HEADER LIGASE 03-APR-14 4Q16 TITLE STRUCTURE OF NAD+ SYNTHETASE FROM DEINOCOCCUS RADIODURANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NH(3)-DEPENDENT NAD(+) SYNTHETASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 6.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: R1; SOURCE 5 GENE: NADE, DR_A0201; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NADS, NAD SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.Y.LEE,Y.W.PARK REVDAT 2 20-MAR-24 4Q16 1 REMARK REVDAT 1 15-APR-15 4Q16 0 JRNL AUTH J.Y.LEE,Y.W.PARK,H.K.YEO JRNL TITL STRUCTURAL ANALYSIS OF THE NH3-DEPENDENT NAD+ SYNTHETASE JRNL TITL 2 FROM DEINOCOCCUS RADIODURANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 48478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3825 - 6.7874 1.00 2752 158 0.1954 0.2160 REMARK 3 2 6.7874 - 5.3983 0.99 2645 125 0.2356 0.2901 REMARK 3 3 5.3983 - 4.7191 1.00 2617 142 0.2188 0.2996 REMARK 3 4 4.7191 - 4.2891 0.99 2593 147 0.1951 0.2308 REMARK 3 5 4.2891 - 3.9824 0.99 2589 130 0.1979 0.2472 REMARK 3 6 3.9824 - 3.7481 0.99 2571 141 0.2230 0.2757 REMARK 3 7 3.7481 - 3.5608 0.99 2550 138 0.2342 0.2649 REMARK 3 8 3.5608 - 3.4060 0.99 2570 124 0.2418 0.2850 REMARK 3 9 3.4060 - 3.2751 0.99 2551 143 0.2586 0.3277 REMARK 3 10 3.2751 - 3.1622 0.99 2516 143 0.2728 0.3510 REMARK 3 11 3.1622 - 3.0634 0.99 2550 137 0.2823 0.3450 REMARK 3 12 3.0634 - 2.9759 0.99 2511 137 0.2802 0.3477 REMARK 3 13 2.9759 - 2.8977 0.98 2537 145 0.2942 0.3867 REMARK 3 14 2.8977 - 2.8270 0.98 2496 126 0.2894 0.3256 REMARK 3 15 2.8270 - 2.7628 0.98 2496 138 0.2977 0.4171 REMARK 3 16 2.7628 - 2.7040 0.97 2513 123 0.2932 0.3154 REMARK 3 17 2.7040 - 2.6500 0.97 2467 125 0.2891 0.3653 REMARK 3 18 2.6500 - 2.6000 0.97 2494 138 0.2978 0.3742 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 8043 REMARK 3 ANGLE : 0.539 10947 REMARK 3 CHIRALITY : 0.034 1236 REMARK 3 PLANARITY : 0.003 1457 REMARK 3 DIHEDRAL : 11.362 2821 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q16 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLY ETHYLENE GLYCOL (PEG) 4000, REMARK 280 0.2M LITHIUM SULFATE, 0.1M MES PH 6.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.61500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.61500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 LEU A 6 REMARK 465 PRO A 7 REMARK 465 GLU A 221 REMARK 465 ASP A 222 REMARK 465 ASP A 223 REMARK 465 ARG A 224 REMARK 465 GLY A 282 REMARK 465 GLU A 283 REMARK 465 GLN A 284 REMARK 465 LYS A 285 REMARK 465 GLN A 286 REMARK 465 SER A 287 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 PRO B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 LEU B 6 REMARK 465 VAL B 215 REMARK 465 PRO B 216 REMARK 465 THR B 217 REMARK 465 ALA B 218 REMARK 465 ASP B 219 REMARK 465 LEU B 220 REMARK 465 GLU B 221 REMARK 465 GLY B 282 REMARK 465 GLU B 283 REMARK 465 GLN B 284 REMARK 465 LYS B 285 REMARK 465 GLN B 286 REMARK 465 SER B 287 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 PRO C 3 REMARK 465 SER C 4 REMARK 465 PRO C 5 REMARK 465 LEU C 6 REMARK 465 PRO C 7 REMARK 465 LEU C 8 REMARK 465 SER C 9 REMARK 465 PRO C 10 REMARK 465 ARG C 213 REMARK 465 LYS C 214 REMARK 465 VAL C 215 REMARK 465 PRO C 216 REMARK 465 THR C 217 REMARK 465 ALA C 218 REMARK 465 ASP C 219 REMARK 465 LEU C 220 REMARK 465 GLU C 221 REMARK 465 ASP C 222 REMARK 465 ASP C 223 REMARK 465 ARG C 224 REMARK 465 PRO C 225 REMARK 465 GLY C 226 REMARK 465 LEU C 227 REMARK 465 PRO C 228 REMARK 465 GLY C 282 REMARK 465 GLU C 283 REMARK 465 GLN C 284 REMARK 465 LYS C 285 REMARK 465 GLN C 286 REMARK 465 SER C 287 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 PRO D 3 REMARK 465 SER D 4 REMARK 465 PRO D 5 REMARK 465 LEU D 6 REMARK 465 PRO D 7 REMARK 465 ASP D 219 REMARK 465 LEU D 220 REMARK 465 GLU D 221 REMARK 465 ASP D 222 REMARK 465 GLU D 283 REMARK 465 GLN D 284 REMARK 465 LYS D 285 REMARK 465 GLN D 286 REMARK 465 SER D 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 8 CG CD1 CD2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 48 CD CE NZ REMARK 470 ARG A 140 CD NE CZ NH1 NH2 REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 220 CG CD1 CD2 REMARK 470 PRO A 225 CG CD REMARK 470 GLU A 248 CB CG CD OE1 OE2 REMARK 470 PRO A 281 CG CD REMARK 470 PRO B 7 CG CD REMARK 470 LEU B 11 CG CD1 CD2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 93 CG CD OE1 NE2 REMARK 470 ASP B 95 CG OD1 OD2 REMARK 470 ARG B 196 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 209 CD OE1 OE2 REMARK 470 ARG B 213 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 214 CG CD CE NZ REMARK 470 ASP B 222 CG OD1 OD2 REMARK 470 ASP B 223 CG OD1 OD2 REMARK 470 ARG B 224 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 247 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 248 CB CG CD OE1 OE2 REMARK 470 GLU B 252 CG CD OE1 OE2 REMARK 470 ARG B 259 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 11 CG CD1 CD2 REMARK 470 SER C 13 OG REMARK 470 HIS C 14 CG ND1 CD2 CE1 NE2 REMARK 470 ILE C 16 CG1 CG2 CD1 REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 33 CD NE CZ NH1 NH2 REMARK 470 LYS C 48 CD CE NZ REMARK 470 VAL C 92 CG1 CG2 REMARK 470 GLN C 93 CG CD OE1 NE2 REMARK 470 ASP C 95 CG OD1 OD2 REMARK 470 GLU C 96 CG CD OE1 OE2 REMARK 470 GLU C 111 CD OE1 OE2 REMARK 470 GLU C 118 CG CD OE1 OE2 REMARK 470 ARG C 136 CD NE CZ NH1 NH2 REMARK 470 ASP C 229 CG OD1 OD2 REMARK 470 GLU C 230 CG CD OE1 OE2 REMARK 470 VAL C 231 CG1 CG2 REMARK 470 VAL C 235 CG1 CG2 REMARK 470 GLN C 239 CG CD OE1 NE2 REMARK 470 GLU C 248 CB CG CD OE1 OE2 REMARK 470 VAL C 249 CG1 CG2 REMARK 470 GLU C 252 CG CD OE1 OE2 REMARK 470 ARG C 256 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 259 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 272 CG1 CG2 REMARK 470 GLN C 280 CD OE1 NE2 REMARK 470 LEU D 8 CG CD1 CD2 REMARK 470 SER D 9 OG REMARK 470 SER D 13 OG REMARK 470 ARG D 17 CD NE CZ NH1 NH2 REMARK 470 LYS D 48 CG CD CE NZ REMARK 470 GLN D 93 CG CD OE1 NE2 REMARK 470 ASP D 95 CG OD1 OD2 REMARK 470 LYS D 117 CG CD CE NZ REMARK 470 GLU D 134 CG CD OE1 OE2 REMARK 470 ARG D 140 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 209 CG CD OE1 OE2 REMARK 470 THR D 217 OG1 CG2 REMARK 470 ASP D 223 CG OD1 OD2 REMARK 470 ARG D 224 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 248 CB CG CD OE1 OE2 REMARK 470 GLN D 280 CD OE1 NE2 REMARK 470 PRO D 281 CG CD REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 231 N REMARK 480 ALA A 269 N REMARK 480 LEU A 270 CA C REMARK 480 PRO A 271 CA C REMARK 480 VAL A 272 CA C REMARK 480 THR A 273 CA C REMARK 480 VAL B 231 N REMARK 480 ALA B 269 N REMARK 480 LEU B 270 CA C REMARK 480 PRO B 271 CA C REMARK 480 VAL B 272 CA C REMARK 480 THR B 273 CA C REMARK 480 VAL C 231 N REMARK 480 ALA C 269 N REMARK 480 LEU C 270 CA C REMARK 480 PRO C 271 CA C REMARK 480 VAL C 272 CA C REMARK 480 THR C 273 CA C REMARK 480 THR D 217 N REMARK 480 VAL D 231 N REMARK 480 ALA D 269 N REMARK 480 LEU D 270 CA C REMARK 480 PRO D 271 CA C REMARK 480 VAL D 272 CA C REMARK 480 THR D 273 CA C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 401 O HOH D 481 1.67 REMARK 500 OD2 ASP C 59 NE2 HIS C 168 2.09 REMARK 500 OD2 ASP B 167 O HOH B 433 2.11 REMARK 500 O ALA B 172 O HOH B 438 2.15 REMARK 500 NZ LYS A 117 OD2 ASP A 121 2.16 REMARK 500 OD1 ASP B 24 O HOH B 439 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 216 98.11 -61.59 REMARK 500 ALA A 218 -82.47 -88.72 REMARK 500 ASP A 219 -155.29 42.34 REMARK 500 ARG A 247 -154.67 -105.10 REMARK 500 ARG A 268 30.75 -95.26 REMARK 500 PRO A 274 1.35 -62.64 REMARK 500 ARG B 247 -157.22 -83.27 REMARK 500 SER B 250 -167.57 -67.98 REMARK 500 PRO B 274 13.44 -67.65 REMARK 500 ILE C 15 -34.97 -130.27 REMARK 500 PRO C 23 -71.82 -45.73 REMARK 500 PRO C 46 21.05 -79.15 REMARK 500 GLN C 93 94.01 58.89 REMARK 500 THR C 211 45.83 -99.27 REMARK 500 ARG C 247 -139.57 -116.24 REMARK 500 PRO C 274 9.57 -59.78 REMARK 500 SER D 9 -56.80 -157.85 REMARK 500 PRO D 10 -110.11 -99.16 REMARK 500 PRO D 27 87.16 -63.05 REMARK 500 PRO D 46 39.22 -85.51 REMARK 500 ASP D 95 47.51 -89.79 REMARK 500 GLU D 96 43.96 -79.94 REMARK 500 ARG D 224 72.28 -158.56 REMARK 500 PRO D 225 53.82 -97.80 REMARK 500 ARG D 247 -144.68 -112.19 REMARK 500 PRO D 274 20.80 -64.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 302 DBREF 4Q16 A 1 287 UNP Q9RYV5 NADE_DEIRA 1 287 DBREF 4Q16 B 1 287 UNP Q9RYV5 NADE_DEIRA 1 287 DBREF 4Q16 C 1 287 UNP Q9RYV5 NADE_DEIRA 1 287 DBREF 4Q16 D 1 287 UNP Q9RYV5 NADE_DEIRA 1 287 SEQRES 1 A 287 MET THR PRO SER PRO LEU PRO LEU SER PRO LEU ARG SER SEQRES 2 A 287 HIS ILE ILE ARG GLU LEU HIS VAL GLN PRO ASP ILE ASP SEQRES 3 A 287 PRO GLY ALA GLU VAL GLU ARG ARG VAL ALA PHE LEU CYS SEQRES 4 A 287 ASP TYR LEU GLN SER THR PRO THR LYS GLY PHE VAL LEU SEQRES 5 A 287 GLY ILE SER GLY GLY GLN ASP SER THR LEU ALA GLY ARG SEQRES 6 A 287 LEU CYS GLN LEU ALA VAL GLU ARG ARG ARG SER GLN GLY SEQRES 7 A 287 HIS GLY ALA THR PHE LEU ALA VAL ARG LEU PRO TYR GLY SEQRES 8 A 287 VAL GLN ALA ASP GLU ALA ASP ALA GLN GLN ALA LEU ASP SEQRES 9 A 287 PHE ILE GLN ALA ASP ARG GLU VAL THR VAL ASN ILE LYS SEQRES 10 A 287 GLU ALA ALA ASP ALA SER VAL ALA ALA ALA GLN ALA ALA SEQRES 11 A 287 LEU GLY SER GLU VAL ARG ASP PHE VAL ARG GLY ASN VAL SEQRES 12 A 287 LYS ALA ARG GLU ARG MET VAL ALA GLN TYR ALA LEU ALA SEQRES 13 A 287 GLY GLN GLU ASN LEU LEU VAL VAL GLY THR ASP HIS ALA SEQRES 14 A 287 ALA GLU ALA LEU THR GLY PHE TYR THR LYS TYR GLY ASP SEQRES 15 A 287 GLY GLY VAL ASP LEU THR PRO LEU SER GLY LEU THR LYS SEQRES 16 A 287 ARG GLN GLY ALA GLN LEU LEU ALA HIS LEU GLY ALA PRO SEQRES 17 A 287 GLU GLY THR TRP ARG LYS VAL PRO THR ALA ASP LEU GLU SEQRES 18 A 287 ASP ASP ARG PRO GLY LEU PRO ASP GLU VAL ALA LEU GLY SEQRES 19 A 287 VAL THR TYR ALA GLN ILE ASP ALA TYR LEU GLU GLY ARG SEQRES 20 A 287 GLU VAL SER ASP GLU ALA ALA ALA ARG LEU GLU ARG LEU SEQRES 21 A 287 PHE LEU ASN SER ARG HIS LYS ARG ALA LEU PRO VAL THR SEQRES 22 A 287 PRO PHE ASP GLY TRP TRP GLN PRO GLY GLU GLN LYS GLN SEQRES 23 A 287 SER SEQRES 1 B 287 MET THR PRO SER PRO LEU PRO LEU SER PRO LEU ARG SER SEQRES 2 B 287 HIS ILE ILE ARG GLU LEU HIS VAL GLN PRO ASP ILE ASP SEQRES 3 B 287 PRO GLY ALA GLU VAL GLU ARG ARG VAL ALA PHE LEU CYS SEQRES 4 B 287 ASP TYR LEU GLN SER THR PRO THR LYS GLY PHE VAL LEU SEQRES 5 B 287 GLY ILE SER GLY GLY GLN ASP SER THR LEU ALA GLY ARG SEQRES 6 B 287 LEU CYS GLN LEU ALA VAL GLU ARG ARG ARG SER GLN GLY SEQRES 7 B 287 HIS GLY ALA THR PHE LEU ALA VAL ARG LEU PRO TYR GLY SEQRES 8 B 287 VAL GLN ALA ASP GLU ALA ASP ALA GLN GLN ALA LEU ASP SEQRES 9 B 287 PHE ILE GLN ALA ASP ARG GLU VAL THR VAL ASN ILE LYS SEQRES 10 B 287 GLU ALA ALA ASP ALA SER VAL ALA ALA ALA GLN ALA ALA SEQRES 11 B 287 LEU GLY SER GLU VAL ARG ASP PHE VAL ARG GLY ASN VAL SEQRES 12 B 287 LYS ALA ARG GLU ARG MET VAL ALA GLN TYR ALA LEU ALA SEQRES 13 B 287 GLY GLN GLU ASN LEU LEU VAL VAL GLY THR ASP HIS ALA SEQRES 14 B 287 ALA GLU ALA LEU THR GLY PHE TYR THR LYS TYR GLY ASP SEQRES 15 B 287 GLY GLY VAL ASP LEU THR PRO LEU SER GLY LEU THR LYS SEQRES 16 B 287 ARG GLN GLY ALA GLN LEU LEU ALA HIS LEU GLY ALA PRO SEQRES 17 B 287 GLU GLY THR TRP ARG LYS VAL PRO THR ALA ASP LEU GLU SEQRES 18 B 287 ASP ASP ARG PRO GLY LEU PRO ASP GLU VAL ALA LEU GLY SEQRES 19 B 287 VAL THR TYR ALA GLN ILE ASP ALA TYR LEU GLU GLY ARG SEQRES 20 B 287 GLU VAL SER ASP GLU ALA ALA ALA ARG LEU GLU ARG LEU SEQRES 21 B 287 PHE LEU ASN SER ARG HIS LYS ARG ALA LEU PRO VAL THR SEQRES 22 B 287 PRO PHE ASP GLY TRP TRP GLN PRO GLY GLU GLN LYS GLN SEQRES 23 B 287 SER SEQRES 1 C 287 MET THR PRO SER PRO LEU PRO LEU SER PRO LEU ARG SER SEQRES 2 C 287 HIS ILE ILE ARG GLU LEU HIS VAL GLN PRO ASP ILE ASP SEQRES 3 C 287 PRO GLY ALA GLU VAL GLU ARG ARG VAL ALA PHE LEU CYS SEQRES 4 C 287 ASP TYR LEU GLN SER THR PRO THR LYS GLY PHE VAL LEU SEQRES 5 C 287 GLY ILE SER GLY GLY GLN ASP SER THR LEU ALA GLY ARG SEQRES 6 C 287 LEU CYS GLN LEU ALA VAL GLU ARG ARG ARG SER GLN GLY SEQRES 7 C 287 HIS GLY ALA THR PHE LEU ALA VAL ARG LEU PRO TYR GLY SEQRES 8 C 287 VAL GLN ALA ASP GLU ALA ASP ALA GLN GLN ALA LEU ASP SEQRES 9 C 287 PHE ILE GLN ALA ASP ARG GLU VAL THR VAL ASN ILE LYS SEQRES 10 C 287 GLU ALA ALA ASP ALA SER VAL ALA ALA ALA GLN ALA ALA SEQRES 11 C 287 LEU GLY SER GLU VAL ARG ASP PHE VAL ARG GLY ASN VAL SEQRES 12 C 287 LYS ALA ARG GLU ARG MET VAL ALA GLN TYR ALA LEU ALA SEQRES 13 C 287 GLY GLN GLU ASN LEU LEU VAL VAL GLY THR ASP HIS ALA SEQRES 14 C 287 ALA GLU ALA LEU THR GLY PHE TYR THR LYS TYR GLY ASP SEQRES 15 C 287 GLY GLY VAL ASP LEU THR PRO LEU SER GLY LEU THR LYS SEQRES 16 C 287 ARG GLN GLY ALA GLN LEU LEU ALA HIS LEU GLY ALA PRO SEQRES 17 C 287 GLU GLY THR TRP ARG LYS VAL PRO THR ALA ASP LEU GLU SEQRES 18 C 287 ASP ASP ARG PRO GLY LEU PRO ASP GLU VAL ALA LEU GLY SEQRES 19 C 287 VAL THR TYR ALA GLN ILE ASP ALA TYR LEU GLU GLY ARG SEQRES 20 C 287 GLU VAL SER ASP GLU ALA ALA ALA ARG LEU GLU ARG LEU SEQRES 21 C 287 PHE LEU ASN SER ARG HIS LYS ARG ALA LEU PRO VAL THR SEQRES 22 C 287 PRO PHE ASP GLY TRP TRP GLN PRO GLY GLU GLN LYS GLN SEQRES 23 C 287 SER SEQRES 1 D 287 MET THR PRO SER PRO LEU PRO LEU SER PRO LEU ARG SER SEQRES 2 D 287 HIS ILE ILE ARG GLU LEU HIS VAL GLN PRO ASP ILE ASP SEQRES 3 D 287 PRO GLY ALA GLU VAL GLU ARG ARG VAL ALA PHE LEU CYS SEQRES 4 D 287 ASP TYR LEU GLN SER THR PRO THR LYS GLY PHE VAL LEU SEQRES 5 D 287 GLY ILE SER GLY GLY GLN ASP SER THR LEU ALA GLY ARG SEQRES 6 D 287 LEU CYS GLN LEU ALA VAL GLU ARG ARG ARG SER GLN GLY SEQRES 7 D 287 HIS GLY ALA THR PHE LEU ALA VAL ARG LEU PRO TYR GLY SEQRES 8 D 287 VAL GLN ALA ASP GLU ALA ASP ALA GLN GLN ALA LEU ASP SEQRES 9 D 287 PHE ILE GLN ALA ASP ARG GLU VAL THR VAL ASN ILE LYS SEQRES 10 D 287 GLU ALA ALA ASP ALA SER VAL ALA ALA ALA GLN ALA ALA SEQRES 11 D 287 LEU GLY SER GLU VAL ARG ASP PHE VAL ARG GLY ASN VAL SEQRES 12 D 287 LYS ALA ARG GLU ARG MET VAL ALA GLN TYR ALA LEU ALA SEQRES 13 D 287 GLY GLN GLU ASN LEU LEU VAL VAL GLY THR ASP HIS ALA SEQRES 14 D 287 ALA GLU ALA LEU THR GLY PHE TYR THR LYS TYR GLY ASP SEQRES 15 D 287 GLY GLY VAL ASP LEU THR PRO LEU SER GLY LEU THR LYS SEQRES 16 D 287 ARG GLN GLY ALA GLN LEU LEU ALA HIS LEU GLY ALA PRO SEQRES 17 D 287 GLU GLY THR TRP ARG LYS VAL PRO THR ALA ASP LEU GLU SEQRES 18 D 287 ASP ASP ARG PRO GLY LEU PRO ASP GLU VAL ALA LEU GLY SEQRES 19 D 287 VAL THR TYR ALA GLN ILE ASP ALA TYR LEU GLU GLY ARG SEQRES 20 D 287 GLU VAL SER ASP GLU ALA ALA ALA ARG LEU GLU ARG LEU SEQRES 21 D 287 PHE LEU ASN SER ARG HIS LYS ARG ALA LEU PRO VAL THR SEQRES 22 D 287 PRO PHE ASP GLY TRP TRP GLN PRO GLY GLU GLN LYS GLN SEQRES 23 D 287 SER HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 C 301 5 HET SO4 C 302 5 HET SO4 D 301 5 HET SO4 D 302 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 8(O4 S 2-) FORMUL 13 HOH *362(H2 O) HELIX 1 1 SER A 9 HIS A 20 1 12 HELIX 2 2 ASP A 26 SER A 44 1 19 HELIX 3 3 GLY A 57 GLN A 77 1 21 HELIX 4 4 GLU A 96 GLN A 107 1 12 HELIX 5 5 ILE A 116 GLY A 132 1 17 HELIX 6 6 ARG A 136 ASN A 160 1 25 HELIX 7 7 HIS A 168 GLY A 175 1 8 HELIX 8 8 THR A 194 LEU A 205 1 12 HELIX 9 9 PRO A 208 TRP A 212 5 5 HELIX 10 10 PRO A 228 GLY A 234 1 7 HELIX 11 11 THR A 236 GLU A 245 1 10 HELIX 12 12 SER A 250 SER A 264 1 15 HELIX 13 13 ARG A 265 ARG A 268 5 4 HELIX 14 14 SER B 9 LEU B 19 1 11 HELIX 15 15 ASP B 26 SER B 44 1 19 HELIX 16 16 GLY B 57 GLN B 77 1 21 HELIX 17 17 GLU B 96 GLN B 107 1 12 HELIX 18 18 ILE B 116 GLY B 132 1 17 HELIX 19 19 ARG B 136 GLU B 159 1 24 HELIX 20 20 HIS B 168 GLY B 175 1 8 HELIX 21 21 THR B 194 LEU B 205 1 12 HELIX 22 22 PRO B 208 TRP B 212 5 5 HELIX 23 23 LEU B 227 GLY B 234 1 8 HELIX 24 24 THR B 236 GLU B 245 1 10 HELIX 25 25 ASP B 251 ASN B 263 1 13 HELIX 26 26 ARG C 12 ARG C 17 1 6 HELIX 27 27 ASP C 26 SER C 44 1 19 HELIX 28 28 GLY C 57 GLN C 77 1 21 HELIX 29 29 ALA C 97 GLN C 107 1 11 HELIX 30 30 ILE C 116 GLY C 132 1 17 HELIX 31 31 ARG C 136 ASN C 160 1 25 HELIX 32 32 HIS C 168 GLY C 175 1 8 HELIX 33 33 THR C 194 LEU C 205 1 12 HELIX 34 34 PRO C 208 TRP C 212 5 5 HELIX 35 35 THR C 236 GLU C 245 1 10 HELIX 36 36 SER C 250 ASN C 263 1 14 HELIX 37 37 SER C 264 ALA C 269 5 6 HELIX 38 38 PRO D 10 LEU D 19 1 10 HELIX 39 39 GLY D 28 SER D 44 1 17 HELIX 40 40 GLY D 57 GLY D 78 1 22 HELIX 41 41 GLU D 96 GLN D 107 1 12 HELIX 42 42 ILE D 116 GLY D 132 1 17 HELIX 43 43 ARG D 136 ASN D 160 1 25 HELIX 44 44 HIS D 168 GLY D 175 1 8 HELIX 45 45 THR D 194 LEU D 205 1 12 HELIX 46 46 PRO D 228 GLY D 234 1 7 HELIX 47 47 THR D 236 GLU D 245 1 10 HELIX 48 48 SER D 250 SER D 264 1 15 HELIX 49 49 ARG D 265 ALA D 269 5 5 SHEET 1 A 4 ARG A 110 THR A 113 0 SHEET 2 A 4 THR A 82 ARG A 87 1 N ALA A 85 O ARG A 110 SHEET 3 A 4 GLY A 49 GLY A 53 1 N PHE A 50 O LEU A 84 SHEET 4 A 4 LEU A 162 VAL A 163 1 O LEU A 162 N GLY A 49 SHEET 1 B 4 ARG B 110 THR B 113 0 SHEET 2 B 4 THR B 82 ARG B 87 1 N ALA B 85 O ARG B 110 SHEET 3 B 4 GLY B 49 GLY B 53 1 N LEU B 52 O VAL B 86 SHEET 4 B 4 LEU B 162 VAL B 163 1 O LEU B 162 N VAL B 51 SHEET 1 C 4 ARG C 110 THR C 113 0 SHEET 2 C 4 THR C 82 ARG C 87 1 N ARG C 87 O VAL C 112 SHEET 3 C 4 GLY C 49 GLY C 53 1 N LEU C 52 O VAL C 86 SHEET 4 C 4 LEU C 162 VAL C 163 1 O LEU C 162 N GLY C 49 SHEET 1 D 4 ARG D 110 THR D 113 0 SHEET 2 D 4 THR D 82 ARG D 87 1 N ALA D 85 O ARG D 110 SHEET 3 D 4 GLY D 49 ILE D 54 1 N PHE D 50 O LEU D 84 SHEET 4 D 4 LEU D 162 VAL D 163 1 O LEU D 162 N GLY D 49 SITE 1 AC1 6 SER A 55 GLY A 57 GLN A 58 ASP A 59 SITE 2 AC1 6 SER A 60 HOH A 448 SITE 1 AC2 2 HIS A 79 GLY A 80 SITE 1 AC3 5 SER B 55 GLY B 57 ASP B 59 SER B 60 SITE 2 AC3 5 THR B 166 SITE 1 AC4 4 GLY B 78 HIS B 79 GLY B 80 HOH B 432 SITE 1 AC5 4 SER C 55 GLY C 57 ASP C 59 SER C 60 SITE 1 AC6 3 HIS C 79 GLY C 80 HOH C 406 SITE 1 AC7 6 SER D 55 GLY D 57 GLN D 58 ASP D 59 SITE 2 AC7 6 SER D 60 HOH D 420 SITE 1 AC8 2 HIS D 79 GLY D 80 CRYST1 113.230 114.150 121.620 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008222 0.00000