYS I 57 TYR I 59 -1 O TYR I 58 N LEU I 50 SHEET 1 C 4 GLY I 10 VAL I 12 0 SHEET 2 C 4 THR I 115 VAL I 119 1 O THR I 118 N VAL I 12 SHEET 3 C 4 ALA I 91 ASP I 98 -1 N TYR I 93 O THR I 115 SHEET 4 C 4 MET I 108 TRP I 111 -1 O VAL I 110 N ARG I 97 SHEET 1 D 4 SER I 128 LEU I 132 0 SHEET 2 D 4 ALA I 140 TYR I 149 -1 O GLY I 143 N LEU I 132 SHEET 3 D 4 TYR I 180 VAL I 188 -1 O TYR I 180 N TYR I 149 SHEET 4 D 4 VAL I 167 THR I 169 -1 N HIS I 168 O VAL I 185 SHEET 1 E 4 SER I 128 LEU I 132 0 SHEET 2 E 4 ALA I 140 TYR I 149 -1 O GLY I 143 N LEU I 132 SHEET 3 E 4 TYR I 180 VAL I 188 -1 O TYR I 180 N TYR I 149 SHEET 4 E 4 VAL I 173 LEU I 174 -1 N VAL I 173 O SER I 181 SHEET 1 F 3 THR I 155 TRP I 158 0 SHEET 2 F 3 ILE I 199 HIS I 204 -1 O ASN I 201 N SER I 157 SHEET 3 F 3 THR I 209 ARG I 214 -1 O VAL I 211 N VAL I 202 SHEET 1 G 4 MET J 4 SER J 7 0 SHEET 2 G 4 VAL J 19 ALA J 25 -1 O ARG J 24 N THR J 5 SHEET 3 G 4 ASP J 70 ILE J 75 -1 O LEU J 73 N ILE J 21 SHEET 4 G 4 PHE J 62 SER J 67 -1 N SER J 63 O THR J 74 SHEET 1 H 6 SER J 10 ALA J 13 0 SHEET 2 H 6 THR J 102 ILE J 106 1 O LYS J 103 N VAL J 11 SHEET 3 H 6 THR J 85 GLN J 90 -1 N TYR J 86 O THR J 102 SHEET 4 H 6 LEU J 33 GLN J 38 -1 N GLN J 38 O THR J 85 SHEET 5 H 6 LYS J 45 TYR J 49 -1 O ILE J 48 N TRP J 35 SHEET 6 H 6 SER J 53 LEU J 54 -1 O SER J 53 N TYR J 49 SHEET 1 I 4 SER J 10 ALA J 13 0 SHEET 2 I 4 THR J 102 ILE J 106 1 O LYS J 103 N VAL J 11 SHEET 3 I 4 THR J 85 GLN J 90 -1 N TYR J 86 O THR J 102 SHEET 4 I 4 THR J 97 PHE J 98 -1 O THR J 97 N GLN J 90 SHEET 1 J 4 SER J 114 PHE J 118 0 SHEET 2 J 4 THR J 129 PHE J 139 -1 O ASN J 137 N SER J 114 SHEET 3 J 4 TYR J 173 SER J 182 -1 O LEU J 181 N ALA J 130 SHEET 4 J 4 SER J 159 VAL J 163 -1 N SER J 162 O SER J 176 SHEET 1 K 4 ALA J 153 LEU J 154 0 SHEET 2 K 4 VAL J 146 VAL J 150 -1 N VAL J 150 O ALA J 153 SHEET 3 K 4 VAL J 191 VAL J 196 -1 O GLU J 195 N GLN J 147 SHEET 4 K 4 VAL J 205 ASN J 210 -1 O VAL J 205 N VAL J 196 SHEET 1 L 4 GLN A 3 SER A 7 0 SHEET 2 L 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 L 4 THR A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 L 4 PHE A 67 ASP A 72 -1 N THR A 68 O GLN A 81 SHEET 1 M 6 GLY A 10 VAL A 12 0 SHEET 2 M 6 THR A 112 VAL A 116 1 O THR A 115 N VAL A 12 SHEET 3 M 6 ALA A 88 ASP A 95 -1 N TYR A 90 O THR A 112 SHEET 4 M 6 THR A 34 GLN A 39 -1 N HIS A 35 O ALA A 93 SHEET 5 M 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 M 6 LYS A 57 TYR A 59 -1 O TYR A 58 N LEU A 50 SHEET 1 N 4 GLY A 10 VAL A 12 0 SHEET 2 N 4 THR A 112 VAL A 116 1 O THR A 115 N VAL A 12 SHEET 3 N 4 ALA A 88 ASP A 95 -1 N TYR A 90 O THR A 112 SHEET 4 N 4 MET A 105 TRP A 108 -1 O VAL A 107 N ARG A 94 SHEET 1 O 4 SER A 125 LEU A 129 0 SHEET 2 O 4 ALA A 138 TYR A 146 -1 O LEU A 142 N PHE A 127 SHEET 3 O 4 TYR A 177 THR A 184 -1 O VAL A 183 N LEU A 139 SHEET 4 O 4 VAL A 164 THR A 166 -1 N HIS A 165 O VAL A 182 SHEET 1 P 4 SER A 125 LEU A 129 0 SHEET 2 P 4 ALA A 138 TYR A 146 -1 O LEU A 142 N PHE A 127 SHEET 3 P 4 TYR A 177 THR A 184 -1 O VAL A 183 N LEU A 139 SHEET 4 P 4 VAL A 170 LEU A 171 -1 N VAL A 170 O SER A 178 SHEET 1 Q 3 THR A 152 TRP A 155 0 SHEET 2 Q 3 ILE A 196 HIS A 201 -1 O ASN A 198 N SER A 154 SHEET 3 Q 3 THR A 206 ARG A 211 -1 O VAL A 208 N VAL A 199 SHEET 1 R 4 MET B 4 SER B 7 0 SHEET 2 R 4 VAL B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 R 4 ASP B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 R 4 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 S 6 SER B 10 ALA B 13 0 SHEET 2 S 6 THR B 102 ILE B 106 1 O LYS B 103 N VAL B 11 SHEET 3 S 6 THR B 85 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 S 6 LEU B 33 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 5 S 6 LYS B 45 TYR B 49 -1 O LYS B 45 N GLN B 37 SHEET 6 S 6 SER B 53 LEU B 54 -1 O SER B 53 N TYR B 49 SHEET 1 T 4 SER B 10 ALA B 13 0 SHEET 2 T 4 THR B 102 ILE B 106 1 O LYS B 103 N VAL B 11 SHEET 3 T 4 THR B 85 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 T 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 U 4 SER B 114 PHE B 118 0 SHEET 2 U 4 THR B 129 PHE B 139 -1 O ASN B 137 N SER B 114 SHEET 3 U 4 TYR B 173 SER B 182 -1 O LEU B 175 N LEU B 136 SHEET 4 U 4 SER B 159 VAL B 163 -1 N GLN B 160 O THR B 178 SHEET 1 V 4 ALA B 153 LEU B 154 0 SHEET 2 V 4 VAL B 146 VAL B 150 -1 N VAL B 150 O ALA B 153 SHEET 3 V 4 VAL B 191 VAL B 196 -1 O ALA B 193 N LYS B 149 SHEET 4 V 4 VAL B 205 ASN B 210 -1 O VAL B 205 N VAL B 196 SSBOND 1 CYS I 22 CYS I 95 1555 1555 2.05 SSBOND 2 CYS I 144 CYS I 200 1555 1555 2.03 SSBOND 3 CYS J 23 CYS J 88 1555 1555 2.09 SSBOND 4 CYS J 134 CYS J 194 1555 1555 2.07 SSBOND 5 CYS A 22 CYS A 92 1555 1555 2.04 SSBOND 6 CYS A 141 CYS A 197 1555 1555 2.04 SSBOND 7 CYS B 23 CYS B 88 1555 1555 2.07 SSBOND 8 CYS B 134 CYS B 194 1555 1555 2.06 CISPEP 1 ASN I 56 LYS I 57 0 -3.40 CISPEP 2 GLY I 101 TYR I 102 0 25.92 CISPEP 3 PHE I 150 PRO I 151 0 -1.34 CISPEP 4 GLU I 152 PRO I 153 0 8.67 CISPEP 5 SER J 7 PRO J 8 0 -15.36 CISPEP 6 PHE J 94 PRO J 95 0 -2.97 CISPEP 7 TYR J 140 PRO J 141 0 -4.55 CISPEP 8 ALA J 144 LYS J 145 0 -2.80 CISPEP 9 GLY A 98 TYR A 99 0 9.39 CISPEP 10 PHE A 147 PRO A 148 0 2.04 CISPEP 11 GLU A 149 PRO A 150 0 5.10 CISPEP 12 SER B 7 PRO B 8 0 -10.61 CISPEP 13 PHE B 94 PRO B 95 0 -7.43 CISPEP 14 TYR B 140 PRO B 141 0 -1.96 CISPEP 15 ALA B 144 LYS B 145 0 -10.20 CRYST1 73.842 73.842 207.954 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013542 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004809 0.00000