HEADER TRANSFERASE, HYDROLASE/RNA/DNA/INHIBITOR01-APR-14 4Q0B TITLE CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH GAP- TITLE 2 RNA/DNA AND NEVIRAPINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE, P66 SUBUNIT; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 600-1153; COMPND 5 EC: 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: UNP RESIDUES 600-1027; COMPND 12 EC: 2.7.7.49, 2.7.7.7; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: 5'-R(*AP*UP*GP*GP*UP*CP*GP*GP*CP*GP*CP*CP*CP*G)-3'; COMPND 17 CHAIN: T, E; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: GAP-RNA TEMPLATE; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: 5'-R(P*AP*CP*AP*GP*GP*GP*AP*CP*UP*GP*UP*G)-3'; COMPND 22 CHAIN: t, e; COMPND 23 ENGINEERED: YES; COMPND 24 OTHER_DETAILS: GAP-RNA TEMPLATE; COMPND 25 MOL_ID: 5; COMPND 26 MOLECULE: 5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP* COMPND 27 CP*CP*G)-3'; COMPND 28 CHAIN: P, F; COMPND 29 ENGINEERED: YES; COMPND 30 OTHER_DETAILS: DNA PRIMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11678; SOURCE 5 STRAIN: BH10; SOURCE 6 GENE: GAG-POL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 12 ORGANISM_COMMON: HIV-1; SOURCE 13 ORGANISM_TAXID: 11678; SOURCE 14 STRAIN: BH10; SOURCE 15 GENE: GAG-POL; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 MOL_ID: 4; SOURCE 22 SYNTHETIC: YES; SOURCE 23 MOL_ID: 5; SOURCE 24 SYNTHETIC: YES KEYWDS FINGERS, PALM, THUMB, CONNECTION, RNASE H, NUCLEOTIDYLTRANSFERASE, KEYWDS 2 DNA-DIRECTED DNA POLYMERASE, RNA-DIRECTED DNA POLYMERASE, KEYWDS 3 RIBONUCLEASE H, TRNA, TRANSFERASE, HYDROLASE-RNA-DNA-INHIBITOR KEYWDS 4 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.DAS,S.E.MARTINEZ,E.ARNOLD REVDAT 3 20-SEP-23 4Q0B 1 REMARK DBREF SEQADV LINK REVDAT 2 16-JUL-14 4Q0B 1 JRNL REVDAT 1 18-JUN-14 4Q0B 0 JRNL AUTH K.DAS,S.E.MARTINEZ,R.P.BANDWAR,E.ARNOLD JRNL TITL STRUCTURES OF HIV-1 RT-RNA/DNA TERNARY COMPLEXES WITH DATP JRNL TITL 2 AND NEVIRAPINE REVEAL CONFORMATIONAL FLEXIBILITY OF RNA/DNA: JRNL TITL 3 INSIGHTS INTO REQUIREMENTS FOR RNASE H CLEAVAGE. JRNL REF NUCLEIC ACIDS RES. V. 42 8125 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24880687 JRNL DOI 10.1093/NAR/GKU487 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.DAS,S.E.MARTINEZ,J.D.BAUMAN,E.ARNOLD REMARK 1 TITL HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND NEVIRAPINE REMARK 1 TITL 2 REVEALS NON-NUCLEOSIDE INHIBITION MECHANISM. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 19 253 2012 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 22266819 REMARK 1 DOI 10.1038/NSMB.2223 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.DAS,R.P.BANDWAR,K.L.WHITE,J.Y.FENG,S.G.SARAFIANOS,S.TUSKE, REMARK 1 AUTH 2 X.TU,A.D.CLARK,P.L.BOYER,X.HOU,B.L.GAFFNEY,R.A.JONES, REMARK 1 AUTH 3 M.D.MILLER,S.H.HUGHES,E.ARNOLD REMARK 1 TITL STRUCTURAL BASIS FOR THE ROLE OF THE K65R MUTATION IN HIV-1 REMARK 1 TITL 2 REVERSE TRANSCRIPTASE POLYMERIZATION, EXCISION ANTAGONISM, REMARK 1 TITL 3 AND TENOFOVIR RESISTANCE. REMARK 1 REF J.BIOL.CHEM. V. 284 35092 2009 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 19812032 REMARK 1 DOI 10.1074/JBC.M109.022525 REMARK 1 REFERENCE 3 REMARK 1 AUTH X.TU,K.DAS,Q.HAN,J.D.BAUMAN,A.D.CLARK,X.HOU,Y.V.FRENKEL, REMARK 1 AUTH 2 B.L.GAFFNEY,R.A.JONES,P.L.BOYER,S.H.HUGHES,S.G.SARAFIANOS, REMARK 1 AUTH 3 E.ARNOLD REMARK 1 TITL STRUCTURAL BASIS OF HIV-1 RESISTANCE TO AZT BY EXCISION. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 17 1202 2010 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 20852643 REMARK 1 DOI 10.1038/NSMB.1908 REMARK 1 REFERENCE 4 REMARK 1 AUTH K.DAS,J.D.BAUMAN,A.D.CLARK,Y.V.FRENKEL,P.J.LEWI,A.J.SHATKIN, REMARK 1 AUTH 2 S.H.HUGHES,E.ARNOLD REMARK 1 TITL HIGH-RESOLUTION STRUCTURES OF HIV-1 REVERSE REMARK 1 TITL 2 TRANSCRIPTASE/TMC278 COMPLEXES: STRATEGIC FLEXIBILITY REMARK 1 TITL 3 EXPLAINS POTENCY AGAINST RESISTANCE MUTATIONS. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 105 1466 2008 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 18230722 REMARK 1 DOI 10.1073/PNAS.0711209105 REMARK 1 REFERENCE 5 REMARK 1 AUTH S.G.SARAFIANOS,K.DAS,C.TANTILLO,A.D.CLARK,J.DING, REMARK 1 AUTH 2 J.M.WHITCOMB,P.L.BOYER,S.H.HUGHES,E.ARNOLD REMARK 1 TITL CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX REMARK 1 TITL 2 WITH A POLYPURINE TRACT RNA:DNA. REMARK 1 REF EMBO J. V. 20 1449 2001 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 11250910 REMARK 1 DOI 10.1093/EMBOJ/20.6.1449 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 47852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3953 - 7.1019 0.97 4677 147 0.1999 0.2875 REMARK 3 2 7.1019 - 5.6401 1.00 4697 155 0.2495 0.3059 REMARK 3 3 5.6401 - 4.9281 0.99 4706 131 0.2030 0.3072 REMARK 3 4 4.9281 - 4.4779 0.99 4687 134 0.1903 0.3003 REMARK 3 5 4.4779 - 4.1572 0.99 4668 152 0.1971 0.2541 REMARK 3 6 4.1572 - 3.9122 0.99 4628 142 0.2252 0.3104 REMARK 3 7 3.9122 - 3.7164 0.99 4630 134 0.2535 0.3401 REMARK 3 8 3.7164 - 3.5547 0.98 4597 134 0.2982 0.4119 REMARK 3 9 3.5547 - 3.4179 0.98 4585 161 0.3308 0.3937 REMARK 3 10 3.4179 - 3.2999 0.98 4558 129 0.3532 0.3887 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.620 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 18037 REMARK 3 ANGLE : 1.770 24841 REMARK 3 CHIRALITY : 0.072 2735 REMARK 3 PLANARITY : 0.012 2864 REMARK 3 DIHEDRAL : 20.183 6973 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q0B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.915 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48325 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3V81 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9-11% PEG8000, 100 MM AMMONIUM REMARK 280 SULFATE, 5% GLYCEROL, 5% SUCROSE, 20 MM MAGNESIUM CHLORIDE, PH REMARK 280 7.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 65.52550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, T, t, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F, e REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 465 MET C -1 REMARK 465 PRO D 1 REMARK 465 ILE D 2 REMARK 465 SER D 3 REMARK 465 ASP D 218 REMARK 465 LYS D 219 REMARK 465 LYS D 220 REMARK 465 HIS D 221 REMARK 465 GLN D 222 REMARK 465 LYS D 223 REMARK 465 GLU D 224 REMARK 465 PRO D 225 REMARK 465 PRO D 226 REMARK 465 PHE D 227 REMARK 465 LEU D 228 REMARK 465 TRP D 229 REMARK 465 MET D 230 REMARK 465 A T 1 REMARK 465 U T 2 REMARK 465 G T 3 REMARK 465 G T 4 REMARK 465 U T 5 REMARK 465 U t 11 REMARK 465 G t 12 REMARK 465 DA P 802 REMARK 465 DG P 822 REMARK 465 A E 1 REMARK 465 U E 2 REMARK 465 G E 3 REMARK 465 G E 4 REMARK 465 U E 5 REMARK 465 DA F 802 REMARK 465 DG F 822 REMARK 465 G e 10 REMARK 465 U e 11 REMARK 465 G e 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 0 CG1 CG2 REMARK 470 VAL C 0 CG1 CG2 REMARK 470 ARG C 448 CG CD NE CZ NH1 NH2 REMARK 470 DC P 803 P OP1 OP2 REMARK 470 DC F 803 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A t 1 P A t 1 OP3 -0.110 REMARK 500 DT P 812 O4' DT P 812 C4' -0.073 REMARK 500 DC P 818 O4' DC P 818 C4' 0.063 REMARK 500 DC F 809 O4' DC F 809 C4' 0.070 REMARK 500 DG F 811 O4' DG F 811 C4' 0.074 REMARK 500 A e 1 P A e 1 OP3 -0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 1 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 PRO A 150 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 PRO A 321 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO A 387 C - N - CA ANGL. DEV. = 14.3 DEGREES REMARK 500 PRO A 387 C - N - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 PRO A 420 C - N - CD ANGL. DEV. = -17.1 DEGREES REMARK 500 PRO B 387 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 PRO C 1 C - N - CA ANGL. DEV. = 13.9 DEGREES REMARK 500 PRO C 19 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO C 25 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 PRO C 119 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 THR C 128 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 PRO C 387 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 PRO C 387 C - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 PRO D 55 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO D 140 C - N - CA ANGL. DEV. = -18.1 DEGREES REMARK 500 PRO D 236 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 GLN D 332 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 DG P 805 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT P 806 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC P 807 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC P 818 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DA F 804 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC F 807 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC F 809 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DC F 809 C5' - C4' - O4' ANGL. DEV. = 10.9 DEGREES REMARK 500 DG F 811 O4' - C4' - C3' ANGL. DEV. = -3.9 DEGREES REMARK 500 DT F 812 C5' - C4' - O4' ANGL. DEV. = 7.3 DEGREES REMARK 500 DT F 813 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 G e 5 O3' - P - OP2 ANGL. DEV. = -13.9 DEGREES REMARK 500 G e 5 O3' - P - OP1 ANGL. DEV. = 13.8 DEGREES REMARK 500 G e 6 O3' - P - OP1 ANGL. DEV. = 11.9 DEGREES REMARK 500 A e 7 O3' - P - OP1 ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 122 -70.04 -43.85 REMARK 500 SER A 134 -71.96 -58.11 REMARK 500 ILE A 135 -65.94 -130.34 REMARK 500 ASN A 136 -76.37 -103.54 REMARK 500 ASN A 137 157.28 175.44 REMARK 500 GLU A 138 -72.58 -133.43 REMARK 500 MET A 184 -127.68 55.76 REMARK 500 ILE A 270 -56.10 -128.30 REMARK 500 GLN A 343 -58.89 -127.67 REMARK 500 PHE A 346 -3.82 73.92 REMARK 500 TRP A 401 -71.66 -58.62 REMARK 500 PRO A 412 -170.85 -69.96 REMARK 500 ASN A 471 72.05 59.10 REMARK 500 PRO B 55 43.68 -96.64 REMARK 500 SER B 117 -70.32 -57.10 REMARK 500 ASN B 136 17.52 54.84 REMARK 500 LYS B 166 -70.02 -59.41 REMARK 500 MET B 184 -139.61 45.05 REMARK 500 PHE B 346 -10.06 75.78 REMARK 500 HIS B 361 -0.28 81.16 REMARK 500 THR B 362 -52.27 -134.44 REMARK 500 PRO B 421 81.66 -69.59 REMARK 500 LYS C 22 -66.95 -127.12 REMARK 500 GLN C 23 163.69 177.35 REMARK 500 PRO C 25 84.32 -69.23 REMARK 500 ASN C 81 -70.69 -55.97 REMARK 500 GLU C 122 -70.10 -41.98 REMARK 500 ILE C 135 -59.31 -132.80 REMARK 500 ASN C 136 -169.10 -111.97 REMARK 500 ASN C 137 -3.89 -59.53 REMARK 500 GLU C 138 -168.02 -72.33 REMARK 500 THR C 139 176.58 -59.63 REMARK 500 PRO C 150 -173.45 -62.74 REMARK 500 MET C 184 -135.26 50.46 REMARK 500 GLN C 222 -74.18 -78.23 REMARK 500 ILE C 270 -56.71 -130.54 REMARK 500 GLU C 302 -70.88 -51.48 REMARK 500 GLN C 343 -60.07 -124.39 REMARK 500 PHE C 346 -0.68 69.92 REMARK 500 PRO C 412 -176.65 -62.20 REMARK 500 ASN C 471 70.31 57.68 REMARK 500 GLU D 89 -78.75 -100.62 REMARK 500 PRO D 97 77.67 -63.48 REMARK 500 SER D 117 -70.70 -60.18 REMARK 500 MET D 184 -135.13 48.33 REMARK 500 PHE D 346 -9.35 75.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 421 LEU B 422 148.61 REMARK 500 PRO D 421 LEU D 422 147.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 35 -10.87 REMARK 500 ASP A 123 -12.67 REMARK 500 PHE A 389 13.61 REMARK 500 PHE C 389 12.88 REMARK 500 GLN D 332 20.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 902 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD1 REMARK 620 2 GLY A 444 O 80.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 902 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 443 OD2 REMARK 620 2 ASP C 443 OD1 48.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NVP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NVP C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 e 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PWD RELATED DB: PDB REMARK 900 RELATED ID: 4PQU RELATED DB: PDB REMARK 900 RELATED ID: 4PUO RELATED DB: PDB REMARK 900 RELATED ID: 3V4I RELATED DB: PDB REMARK 900 RELATED ID: 3V81 RELATED DB: PDB REMARK 900 RELATED ID: 3V4D RELATED DB: PDB DBREF 4Q0B A 1 554 UNP P03366 POL_HV1B1 600 1153 DBREF 4Q0B B 1 428 UNP P03366 POL_HV1B1 600 1027 DBREF 4Q0B C 1 554 UNP P03366 POL_HV1B1 600 1153 DBREF 4Q0B D 1 428 UNP P03366 POL_HV1B1 600 1027 DBREF 4Q0B T 1 14 PDB 4Q0B 4Q0B 1 14 DBREF 4Q0B E 1 14 PDB 4Q0B 4Q0B 1 14 DBREF 4Q0B t 1 12 PDB 4Q0B 4Q0B 1 12 DBREF 4Q0B e 1 12 PDB 4Q0B 4Q0B 1 12 DBREF 4Q0B P 802 822 PDB 4Q0B 4Q0B 802 822 DBREF 4Q0B F 802 822 PDB 4Q0B 4Q0B 802 822 SEQADV 4Q0B MET A -1 UNP P03366 EXPRESSION TAG SEQADV 4Q0B VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 4Q0B CYS A 258 UNP P03366 GLN 857 ENGINEERED MUTATION SEQADV 4Q0B SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 4Q0B ASN A 498 UNP P03366 ASP 1097 ENGINEERED MUTATION SEQADV 4Q0B SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 4Q0B MET C -1 UNP P03366 EXPRESSION TAG SEQADV 4Q0B VAL C 0 UNP P03366 EXPRESSION TAG SEQADV 4Q0B CYS C 258 UNP P03366 GLN 857 ENGINEERED MUTATION SEQADV 4Q0B SER C 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 4Q0B ASN C 498 UNP P03366 ASP 1097 ENGINEERED MUTATION SEQADV 4Q0B SER D 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 556 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 556 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 556 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 556 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 556 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 556 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 556 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 556 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 556 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 556 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 556 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 556 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 556 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 556 LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 556 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 556 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 556 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 556 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 556 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 556 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE CYS SEQRES 21 A 556 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 556 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 556 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 556 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 556 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 556 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 556 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 556 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 556 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 556 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 556 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 556 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 556 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 556 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 556 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 556 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 556 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 556 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 556 VAL ASN ILE VAL THR ASN SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 556 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 556 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 556 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 556 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA SEQRES 1 B 428 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 428 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 428 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 428 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 428 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 428 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 428 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 428 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 428 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 428 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 428 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 428 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 428 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 428 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 428 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 428 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 428 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 428 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 428 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 428 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 428 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 428 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 428 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 428 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 428 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 428 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 428 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 428 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 428 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 428 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 428 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 428 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 428 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN SEQRES 1 C 556 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 C 556 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 C 556 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 C 556 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 C 556 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 C 556 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 C 556 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 C 556 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 C 556 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 C 556 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 C 556 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 C 556 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 C 556 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 C 556 LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE SEQRES 15 C 556 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 C 556 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 C 556 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 C 556 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 C 556 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 C 556 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE CYS SEQRES 21 C 556 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 C 556 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 C 556 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 C 556 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 C 556 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 C 556 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 C 556 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 C 556 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 C 556 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 C 556 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 C 556 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 C 556 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 C 556 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 C 556 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 C 556 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 C 556 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 C 556 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 C 556 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 C 556 VAL ASN ILE VAL THR ASN SER GLN TYR ALA LEU GLY ILE SEQRES 40 C 556 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 C 556 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 C 556 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 C 556 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA SEQRES 1 D 428 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 D 428 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 D 428 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 D 428 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 D 428 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 D 428 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 D 428 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 D 428 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 D 428 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 D 428 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 D 428 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 D 428 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 D 428 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 D 428 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 D 428 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 D 428 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 D 428 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 D 428 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 D 428 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 D 428 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 D 428 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 D 428 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 D 428 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 D 428 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 D 428 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 D 428 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 D 428 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 D 428 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 D 428 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 D 428 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 D 428 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 D 428 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 D 428 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN SEQRES 1 T 14 A U G G U C G G C G C C C SEQRES 2 T 14 G SEQRES 1 t 12 A C A G G G A C U G U G SEQRES 1 P 21 DA DC DA DG DT DC DC DC DT DG DT DT DC SEQRES 2 P 21 DG DG DG DC DG DC DC DG SEQRES 1 E 14 A U G G U C G G C G C C C SEQRES 2 E 14 G SEQRES 1 F 21 DA DC DA DG DT DC DC DC DT DG DT DT DC SEQRES 2 F 21 DG DG DG DC DG DC DC DG SEQRES 1 e 12 A C A G G G A C U G U G HET NVP A 901 20 HET MN A 902 1 HET NVP C 901 20 HET MN C 902 1 HET SO4 e 801 5 HETNAM NVP 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2- HETNAM 2 NVP B:2',3'-E][1,4]DIAZEPIN-6-ONE HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETSYN NVP NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE FORMUL 11 NVP 2(C15 H14 N4 O) FORMUL 12 MN 2(MN 2+) FORMUL 15 SO4 O4 S 2- HELIX 1 1 ILE A 31 GLY A 45 1 15 HELIX 2 2 PHE A 77 ARG A 83 1 7 HELIX 3 3 HIS A 96 LEU A 100 5 5 HELIX 4 4 ALA A 114 VAL A 118 5 5 HELIX 5 5 GLU A 122 ALA A 129 5 8 HELIX 6 6 LYS A 154 GLN A 174 1 21 HELIX 7 7 GLU A 194 TRP A 212 1 19 HELIX 8 8 THR A 253 GLN A 269 1 17 HELIX 9 9 VAL A 276 LEU A 282 1 7 HELIX 10 10 THR A 296 GLU A 312 1 17 HELIX 11 11 ASN A 363 TRP A 383 1 21 HELIX 12 12 GLN A 394 TYR A 405 1 12 HELIX 13 13 THR A 473 ASP A 488 1 16 HELIX 14 14 SER A 499 ALA A 508 1 10 HELIX 15 15 SER A 515 LYS A 528 1 14 HELIX 16 16 GLY A 544 ALA A 554 1 11 HELIX 17 17 THR B 27 GLU B 44 1 18 HELIX 18 18 PHE B 77 LEU B 92 1 16 HELIX 19 19 GLY B 99 LYS B 103 5 5 HELIX 20 20 GLY B 112 SER B 117 5 6 HELIX 21 21 PHE B 124 THR B 128 5 5 HELIX 22 22 SER B 134 GLU B 138 5 5 HELIX 23 23 LYS B 154 PHE B 160 1 7 HELIX 24 24 PHE B 160 ASN B 175 1 16 HELIX 25 25 GLU B 194 TRP B 212 1 19 HELIX 26 26 HIS B 235 TRP B 239 5 5 HELIX 27 27 VAL B 254 TYR B 271 1 18 HELIX 28 28 VAL B 276 LEU B 283 1 8 HELIX 29 29 THR B 296 LEU B 310 1 15 HELIX 30 30 ASN B 363 GLY B 384 1 22 HELIX 31 31 GLN B 394 TRP B 406 1 13 HELIX 32 32 VAL B 423 TYR B 427 5 5 HELIX 33 33 ALA C 33 GLU C 42 1 10 HELIX 34 34 ARG C 78 THR C 84 1 7 HELIX 35 35 HIS C 96 LEU C 100 5 5 HELIX 36 36 ALA C 114 VAL C 118 5 5 HELIX 37 37 ASP C 121 LYS C 126 1 6 HELIX 38 38 GLY C 155 ASN C 175 1 21 HELIX 39 39 GLU C 194 TRP C 212 1 19 HELIX 40 40 THR C 253 GLN C 269 1 17 HELIX 41 41 VAL C 276 LEU C 282 1 7 HELIX 42 42 THR C 296 LEU C 310 1 15 HELIX 43 43 ASN C 363 GLY C 384 1 22 HELIX 44 44 GLN C 394 TYR C 405 1 12 HELIX 45 45 THR C 473 ASP C 488 1 16 HELIX 46 46 SER C 499 ALA C 508 1 10 HELIX 47 47 SER C 515 LYS C 528 1 14 HELIX 48 48 ILE C 542 ALA C 554 1 13 HELIX 49 49 THR D 27 GLU D 44 1 18 HELIX 50 50 PHE D 77 GLU D 89 1 13 HELIX 51 51 GLY D 99 LYS D 103 5 5 HELIX 52 52 GLY D 112 SER D 117 5 6 HELIX 53 53 PHE D 124 THR D 128 5 5 HELIX 54 54 SER D 134 GLU D 138 5 5 HELIX 55 55 LYS D 154 ASN D 175 1 22 HELIX 56 56 GLU D 194 ARG D 211 1 18 HELIX 57 57 THR D 253 GLN D 269 1 17 HELIX 58 58 VAL D 276 LEU D 283 1 8 HELIX 59 59 THR D 296 GLU D 312 1 17 HELIX 60 60 ASN D 363 GLY D 384 1 22 HELIX 61 61 GLN D 394 TRP D 406 1 13 HELIX 62 62 LEU D 422 TYR D 427 5 6 SHEET 1 A 2 ILE A 47 SER A 48 0 SHEET 2 A 2 GLN A 145 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 1 B 3 SER A 105 ASP A 110 0 SHEET 2 B 3 ASP A 186 SER A 191 -1 O LEU A 187 N LEU A 109 SHEET 3 B 3 VAL A 179 TYR A 183 -1 N TYR A 181 O TYR A 188 SHEET 1 C 3 PHE A 227 TRP A 229 0 SHEET 2 C 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 C 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 D 5 ASN A 348 TYR A 354 0 SHEET 2 D 5 GLN A 336 TYR A 342 -1 N ILE A 341 O LYS A 350 SHEET 3 D 5 ILE A 326 GLY A 333 -1 N GLU A 328 O GLN A 340 SHEET 4 D 5 LYS A 388 LEU A 391 1 O LYS A 390 N ILE A 329 SHEET 5 D 5 GLU A 415 PHE A 416 1 O GLU A 415 N PHE A 389 SHEET 1 E 2 HIS A 361 THR A 362 0 SHEET 2 E 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 F 5 GLN A 464 THR A 470 0 SHEET 2 F 5 LEU A 452 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 F 5 GLU A 438 ASN A 447 -1 N TYR A 441 O VAL A 458 SHEET 4 F 5 GLU A 492 THR A 497 1 O VAL A 496 N VAL A 442 SHEET 5 F 5 LYS A 530 TRP A 535 1 O TYR A 532 N ILE A 495 SHEET 1 G 3 ILE B 47 LYS B 49 0 SHEET 2 G 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 G 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 H 2 VAL B 60 ILE B 63 0 SHEET 2 H 2 ARG B 72 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 I 4 VAL B 179 TYR B 183 0 SHEET 2 I 4 ASP B 186 SER B 191 -1 O GLY B 190 N VAL B 179 SHEET 3 I 4 SER B 105 ASP B 110 -1 N THR B 107 O VAL B 189 SHEET 4 I 4 GLU B 233 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 J 2 TRP B 252 THR B 253 0 SHEET 2 J 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 K 5 LYS B 347 TYR B 354 0 SHEET 2 K 5 GLN B 336 GLU B 344 -1 N ILE B 341 O LYS B 350 SHEET 3 K 5 ILE B 326 GLY B 333 -1 N GLN B 330 O THR B 338 SHEET 4 K 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 K 5 GLU B 413 PHE B 416 1 O GLU B 413 N PHE B 389 SHEET 1 L 2 SER C 48 LYS C 49 0 SHEET 2 L 2 TYR C 144 GLN C 145 -1 O GLN C 145 N SER C 48 SHEET 1 M 3 SER C 105 ASP C 110 0 SHEET 2 M 3 ASP C 186 SER C 191 -1 O VAL C 189 N THR C 107 SHEET 3 M 3 VAL C 179 TYR C 183 -1 N TYR C 181 O TYR C 188 SHEET 1 N 3 PHE C 227 TRP C 229 0 SHEET 2 N 3 TYR C 232 LEU C 234 -1 O LEU C 234 N PHE C 227 SHEET 3 N 3 TRP C 239 VAL C 241 -1 O THR C 240 N GLU C 233 SHEET 1 O 5 ASN C 348 TYR C 354 0 SHEET 2 O 5 GLN C 336 TYR C 342 -1 N ILE C 341 O LEU C 349 SHEET 3 O 5 ILE C 326 GLY C 333 -1 N GLU C 328 O GLN C 340 SHEET 4 O 5 LYS C 388 LEU C 391 1 O LYS C 388 N ALA C 327 SHEET 5 O 5 TRP C 414 PHE C 416 1 O GLU C 415 N PHE C 389 SHEET 1 P 2 HIS C 361 THR C 362 0 SHEET 2 P 2 LYS C 512 SER C 513 -1 O LYS C 512 N THR C 362 SHEET 1 Q 5 GLN C 464 THR C 470 0 SHEET 2 Q 5 LEU C 452 THR C 459 -1 N GLY C 453 O LEU C 469 SHEET 3 Q 5 GLU C 438 ASN C 447 -1 N ASN C 447 O LEU C 452 SHEET 4 Q 5 GLU C 492 THR C 497 1 O ASN C 494 N PHE C 440 SHEET 5 Q 5 LYS C 530 TRP C 535 1 O ALA C 534 N ILE C 495 SHEET 1 R 3 ILE D 47 LYS D 49 0 SHEET 2 R 3 ILE D 142 TYR D 146 -1 O GLN D 145 N SER D 48 SHEET 3 R 3 PHE D 130 ILE D 132 -1 N ILE D 132 O ILE D 142 SHEET 1 S 2 VAL D 60 LYS D 64 0 SHEET 2 S 2 TRP D 71 VAL D 75 -1 O LEU D 74 N PHE D 61 SHEET 1 T 3 SER D 105 ASP D 110 0 SHEET 2 T 3 ASP D 186 SER D 191 -1 O VAL D 189 N THR D 107 SHEET 3 T 3 VAL D 179 TYR D 183 -1 N TYR D 181 O TYR D 188 SHEET 1 U 5 LYS D 347 TYR D 354 0 SHEET 2 U 5 TRP D 337 GLU D 344 -1 N ILE D 341 O LYS D 350 SHEET 3 U 5 ILE D 326 LYS D 331 -1 N GLN D 330 O THR D 338 SHEET 4 U 5 LYS D 388 LEU D 391 1 O LYS D 388 N ALA D 327 SHEET 5 U 5 GLU D 413 PHE D 416 1 O GLU D 413 N PHE D 389 LINK OD1 ASP A 443 MN MN A 902 1555 1555 2.28 LINK O GLY A 444 MN MN A 902 1555 1555 2.75 LINK OD2 ASP C 443 MN MN C 902 1555 1555 2.51 LINK OD1 ASP C 443 MN MN C 902 1555 1555 2.77 CISPEP 1 PRO A 225 PRO A 226 0 13.89 CISPEP 2 PRO A 420 PRO A 421 0 -1.62 CISPEP 3 PRO C 225 PRO C 226 0 -10.53 CISPEP 4 PRO C 420 PRO C 421 0 -4.46 SITE 1 AC1 7 LEU A 100 LYS A 101 VAL A 179 TYR A 181 SITE 2 AC1 7 TYR A 188 LEU A 234 PRO A 236 SITE 1 AC2 2 ASP A 443 GLY A 444 SITE 1 AC3 11 LEU C 100 LYS C 101 LYS C 103 VAL C 106 SITE 2 AC3 11 VAL C 179 TYR C 181 TYR C 188 LEU C 234 SITE 3 AC3 11 HIS C 235 PRO C 236 TYR C 318 SITE 1 AC4 4 ASP C 443 GLY C 444 ASP C 549 C e 8 SITE 1 AC5 2 G E 14 A e 1 CRYST1 89.716 131.051 141.631 90.00 100.69 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011146 0.000000 0.002104 0.00000 SCALE2 0.000000 0.007631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007185 0.00000